1. Brainhack results
1. Building a new pipeline
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

2. Brainhack results
With a few steps...
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

3. Brainhack results
1. pre-process fMRI data (AFNI)
2. super-sample and co-register anatomy (FLIRT)
3. segment the brain (CBS Tools)
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

4. Brainhack results
4. extract the cerebellum (CBS Tools)
5. correct cerebellum inhomogeneities (N3)
6. re-segment the brain (CBS Tools)
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

5. Brainhack results
7. re-extract cerebellum and cerebrum (CBS Tools)
8. estimate cerebellar cortical surfaces (CRUISE)
9. estimate cerebral cortical surfaces (CRUISE)
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

6. Brainhack results
10. smooth the fMRI along the cortices (CBS Tools)
11. co-register surfaces with anatomical atlas (SyN)
12. group analysis in Matlab
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

7. Current setbacks
What anatomical standard to use?
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

8. Current setbacks
What anatomical standard to use?
SUIT has limited anatomical details between lobules
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

9. Current setbacks
What anatomical standard to use?
High-resolution 7T template instead?
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

10. II. part: to be provided...
●functional lobule masks within anatomical masks (provided by SUIT,
Diedrichsen Lab) for every individual and every lobule
●Probabilistic masks across individuals
●Thresholded group masks
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences

11. Summary
9/1/12 Max Planck Institute for Human Cognitive and Brain Sciences