Match each term with its description or main characteristic(s). Gamma distance correction A. based directly on the sequence alignment. minimizes the number of mutations required to reconstruct the Jukes-Cantor phylogeny. Kimura two-parameter model B. models variation in mutation rates a different sequence OTU positions C. Evolutionary relationship between fax is shown but the unrooted tree last common ancestor is not identified. ultrametric tree D. a constant rate of mutation (molecular clock) is outgroup assumed along all branches. bootstrap analysis E. collection of taxonomic objects grouped together in a phylogenetic tree p-distance F. mutations (typically after a gene duplication transversion event) cause a loss of the ability to produce protein product Synonymous mutation G. mutation of a purine to a pyrimidine, or vice versa. pseudogenes H. Used to convert an unrooted tree to a rooted tree by synteny inclusion of a group of homologous sequences from Maximum parsimony species or genes that are distantly related to the taxa in the unrooted tree. 1. gene order J. Distinguishes between rates of transitions vs. transversions, K. Substitution of a DNA nucleotide without a change in the encoded amino acid. L. Support of tree branches are calculated by repeating tree construction from different samplings of the dataset. M. fraction of mismatches in the alignment of two sequences. N. Assumes mutations at different sites to be independent and identically distributed. Uses a substitution rate matrix to model substitution rates from one nucleotide to another..

1. Match each term with its description or main characteristic(s). Gamma distance correction A.
based directly on the sequence alignment. minimizes the number of mutations required to
reconstruct the Jukes-Cantor phylogeny. Kimura two-parameter model B. models variation in
mutation rates a different sequence OTU positions C. Evolutionary relationship between fax is
shown but the unrooted tree last common ancestor is not identified. ultrametric tree D. a constant
rate of mutation (molecular clock) is outgroup assumed along all branches. bootstrap analysis E.
collection of taxonomic objects grouped together in a phylogenetic tree p-distance F. mutations
(typically after a gene duplication transversion event) cause a loss of the ability to produce protein
product Synonymous mutation G. mutation of a purine to a pyrimidine, or vice versa. pseudogenes
H. Used to convert an unrooted tree to a rooted tree by synteny inclusion of a group of
homologous sequences from Maximum parsimony species or genes that are distantly related to
the taxa in the unrooted tree. 1. gene order J. Distinguishes between rates of transitions vs.
transversions, K. Substitution of a DNA nucleotide without a change in the encoded amino acid. L.
Support of tree branches are calculated by repeating tree construction from different samplings of
the dataset. M. fraction of mismatches in the alignment of two sequences. N. Assumes mutations
at different sites to be independent and identically distributed. Uses a substitution rate matrix to
model substitution rates from one nucleotide to another.