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BioMed Central
Page 1 of 2
(page number not for citation purposes)
Molecular Cancer
Open AccessEditorial
To know or not to know: archiving and the under-appreciated
historical value of data
David Covarrubias1, Maurice Van Emburgh1, Hassan R Naqvi1,
Christian Schmidt*1,2 and Shawn Mathur1
Address: 1Section of Molecular Genetics and Microbiology and Institute for Cellular and Molecular Biology, University of Texas, 1 University
Station, A 5000, Austin, TX 78712, USA and 2Molecular Cancer, Biomed Central Ltd., Middlesex House, 34-42 Cleveland Street, London W1T 4LB,
UK
Email: David Covarrubias - dcovarrubias@mail.utexas.edu; Maurice Van Emburgh - mve@mail.utexas.edu;
Hassan R Naqvi - naqvi@mail.utexas.edu; Christian Schmidt* - schmidt102@gmail.com; Shawn Mathur - shawn.mathur@mail.utexas.edu
* Corresponding author
Abstract
Surplus goods, produced by a community, allow individuals to dedicate their efforts to abstract
problems, while enjoying the benefits of support from the community. In return, the community
benefits from the intellectual work, say, efficiently producing goods or profound medical aid. In
further elevating quality of life, we need to understand nature and biology on the most detailed
level. Inevitably, research costs are increasing along with the need for more scientists to specialize
their efforts. As a result, a vast amount of data and information is generated that needs to be
archived and made openly accessible with the permission to re-use and re-distribute. With
economies undergoing crises and prosperity in an almost cyclic manner, it seems that funding for
science and technology follows a similar pattern. Another aspect to the problem of the loss of data
is the human propensity, at the level of each individual researcher, to passively discard data in the
course of daily life and through a career. In a typical laboratory, significant amounts of information
is still stored on disks in file cabinets or on isolated computers, and is lost when a research group
disbands. Being conscientious to one's data, to see that it reaches a place in which it can persist
beyond the lifespan of any one individual requires responsibility on the part of its creator.
Editorial
What is progress? In a plain way, progress is an advance
over an existing level. To obtain a quantifiable resolution,
it is necessary to have references and contexts. References
and contexts may comprise a fair number of data and ref-
erences themselves. Where to start and what to consider?
A comprehensive answer, consequently, requires an infi-
nite amount of data and corresponding contexts. Ergo,
each datum and context must be verifiable referenced and
analyzed. Inevitably, the definition of progress requires a
well-organized archive. How much effort is directed
towards archiving? Furthermore, are enough resources
available for maintaining data and documents? How can
data that is stored in defunct formats and only accessible
by obsolete programs be viably maintained for historical
research? Is there sufficient support by and benefit for a
society associated with such an activity?
Reversing the point of view, is the stored information
appreciated and accessible? Taking it further, do we know
Published: 11 February 2008
Molecular Cancer 2008, 7:18 doi:10.1186/1476-4598-7-18
Received: 28 January 2008
Accepted: 11 February 2008
This article is available from: http://www.molecular-cancer.com/content/7/1/18
© 2008 Covarrubias et al; licensee BioMed Central Ltd.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0),
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Publish with BioMed Central and every
scientist can read your work free of charge
"BioMed Central will be the most significant development for
disseminating the results of biomedical research in our lifetime."
Sir Paul Nurse, Cancer Research UK
Your research papers will be:
available free of charge to the entire biomedical community
peer reviewed and publishedimmediately upon acceptance
cited in PubMed and archived on PubMed Central
yours — you keep the copyright
Submit your manuscript here:
http://www.biomedcentral.com/info/publishing_adv.asp
BioMedcentral
Molecular Cancer 2008, 7:18 http://www.molecular-cancer.com/content/7/1/18
Page 2 of 2
(page number not for citation purposes)
what we have lost over time? Can we afford to selectively
archive what we are able to preserve for future genera-
tions? Things we may not appreciate at this moment, take
as given or consider as not suitable for in-depth investiga-
tion, are nevertheless records that could be missed at
some time in the future. Answering the basic question
from the preceding paragraph, there can never be enough
effort in preserving information.
It is now assumed, simply for the sake of the argument,
that there is no conscious selection of contents of an uni-
versal archive; access to this archive is arbitrarily set to
unrestricted. Given that the archive contains a large
number of data, one could mine this treasure for avoid-
ance of costly errors and/or synthesize existing hypotheses
to benefit existing approaches. In essence, are cultural/his-
torical/scientific lessons the true currency of an intercon-
nected society?
Conclusion
Society as a whole has to decide how much resources are
allocated towards preserving existing records, let alone the
problem of failure to extract legacy data (we suggest the
term legacy data extinction) in a technical and philo-
sophical approach. Society as a whole, research groups,
and the individual, each, has responsibility to decide how
much resources are allocated towards preserving existing
records. The problem of maintaining viable legacy data
and the challenge of the human element, each, bear on
preventing legacy data extinction to future humanity, in a
technical and philosophical approach.
Competing interests
DC, MVE, HRN and SM declare that there are no compet-
ing interests. CS is deputy editor of Molecular Cancer and
receives no remuneration for his efforts.
Authors' contributions
CS drafted and finalized this paper. MVE discussed ideas
with CS that ultimately resulted in this paper and pro-
vided insightful critique. DC and SM assisted in gathering
background information.
