Preimplantation genetic diagnosis was used to avoid the transmission of four lysosomal storage disorders (TSD, GD, FD, HS) in couples at risk. 329 eggs from 56 cycles underwent PGD and analysis, resulting in 20 families avoiding transmission. Two human embryonic stem cell lines were derived from embryos diagnosed with Hunter syndrome and Gaucher disease. The cell lines expressed stem cell markers and had a normal karyotype. PGD is an effective technique for avoiding genetic transmission of lysosomal storage disorders and generating disease-specific stem cell lines.