Marine trait data within EOL: structure
and statistics
Jen Hammock1, Katja Schulz1, Jorrit Poelen2
1- Smithsonian’s National Museum of Natural History
2- Global Biotic Interactions
Global Access to Knowledge About Life on Earth
http://eol.org/data_search
Structured data service
http://eol.org/info/traitbank_api
Resource file structure, modified
Darwin Core Archive
Example
Example: tissue mineralization
biogeography
Example: tissue mineralization
biogeography
Example: tissue mineralization
biogeography
• 70,106 hits out of 130,160 OBIS records
• 3659 out of 7943 taxa
Example: tissue mineralization
biogeography
• ~500,000 trait records total in EOL
• for ~290,000 taxa
• inferred from 178 taxonomic nodes
according to WoRMS and AlgaeBase
• Also available: crystal structure,
derivative compounds…
Marine data estimates
Large datasets
 OBIS environmental data ranges (155,000 taxa)
 WoRMS distribution keywords
 Habitat keywords textmined from EOL
 Ecological associations data, GloBI & GoMexSI (78,000 records)
 Tissue mineralization (290,000 taxa)
 Type specimen repository (~50,000 taxa)
Small datasets
 Copepod life history and size
 Phytoplankton cell mass, volume, shape
 PolyTraits- polychaete life history, physical description
 Mollusk shell dimensions
See all datasets
GloBI: Global Biotic
Interactions
http://www.globalbioticinteractions.org/browse/
http://www.globalbioticinteractions.org/browse/
http://www.globalbioticinteractions.org/browse/
https://github.com/jhpoelen/eol-globi-data/wiki
Thanks!
This work was supported by:
 The Smithsonian’s National Museum of Natural History
 The Sloan Foundation
 David M. Rubenstein
Jen: hammockj@si.edu

EMODnet 2015

Editor's Notes

  • #7 Taxon selection currently checks Catalog of Life and NCBI. When available, it will use our new consensus classification, to be based closely on Open Tree of Life.
  • #9 Taxon selection currently checks Catalog of Life and NCBI. When available, it will use our new consensus classification, to be based closely on Open Tree of Life.
  • #16 Don’t need details, eg: WoRMS propagation
  • #17 Don’t need details, eg: WoRMS propagation
  • #18 Don’t need details, eg: WoRMS propagation
  • #19 Where did these come from? Andrew Barton, Nick Record, Sarah Faulwetter and colleagues, LifeWatch Greece, Craig McLean, Nescent, Femorale
  • #25 Call to action! Use data or contribute data. Contact Jen