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Compound design, synthesis and
progression tracking with CROs
Jenny Viklund
Working with CROs: pros and cons
Administrative burden
CRO: Contract Research Organization
FTE: Full Time Employee
Easy to scale FTE
External system (for CRO)
• Files
• E-mails
PARTS of what to synthesize
Who
Priorities
Comments
Etc…
Current situation:
Internal
synthesis
Project information
Analysis
What to synthesize
Who
Priorities
Comments
Etc…
Internal system
• DMTA
• Database
Structures,
Batches, samples
Purity, amount
Assay-data
Etc…
External
synthesis
Data
Documentation
Shipping information
Etc…
Grey arrows are indicating
where additional administration
appear, when using additional
systems outside of the internal
systems.
Additional communication
channels such as emails may
risk that information gets lost.
Solution
Apply flexible settings for what to
share with external collaborator
within your internal system.
Select parts of your…
• Projects
• Compounds
• Computational tools for design
On an individual or company basis Internal
and External
Easy to scale FTE
No administrative burden
Using the tool
…from the Internal Company Perspective…
Example of synthesis tracking
workflow
1. Keep track of all compounds
in your project in one place
2. Select compounds for
synthesis to the CRO: they will
only see their assigned
compounds
3. Write the details of your
request in the “Description
window”
4. Discuss compound-related
matters using the
“Comments”
5. Get notifications when the
compounds are synthesized
6. Download the structures and
meta-data into your own
database (see point 3 on the
next slide)
you can also use these fields
to communicate within your
own organization
1
5
6
4
2
3
…and from the CRO Perspective
Example of CRO
Workflow
1. See only the compounds and
information assigned to you
2. Discuss with the drug discovery
company, ask your clarifying
questions in the “Comments”
window
3. Write the details of your results
in the customizable “Additional
fields”
4. Share links to your ELN
5. Show your advancements by
moving the compounds to the
next level, as you are
progressing with your synthesis
Depending on the level of
collaboration, the CRO can
also use this tool to track
assay requests or add their
own designed compounds to
the KanBan board
1
5
2
3
4
Technical Part
Technology details
Security of data
• Single tenant, AWS
• Region affinity: choose country to store data
• ISO certifications
Custom settings in <5 days, select what to share:
• Projects
• Compounds
• Computational tools for design
• On individual or company basis
Costs are carried by Internal company
• Add, remove CROs at your convenience
Internal
CRO
Jenny Viklund
jviklund@chemaxon.com
https://chemaxon.com/products/design-hub

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Compound design and progression tracking with CROs

  • 1. Compound design, synthesis and progression tracking with CROs Jenny Viklund
  • 2. Working with CROs: pros and cons Administrative burden CRO: Contract Research Organization FTE: Full Time Employee Easy to scale FTE
  • 3. External system (for CRO) • Files • E-mails PARTS of what to synthesize Who Priorities Comments Etc… Current situation: Internal synthesis Project information Analysis What to synthesize Who Priorities Comments Etc… Internal system • DMTA • Database Structures, Batches, samples Purity, amount Assay-data Etc… External synthesis Data Documentation Shipping information Etc… Grey arrows are indicating where additional administration appear, when using additional systems outside of the internal systems. Additional communication channels such as emails may risk that information gets lost.
  • 4. Solution Apply flexible settings for what to share with external collaborator within your internal system. Select parts of your… • Projects • Compounds • Computational tools for design On an individual or company basis Internal and External Easy to scale FTE No administrative burden
  • 6. …from the Internal Company Perspective… Example of synthesis tracking workflow 1. Keep track of all compounds in your project in one place 2. Select compounds for synthesis to the CRO: they will only see their assigned compounds 3. Write the details of your request in the “Description window” 4. Discuss compound-related matters using the “Comments” 5. Get notifications when the compounds are synthesized 6. Download the structures and meta-data into your own database (see point 3 on the next slide) you can also use these fields to communicate within your own organization 1 5 6 4 2 3
  • 7. …and from the CRO Perspective Example of CRO Workflow 1. See only the compounds and information assigned to you 2. Discuss with the drug discovery company, ask your clarifying questions in the “Comments” window 3. Write the details of your results in the customizable “Additional fields” 4. Share links to your ELN 5. Show your advancements by moving the compounds to the next level, as you are progressing with your synthesis Depending on the level of collaboration, the CRO can also use this tool to track assay requests or add their own designed compounds to the KanBan board 1 5 2 3 4
  • 9. Technology details Security of data • Single tenant, AWS • Region affinity: choose country to store data • ISO certifications Custom settings in <5 days, select what to share: • Projects • Compounds • Computational tools for design • On individual or company basis Costs are carried by Internal company • Add, remove CROs at your convenience Internal CRO