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CAVAL-ANDS Workshop
28 July 2017
Libraries/librarians haven't been a part of my
research workflow, but perhaps they should be?
Overview
Stemformatics is...
Introduction story (of how spoiled we are)
Numbers around Project Grandiose
Where are the gaps?
How I see the future? No idea but...
Stemformatics is...
- A web based pocket dictionary for stem cell
biologists
- An atlas and benchmarking of public datasets
- A host of private datasets
- A resource to help researchers share their data
Explaining ANDS
“I didn’t realise how spoiled we
were”
Numbers around Project Grandiose
Project Grandiose
- 2 Nature & 3 Nature communication papers
- 50 scientists
- 13 datasets
- 9 labs
- 6 dataset types
- 3 years
- 0 librarians
Digital Dataset Respositories
- Out of the 6 data types, all were handled by
international digital dataset repositories
- miRNA, microarray, RNASeq and ChIPSeq stored
in GEO/SRA (NIH)
- Methylation stored in ENA (EBI)
- Proteomics stored in ProteomeXchange
Where are the gaps?
Overflowing with data
- ontologies
- handling exceptions
- requests outweigh our resources
- already scared about single cell RNASeq
- microarray 1GB
- RNASeq 1TB
- single cell RNASeq 5TB+ (on the low end)
Librarians haven't been a part of my
research workflow, but perhaps they
should be?
Based on the way I understand what
librarians do the answer is...
How I see the future? No idea but...
Looking at the program….
- Connect eResearch Infrastructure
- Communities together
- Connecting with IT
- Building relationships and services
- Domain driven
- Data savvy
- Data inclusion
Remove libraries/librarians and
that looks like a workshop from an
eResearch conference
Acknowledgements
UoM
Christine Wells
Rowland Mosbergen
Tyrone Chen
Jarny Choi
Elizabeth Mason
Suzanne Butcher
Kim-Anh Lê Cao
Isha Nagpal
Chris Pacheco Rivera
Ariane Mora
AIBN
Othmar Korn
Steve Englart

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Libraries and research data managements: Rowland Mosbergen and the researcher perspective