MASS SPECTROSCOPY
PRESENTED BY
Lok Raj Bhandari
Asst. Professor
M.Pharma,MBA
KU
Basic Theory
Instrumentation
Working
•In a typical procedure, a sample, which may be solid, liquid, or gas,
is ionized, for example by bombarding it with electrons.
•This may cause some of the sample’s molecules to break into
charged fragments. These ions are then separated according to their
mass-to-charge ratio, typically by accelerating them and subjecting
them to an electric or magnetic field:
•Ions of the same mass-to-charge ratio will undergo the same
amount of deflection.
•The ions are detected by a mechanism capable of detecting charged
particles, such as an electron multiplier. Results are displayed as
spectra of the relative abundance of detected ions as a function of
the mass-to-charge ratio.
•The atoms or molecules in the sample can be identified by
correlating known masses (e.g. an entire molecule) to the identified
Detectors
Mass spectrometry detectors are vital for identifying and
quantifying compounds by measuring their mass-to-charge ratios.
Here are some common types of detectors used in mass
spectrometry:
1.Electron Multiplier Detector (EMD): Amplifies the signal of ions
by converting them into electrons.
2.Faraday Cup Detector: Captures ions directly and measures the
resulting current, providing high accuracy.
3.Photomultiplier Tube (PMT): Converts ions into light photons and
then into electrons for signal amplification.
4.Microchannel Plate Detector (MCP): Uses an array of tiny
channels to amplify the ion signal through secondary electron
emission.
Detector
5.Time-of-Flight (TOF) Detector: Measures the time it
takes for ions to travel a set distance, offering high
mass accuracy.
6.Quadrupole Detector: Utilizes oscillating electric
fields to filter ions by their mass-to-charge ratio.
7.Orbitrap Detector: Traps ions in an electrostatic field
and measures their oscillation frequencies for high-
resolution mass analysis.
8.Ion Trap Detector: Traps ions using electric or
magnetic fields and sequentially releases them for
detection.
Photomultiplier conversion dynode
Index of Hydrogen Deficiency (IHD)
In a hydrocarbon where all the C atoms have only single bonds and no rings are
involved, the compound would have the maximum number of H atoms. If any of the
bonds are replaced with double or triple bonds, or if rings are involved, there would be a
“deficiency” of H atoms. By calculating the index of hydrogen deficiency (IHD), we can
tell from the molecular formula whether and how many multiple bonds and rings are
involved. IHD is also called the Degree of Unstaturation. This will help cut down the
possibilities one has to consider in trying to come up with all the isomers of a given
formula.
Here is a summary of how the index of hydrogen deficiency (IHD) works.
•A double bond and ring each counts as one IHD.
•A triple bond counts as two IHD.
Hydrocarbons (CxHy):
IHD for C2H4C2H4 is
IHD for C4H6C4H6 is
Nitrogen Rule
• The nitrogen rule states that a molecule that has no or even
number of nitrogen atoms has an even nominal mass whereas a
molecule that has an odd number of nitrogen atoms has an odd
nominal mass.
Nitrogen Rule
Time of Flight MS
• Time-of-flight mass spectrometry, commonly known as
TOF MS, is a detection method for gas-phase ions that
determines their mass-to-charge ratio (m/z) based on
measuring how quickly they travel a known distance.
This is a common form of mass spectrometry, where all particles
of the sample to be analysed are ionised to form 1+ ions.
These 1+ ions are then accelerated to high speeds, deflected
through the spectrometer and then arrive at the detector
As they hit the detector, the mass spectrum graph is produced
The whole of the apparatus is kept under a high vacuum to
prevent any ions that are produced from colliding with
molecules in the air
Applications
•Environmental monitoring and analysis (soil, water, and air
pollutants, water quality, etc.)
•Geochemistry – age determination, soil, and rock composition, oil
and gas surveying
•Chemical and Petrochemical industry – Quality control
•Identify structures of biomolecules, such as carbohydrates, nucleic
acids
•Sequence biopolymers such as proteins and oligosaccharides
•Determination of the molecular mass of peptides, proteins, and
oligonucleotides.
•Monitoring gases in patients’ breath during surgery.
•Identification of drug abuse and metabolites of drugs of abuse in
blood, urine, and saliva.
•Analyses of aerosol particles.
•Determination of pesticides residues in food.

