SlideShare a Scribd company logo
1 of 13
Ilkka Lappalainen The European Genotype Archive - updated and upgraded
The European Genotype Archive (EGA) Data Accession Archive Services ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Focus on Development Data Exchange Phenotype Data Submission API ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
EGA model  dumped files website Secure FTP site genotype CNV sequence
Modularised Solution for Data Storage Individuals collated into collections Technology used for genotyping Genotypes and  associated values collection(s) case/control platform(s) analysis ega-individual ega-sample ega-platform ega-genotypes ega-study Samples taken from individuals audit QC
EGA model  dumped files website Secure FTP site genotype CNV sequence
 
 
 
 
 
EGA statistics ,[object Object],[object Object],[object Object],[object Object],[object Object]
EGA development team ,[object Object],[object Object],[object Object]

More Related Content

Viewers also liked

Atish_Gaikwad_Dot_Net_9_4_Years_Exp
Atish_Gaikwad_Dot_Net_9_4_Years_ExpAtish_Gaikwad_Dot_Net_9_4_Years_Exp
Atish_Gaikwad_Dot_Net_9_4_Years_ExpAtish Gaikwad
 
E Resume Rob Mclean
E Resume   Rob McleanE Resume   Rob Mclean
E Resume Rob Mcleanrobmclean
 
Dcms Twitter Intro
Dcms Twitter IntroDcms Twitter Intro
Dcms Twitter IntroNewscounter
 
[Challenge:Future] Let us Commit !
[Challenge:Future] Let us Commit ![Challenge:Future] Let us Commit !
[Challenge:Future] Let us Commit !Challenge:Future
 
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理悠識學院
 
จิตติพันธ์ วะราโพธิ์ ม.4
จิตติพันธ์ วะราโพธิ์ ม.4จิตติพันธ์ วะราโพธิ์ ม.4
จิตติพันธ์ วะราโพธิ์ ม.4artty2541
 
SURAT KELULUSAN OPKIM 10 PENJURU (JPPEL)
SURAT KELULUSAN OPKIM 10 PENJURU  (JPPEL)SURAT KELULUSAN OPKIM 10 PENJURU  (JPPEL)
SURAT KELULUSAN OPKIM 10 PENJURU (JPPEL)halwaizzati
 
[Challenge:Future] Tounj: Perfect Education for Dream Job
[Challenge:Future] Tounj: Perfect Education for Dream Job[Challenge:Future] Tounj: Perfect Education for Dream Job
[Challenge:Future] Tounj: Perfect Education for Dream JobChallenge:Future
 

Viewers also liked (10)

Atish_Gaikwad_Dot_Net_9_4_Years_Exp
Atish_Gaikwad_Dot_Net_9_4_Years_ExpAtish_Gaikwad_Dot_Net_9_4_Years_Exp
Atish_Gaikwad_Dot_Net_9_4_Years_Exp
 
E Resume Rob Mclean
E Resume   Rob McleanE Resume   Rob Mclean
E Resume Rob Mclean
 
Dcms Twitter Intro
Dcms Twitter IntroDcms Twitter Intro
Dcms Twitter Intro
 
[Challenge:Future] Let us Commit !
[Challenge:Future] Let us Commit ![Challenge:Future] Let us Commit !
[Challenge:Future] Let us Commit !
 
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
 
จิตติพันธ์ วะราโพธิ์ ม.4
จิตติพันธ์ วะราโพธิ์ ม.4จิตติพันธ์ วะราโพธิ์ ม.4
จิตติพันธ์ วะราโพธิ์ ม.4
 
SURAT KELULUSAN OPKIM 10 PENJURU (JPPEL)
SURAT KELULUSAN OPKIM 10 PENJURU  (JPPEL)SURAT KELULUSAN OPKIM 10 PENJURU  (JPPEL)
SURAT KELULUSAN OPKIM 10 PENJURU (JPPEL)
 
Los animales
Los animalesLos animales
Los animales
 
Log
LogLog
Log
 
[Challenge:Future] Tounj: Perfect Education for Dream Job
[Challenge:Future] Tounj: Perfect Education for Dream Job[Challenge:Future] Tounj: Perfect Education for Dream Job
[Challenge:Future] Tounj: Perfect Education for Dream Job
 

