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Power-law contribution of the kinetic energy of
reversible self-assembly worm-like chain in
thermal bath.
PhD Student Andrii S. Lukianets
Head of department Pyotr M. Tomchuk
Theoretical Physics | Institute of Physics NASU
”
October 13, 2015
Statistical theory of polymer growth: predictions
𝐻 =
𝑛
𝑈𝑐𝑜𝑛𝑓 𝑟𝑛 +
𝑛
𝐾( 𝑣 𝑛) 2
𝑛
a. The product of aggregation is one-dimensional inextensible worm-like chain. b. Dependence of the total number of dye molecules in all n-mers on the length.
𝑐 𝑛
𝑍 = 𝑒𝑥𝑝
−𝐻
𝑘𝑇
98% of all boos that deals with Polymer Physics
1
Aggregation phenomena and chain conformation
c. The product of aggregation is a rigid rod. d. Partition function renormalization.
Statistical mechanics of aggregation in anisotropic solvents: kinetic energy of aggregates and universal power-law behavior far from criticality/ Pergamenshchik
𝑐 𝑛
𝑛
Kinetic energy contribution
Only Potential energy
𝐻 =
𝑛
𝐻 𝑛 =
𝑛
𝑈𝑐𝑜𝑛𝑓
𝑛
+ 𝐾𝑡𝑟
𝑛
+ 𝐾𝑟𝑜𝑡
𝑛
+ 𝐾𝑓𝑙𝑒𝑥
𝑛
+ 𝑖𝑛𝑡 𝑍 𝑎,𝑛 =
1
𝑁𝐶 𝑛 !
𝜈𝑛 𝑞 𝑒 𝑛−1 𝜀/𝑘𝑇 𝑁𝐶 𝑛
𝜀
43
The motion of a polymer in a solution
= 𝐵−1
𝑛 𝑞
𝑒−𝑛(𝜑−𝜀/𝑘𝑇)
Principled contribution of the kinetic energy
Self-intersection
Modeling and attempts of description:
Kinetic energy contribution to the partition function
e. System modeling
5
𝑑𝑝 𝑒𝑥𝑝 −
𝑝2
2𝑚
~𝑚
1
2~𝑛
1
2
Coupled pendulums
𝐾 =
𝑚𝑙2
2
𝑘=1
𝑁−1
𝑁 − 𝑘 𝝋 𝒌
2 +
𝑘=2
𝑁−1
2 𝑁 − 𝑘
𝑘=2
𝑘−1
𝝋𝒊 𝝋 𝒌 cos(𝝋𝒊 − 𝝋 𝒌) 7
𝐾 =
𝑚
2
𝑛=1
𝑁
𝑹 𝒏
2
𝑅 𝑛 = 𝑅1 +
𝑛=1
𝑁−1
𝑟𝑖 𝑟𝑖 = 𝑃𝑖, 𝑃𝑖+1
6
Attempt #1: Kinetic energy of freely jointed chain
𝑦
𝑥
𝑹 𝒏
𝑹 𝒏+𝟏
𝑹 𝑵
𝒓𝒊 𝝋 𝑵−𝟏
h. System consists
of N-beads
connected by N-1
links of fixed length
𝒑𝒊 =
𝜕𝐻
𝜕 𝝋𝒊
8
𝜓(𝑅0, 𝑅𝑓, 𝑡𝑓) = 𝐴
𝑅0
𝑅 𝑓
𝒟𝑹 𝑡 𝑒𝑥𝑝 −
0
𝑡 𝑓
𝑹 𝒏
𝟐
𝑡
4𝐷
𝑑𝑡
𝜕𝜓