Acknowledgements
The authors are indebted to Philip W Tucker and Gregory C Ippolito for
reviewing this manuscript prior to submission.

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1476-4598-7-18

  • 1. BioMed Central Page 1 of 2 (page number not for citation purposes) Molecular Cancer Open AccessEditorial To know or not to know: archiving and the under-appreciated historical value of data David Covarrubias1, Maurice Van Emburgh1, Hassan R Naqvi1, Christian Schmidt*1,2 and Shawn Mathur1 Address: 1Section of Molecular Genetics and Microbiology and Institute for Cellular and Molecular Biology, University of Texas, 1 University Station, A 5000, Austin, TX 78712, USA and 2Molecular Cancer, Biomed Central Ltd., Middlesex House, 34-42 Cleveland Street, London W1T 4LB, UK Email: David Covarrubias - dcovarrubias@mail.utexas.edu; Maurice Van Emburgh - mve@mail.utexas.edu; Hassan R Naqvi - naqvi@mail.utexas.edu; Christian Schmidt* - schmidt102@gmail.com; Shawn Mathur - shawn.mathur@mail.utexas.edu * Corresponding author Abstract Surplus goods, produced by a community, allow individuals to dedicate their efforts to abstract problems, while enjoying the benefits of support from the community. In return, the community benefits from the intellectual work, say, efficiently producing goods or profound medical aid. In further elevating quality of life, we need to understand nature and biology on the most detailed level. Inevitably, research costs are increasing along with the need for more scientists to specialize their efforts. As a result, a vast amount of data and information is generated that needs to be archived and made openly accessible with the permission to re-use and re-distribute. With economies undergoing crises and prosperity in an almost cyclic manner, it seems that funding for science and technology follows a similar pattern. Another aspect to the problem of the loss of data is the human propensity, at the level of each individual researcher, to passively discard data in the course of daily life and through a career. In a typical laboratory, significant amounts of information is still stored on disks in file cabinets or on isolated computers, and is lost when a research group disbands. Being conscientious to one's data, to see that it reaches a place in which it can persist beyond the lifespan of any one individual requires responsibility on the part of its creator. Editorial What is progress? In a plain way, progress is an advance over an existing level. To obtain a quantifiable resolution, it is necessary to have references and contexts. References and contexts may comprise a fair number of data and ref- erences themselves. Where to start and what to consider? A comprehensive answer, consequently, requires an infi- nite amount of data and corresponding contexts. Ergo, each datum and context must be verifiable referenced and analyzed. Inevitably, the definition of progress requires a well-organized archive. How much effort is directed towards archiving? Furthermore, are enough resources available for maintaining data and documents? How can data that is stored in defunct formats and only accessible by obsolete programs be viably maintained for historical research? Is there sufficient support by and benefit for a society associated with such an activity? Reversing the point of view, is the stored information appreciated and accessible? Taking it further, do we know Published: 11 February 2008 Molecular Cancer 2008, 7:18 doi:10.1186/1476-4598-7-18 Received: 28 January 2008 Accepted: 11 February 2008 This article is available from: http://www.molecular-cancer.com/content/7/1/18 © 2008 Covarrubias et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
  • 2. Publish with BioMed Central and every scientist can read your work free of charge "BioMed Central will be the most significant development for disseminating the results of biomedical research in our lifetime." Sir Paul Nurse, Cancer Research UK Your research papers will be: available free of charge to the entire biomedical community peer reviewed and publishedimmediately upon acceptance cited in PubMed and archived on PubMed Central yours — you keep the copyright Submit your manuscript here: http://www.biomedcentral.com/info/publishing_adv.asp BioMedcentral Molecular Cancer 2008, 7:18 http://www.molecular-cancer.com/content/7/1/18 Page 2 of 2 (page number not for citation purposes) what we have lost over time? Can we afford to selectively archive what we are able to preserve for future genera- tions? Things we may not appreciate at this moment, take as given or consider as not suitable for in-depth investiga- tion, are nevertheless records that could be missed at some time in the future. Answering the basic question from the preceding paragraph, there can never be enough effort in preserving information. It is now assumed, simply for the sake of the argument, that there is no conscious selection of contents of an uni- versal archive; access to this archive is arbitrarily set to unrestricted. Given that the archive contains a large number of data, one could mine this treasure for avoid- ance of costly errors and/or synthesize existing hypotheses to benefit existing approaches. In essence, are cultural/his- torical/scientific lessons the true currency of an intercon- nected society? Conclusion Society as a whole has to decide how much resources are allocated towards preserving existing records, let alone the problem of failure to extract legacy data (we suggest the term legacy data extinction) in a technical and philo- sophical approach. Society as a whole, research groups, and the individual, each, has responsibility to decide how much resources are allocated towards preserving existing records. The problem of maintaining viable legacy data and the challenge of the human element, each, bear on preventing legacy data extinction to future humanity, in a technical and philosophical approach. Competing interests DC, MVE, HRN and SM declare that there are no compet- ing interests. CS is deputy editor of Molecular Cancer and receives no remuneration for his efforts. Authors' contributions CS drafted and finalized this paper. MVE discussed ideas with CS that ultimately resulted in this paper and pro- vided insightful critique. DC and SM assisted in gathering background information. Acknowledgements The authors are indebted to Philip W Tucker and Gregory C Ippolito for reviewing this manuscript prior to submission.