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Intelligent technology for 
automating digitisation 
Tero Mononen, European GBIF Nodes Meeting 2013, 6.3.2013, Joensuu
Technology 
● Basis 
○ Maximizing digitisation throughput 
by automating all possible 
○ Cost-effective 
○ Adaptive, modular 
○ COTS components 
● Main components 
○ Conveyor belt system 
○ Digital cameras 
○ PCs 
● Digitisation environment 
○ Servers 
○ Network communication
Digitisation tiers 
Operator tier 
Data tier 
Server backend 
Automation tier 
Photography 
camera pool 
Digitisation 
controller 
Transportation 
controller 
Photography 
camera 
controller 
DBs Storage 
FS 
WEB Services 
User interface 
TCP/IP networking 
Live camera pool
User interface
Machine vision 
● Based on 1280 x 800 px real-time video 
stream 
● Above the conveyor belt 
● 10 FPS
Machine vision 
Plant example
Machine vision 
Insect example
Image analysis 
6048 x 4032 px
Modes 
Building sample specific functionalities 
● A Mode is a predefined series of actions in 
digitisation for specific sample type 
● Currently implemented modes 
○ Plant mode 
■ Two photos per sample (top and bottom) 
■ 1 cm overlapping area 
○ Insect mode 
■ Search of insects and focusing points 
■ Two photos per insect (insect and labels)
Results 
● Production started on 18.2.2013 
● 120 samples per hour 
● About 10,000 plant samples digitised
to be continued in demonstration... 
Thank you!

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European GBIF nodes meeting 2013: Intelligent technology for automating digitisation

  • 1. Intelligent technology for automating digitisation Tero Mononen, European GBIF Nodes Meeting 2013, 6.3.2013, Joensuu
  • 2. Technology ● Basis ○ Maximizing digitisation throughput by automating all possible ○ Cost-effective ○ Adaptive, modular ○ COTS components ● Main components ○ Conveyor belt system ○ Digital cameras ○ PCs ● Digitisation environment ○ Servers ○ Network communication
  • 3. Digitisation tiers Operator tier Data tier Server backend Automation tier Photography camera pool Digitisation controller Transportation controller Photography camera controller DBs Storage FS WEB Services User interface TCP/IP networking Live camera pool
  • 5. Machine vision ● Based on 1280 x 800 px real-time video stream ● Above the conveyor belt ● 10 FPS
  • 9. Modes Building sample specific functionalities ● A Mode is a predefined series of actions in digitisation for specific sample type ● Currently implemented modes ○ Plant mode ■ Two photos per sample (top and bottom) ■ 1 cm overlapping area ○ Insect mode ■ Search of insects and focusing points ■ Two photos per insect (insect and labels)
  • 10. Results ● Production started on 18.2.2013 ● 120 samples per hour ● About 10,000 plant samples digitised
  • 11. to be continued in demonstration... Thank you!