𝜕𝑡
= 𝐷2
𝜕𝜓2
𝜕𝑅2
𝜓 = 𝐶
𝑛=1
𝑁
𝑅0
𝑅 𝑓
𝒟𝑹 𝒏 𝑡 𝑒𝑥𝑝 −
𝑀
4𝑘𝑇𝜏𝐿
𝑛=1
𝑁
𝑎
0
𝑡 𝑓
𝑹 𝒏
𝟐
𝑡 𝑑𝑡
𝑛=2
𝑁
𝜹
𝑹 𝒏 𝑡 − 𝑹 𝒏−𝟏 𝑡 2
𝑎2 − 1
Dynamics of a three-dimensional inextensible chain/ Ferrari, Paturej, Vilgis
10
9
11
Brownian particles: constrains
𝑅0
𝑅𝑓
Attempt #2: Path integral approach to the dynamics of a polymer chain
g. Brownian particle in motion
𝑍 𝑎 = 𝒟𝒓𝑖 𝒟𝒗𝒊 𝑒𝑥𝑝 −
𝑖
𝑚
2𝑘𝑇
𝒗𝑖
2
𝑹 𝒏
𝑹 𝒏+𝟏
𝒓𝒊
𝒗𝒊+𝟏
𝒗𝒊
12
Path integral form
13
𝑖=1
𝑁−1
𝜹 𝒓𝑖(𝝊𝑖+1 − 𝝊𝑖)
Attempt #3: Path integral approach to the motion of a polymer chain
g. Constrained trajectories
𝑍 𝑎,𝑣 = 𝐴
𝑖=1
𝑁−1
𝜋
𝛼𝑖
𝛼𝑖+1 = 1 +
𝑐𝑜𝑠2 𝜑𝑖,𝑖+1
4𝛼𝑖
𝛼1 = 1
𝑹 𝒏
𝑹 𝒏+𝟏
𝒓𝒊
𝒗𝒊+𝟏
𝒗𝒊
𝑍 𝑎,𝑣 =
𝜋
2
1
𝑙
𝑁−1
2𝑘𝑇𝜋
𝑚
𝑁+1
2
𝜋
𝑁−1
2 1 +
1
4
𝑖=1
𝑁−2
𝑐𝑜𝑠2 𝜑𝑖,𝑖+1
−
1
2
14
Estimation:
15
Path integral approach to the motion of a polymer chain
𝑐𝑜𝑠2
𝜑𝑖,𝑖+1
4
≤
1
4
Thanks

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Analytical modeling of polymer dynamics in a solution.

  • 1. Power-law contribution of the kinetic energy of reversible self-assembly worm-like chain in thermal bath. PhD Student Andrii S. Lukianets Head of department Pyotr M. Tomchuk Theoretical Physics | Institute of Physics NASU ” October 13, 2015
  • 2. Statistical theory of polymer growth: predictions 𝐻 = 𝑛 𝑈𝑐𝑜𝑛𝑓 𝑟𝑛 + 𝑛 𝐾( 𝑣 𝑛) 2 𝑛 a. The product of aggregation is one-dimensional inextensible worm-like chain. b. Dependence of the total number of dye molecules in all n-mers on the length. 𝑐 𝑛 𝑍 = 𝑒𝑥𝑝 −𝐻 𝑘𝑇 98% of all boos that deals with Polymer Physics 1 Aggregation phenomena and chain conformation