Mass Spectroscopy(MS)Instrumental Analysis

  • 1.
    MASS SPECTROSCOPY PRESENTED BY LokRaj Bhandari Asst. Professor M.Pharma,MBA KU
  • 7.
  • 13.
  • 16.
    Working •In a typicalprocedure, a sample, which may be solid, liquid, or gas, is ionized, for example by bombarding it with electrons. •This may cause some of the sample’s molecules to break into charged fragments. These ions are then separated according to their mass-to-charge ratio, typically by accelerating them and subjecting them to an electric or magnetic field: •Ions of the same mass-to-charge ratio will undergo the same amount of deflection. •The ions are detected by a mechanism capable of detecting charged particles, such as an electron multiplier. Results are displayed as spectra of the relative abundance of detected ions as a function of the mass-to-charge ratio. •The atoms or molecules in the sample can be identified by correlating known masses (e.g. an entire molecule) to the identified
  • 22.
    Detectors Mass spectrometry detectorsare vital for identifying and quantifying compounds by measuring their mass-to-charge ratios. Here are some common types of detectors used in mass spectrometry: 1.Electron Multiplier Detector (EMD): Amplifies the signal of ions by converting them into electrons. 2.Faraday Cup Detector: Captures ions directly and measures the resulting current, providing high accuracy. 3.Photomultiplier Tube (PMT): Converts ions into light photons and then into electrons for signal amplification. 4.Microchannel Plate Detector (MCP): Uses an array of tiny channels to amplify the ion signal through secondary electron emission.
  • 23.
    Detector 5.Time-of-Flight (TOF) Detector:Measures the time it takes for ions to travel a set distance, offering high mass accuracy. 6.Quadrupole Detector: Utilizes oscillating electric fields to filter ions by their mass-to-charge ratio. 7.Orbitrap Detector: Traps ions in an electrostatic field and measures their oscillation frequencies for high- resolution mass analysis. 8.Ion Trap Detector: Traps ions using electric or magnetic fields and sequentially releases them for detection.
  • 24.
  • 45.
    Index of HydrogenDeficiency (IHD) In a hydrocarbon where all the C atoms have only single bonds and no rings are involved, the compound would have the maximum number of H atoms. If any of the bonds are replaced with double or triple bonds, or if rings are involved, there would be a “deficiency” of H atoms. By calculating the index of hydrogen deficiency (IHD), we can tell from the molecular formula whether and how many multiple bonds and rings are involved. IHD is also called the Degree of Unstaturation. This will help cut down the possibilities one has to consider in trying to come up with all the isomers of a given formula. Here is a summary of how the index of hydrogen deficiency (IHD) works. •A double bond and ring each counts as one IHD. •A triple bond counts as two IHD.
  • 46.
    Hydrocarbons (CxHy): IHD forC2H4C2H4 is IHD for C4H6C4H6 is
  • 47.
    Nitrogen Rule • Thenitrogen rule states that a molecule that has no or even number of nitrogen atoms has an even nominal mass whereas a molecule that has an odd number of nitrogen atoms has an odd nominal mass.
  • 48.
  • 50.
    Time of FlightMS • Time-of-flight mass spectrometry, commonly known as TOF MS, is a detection method for gas-phase ions that determines their mass-to-charge ratio (m/z) based on measuring how quickly they travel a known distance.
  • 51.
    This is acommon form of mass spectrometry, where all particles of the sample to be analysed are ionised to form 1+ ions. These 1+ ions are then accelerated to high speeds, deflected through the spectrometer and then arrive at the detector As they hit the detector, the mass spectrum graph is produced The whole of the apparatus is kept under a high vacuum to prevent any ions that are produced from colliding with molecules in the air
  • 73.
    Applications •Environmental monitoring andanalysis (soil, water, and air pollutants, water quality, etc.) •Geochemistry – age determination, soil, and rock composition, oil and gas surveying •Chemical and Petrochemical industry – Quality control •Identify structures of biomolecules, such as carbohydrates, nucleic acids •Sequence biopolymers such as proteins and oligosaccharides •Determination of the molecular mass of peptides, proteins, and oligonucleotides. •Monitoring gases in patients’ breath during surgery. •Identification of drug abuse and metabolites of drugs of abuse in blood, urine, and saliva. •Analyses of aerosol particles. •Determination of pesticides residues in food.