  • 3. c. The product of aggregation is a rigid rod. d. Partition function renormalization. Statistical mechanics of aggregation in anisotropic solvents: kinetic energy of aggregates and universal power-law behavior far from criticality/ Pergamenshchik 𝑐 𝑛 𝑛 Kinetic energy contribution Only Potential energy 𝐻 = 𝑛 𝐻 𝑛 = 𝑛 𝑈𝑐𝑜𝑛𝑓 𝑛 + 𝐾𝑡𝑟 𝑛 + 𝐾𝑟𝑜𝑡 𝑛 + 𝐾𝑓𝑙𝑒𝑥 𝑛 + 𝑖𝑛𝑡 𝑍 𝑎,𝑛 = 1 𝑁𝐶 𝑛 ! 𝜈𝑛 𝑞 𝑒 𝑛−1 𝜀/𝑘𝑇 𝑁𝐶 𝑛 𝜀 43 The motion of a polymer in a solution = 𝐵−1 𝑛 𝑞 𝑒−𝑛(𝜑−𝜀/𝑘𝑇) Principled contribution of the kinetic energy Self-intersection
  • 4. Modeling and attempts of description: Kinetic energy contribution to the partition function e. System modeling 5 𝑑𝑝 𝑒𝑥𝑝 − 𝑝2 2𝑚 ~𝑚 1 2~𝑛 1 2
  • 5. Coupled pendulums 𝐾 = 𝑚𝑙2 2 𝑘=1 𝑁−1 𝑁 − 𝑘 𝝋 𝒌 2 + 𝑘=2 𝑁−1 2 𝑁 − 𝑘 𝑘=2 𝑘−1 𝝋𝒊 𝝋 𝒌 cos(𝝋𝒊 − 𝝋 𝒌) 7 𝐾 = 𝑚 2 𝑛=1 𝑁 𝑹 𝒏 2 𝑅 𝑛 = 𝑅1 + 𝑛=1 𝑁−1 𝑟𝑖 𝑟𝑖 = 𝑃𝑖, 𝑃𝑖+1 6 Attempt #1: Kinetic energy of freely jointed chain 𝑦 𝑥 𝑹 𝒏 𝑹 𝒏+𝟏 𝑹 𝑵 𝒓𝒊 𝝋 𝑵−𝟏 h. System consists of N-beads connected by N-1 links of fixed length 𝒑𝒊 = 𝜕𝐻 𝜕 𝝋𝒊 8
  • 6. 𝜓(𝑅0, 𝑅𝑓, 𝑡𝑓) = 𝐴 𝑅0 𝑅 𝑓 𝒟𝑹 𝑡 𝑒𝑥𝑝 − 0 𝑡 𝑓 𝑹 𝒏 𝟐 𝑡 4𝐷 𝑑𝑡 𝜕𝜓 𝜕𝑡 = 𝐷2 𝜕𝜓2 𝜕𝑅2 𝜓 = 𝐶 𝑛=1 𝑁 𝑅0 𝑅 𝑓 𝒟𝑹 𝒏 𝑡 𝑒𝑥𝑝 − 𝑀 4𝑘𝑇𝜏𝐿 𝑛=1 𝑁 𝑎 0 𝑡 𝑓 𝑹 𝒏 𝟐 𝑡 𝑑𝑡 𝑛=2 𝑁 𝜹 𝑹 𝒏 𝑡 − 𝑹 𝒏−𝟏 𝑡 2 𝑎2 − 1 Dynamics of a three-dimensional inextensible chain/ Ferrari, Paturej, Vilgis 10 9 11 Brownian particles: constrains 𝑅0 𝑅𝑓 Attempt #2: Path integral approach to the dynamics of a polymer chain g. Brownian particle in motion
  • 7. 𝑍 𝑎 = 𝒟𝒓𝑖 𝒟𝒗𝒊 𝑒𝑥𝑝 − 𝑖 𝑚 2𝑘𝑇 𝒗𝑖 2 𝑹 𝒏 𝑹 𝒏+𝟏 𝒓𝒊 𝒗𝒊+𝟏 𝒗𝒊 12 Path integral form 13 𝑖=1 𝑁−1 𝜹 𝒓𝑖(𝝊𝑖+1 − 𝝊𝑖) Attempt #3: Path integral approach to the motion of a polymer chain g. Constrained trajectories 𝑍 𝑎,𝑣 = 𝐴 𝑖=1 𝑁−1 𝜋 𝛼𝑖 𝛼𝑖+1 = 1 + 𝑐𝑜𝑠2 𝜑𝑖,𝑖+1 4𝛼𝑖 𝛼1 = 1
  • 8. 𝑹 𝒏 𝑹 𝒏+𝟏 𝒓𝒊 𝒗𝒊+𝟏 𝒗𝒊 𝑍 𝑎,𝑣 = 𝜋 2 1 𝑙 𝑁−1 2𝑘𝑇𝜋 𝑚 𝑁+1 2 𝜋 𝑁−1 2 1 + 1 4 𝑖=1 𝑁−2 𝑐𝑜𝑠2 𝜑𝑖,𝑖+1 − 1 2 14 Estimation: 15 Path integral approach to the motion of a polymer chain 𝑐𝑜𝑠2 𝜑𝑖,𝑖+1 4 ≤ 1 4