Similar to EGA Updated and Upgraded for Genotype Data Access

Variation and the VEP: Ensembl Online Webinar series
Variation and the VEP: Ensembl Online Webinar seriesVariation and the VEP: Ensembl Online Webinar series
Variation and the VEP: Ensembl Online Webinar seriesDenise Carvalho-Silva, PhD
 
FAIR data and model management for systems biology.
FAIR data and model management for systems biology.FAIR data and model management for systems biology.
FAIR data and model management for systems biology.FAIRDOM
 
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...Felipe Albrecht
 
Rare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
Rare Variant Analysis Workflows: Analyzing NGS Data in Large CohortsRare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
Rare Variant Analysis Workflows: Analyzing NGS Data in Large CohortsGolden Helix Inc
 
Using VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsUsing VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsDelaina Hawkins
 
Using VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsUsing VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsGolden Helix Inc
 
Genome resources at EMBL-EBI: Ensembl and Ensembl Genomes
Genome resources at EMBL-EBI: Ensembl and Ensembl GenomesGenome resources at EMBL-EBI: Ensembl and Ensembl Genomes
Genome resources at EMBL-EBI: Ensembl and Ensembl GenomesEBI
 
TGAC Browser bosc 2014
TGAC Browser bosc 2014TGAC Browser bosc 2014
TGAC Browser bosc 2014Anil Thanki
 

Similar to EGA Updated and Upgraded for Genotype Data Access (11)

Ensembl genome
Ensembl genomeEnsembl genome
Ensembl genome
 
Understanding Genome
Understanding Genome Understanding Genome
Understanding Genome
 
Variation and the VEP: Ensembl Online Webinar series
Variation and the VEP: Ensembl Online Webinar seriesVariation and the VEP: Ensembl Online Webinar series
Variation and the VEP: Ensembl Online Webinar series
 
FAIR data and model management for systems biology.
FAIR data and model management for systems biology.FAIR data and model management for systems biology.
FAIR data and model management for systems biology.
 
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
 
Parkinson mibbi
Parkinson mibbiParkinson mibbi
Parkinson mibbi
 
Rare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
Rare Variant Analysis Workflows: Analyzing NGS Data in Large CohortsRare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
Rare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
 
Using VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsUsing VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research Workflows
 
Using VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsUsing VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research Workflows
 
Genome resources at EMBL-EBI: Ensembl and Ensembl Genomes
Genome resources at EMBL-EBI: Ensembl and Ensembl GenomesGenome resources at EMBL-EBI: Ensembl and Ensembl Genomes
Genome resources at EMBL-EBI: Ensembl and Ensembl Genomes
 
TGAC Browser bosc 2014
TGAC Browser bosc 2014TGAC Browser bosc 2014
TGAC Browser bosc 2014
 

Recently uploaded

Artificial intelligence in the post-deep learning era
Artificial intelligence in the post-deep learning eraArtificial intelligence in the post-deep learning era
Artificial intelligence in the post-deep learning eraDeakin University
 
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024BookNet Canada
 
Benefits Of Flutter Compared To Other Frameworks
Benefits Of Flutter Compared To Other FrameworksBenefits Of Flutter Compared To Other Frameworks
Benefits Of Flutter Compared To Other FrameworksSoftradix Technologies
 
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...HostedbyConfluent
 
Integration and Automation in Practice: CI/CD in Mule Integration and Automat...
Integration and Automation in Practice: CI/CD in Mule Integration and Automat...Integration and Automation in Practice: CI/CD in Mule Integration and Automat...
Integration and Automation in Practice: CI/CD in Mule Integration and Automat...Patryk Bandurski
 
Hyderabad Call Girls Khairatabad ✨ 7001305949 ✨ Cheap Price Your Budget
Hyderabad Call Girls Khairatabad ✨ 7001305949 ✨ Cheap Price Your BudgetHyderabad Call Girls Khairatabad ✨ 7001305949 ✨ Cheap Price Your Budget
Hyderabad Call Girls Khairatabad ✨ 7001305949 ✨ Cheap Price Your BudgetEnjoy Anytime
 
Snow Chain-Integrated Tire for a Safe Drive on Winter Roads
Snow Chain-Integrated Tire for a Safe Drive on Winter RoadsSnow Chain-Integrated Tire for a Safe Drive on Winter Roads
Snow Chain-Integrated Tire for a Safe Drive on Winter RoadsHyundai Motor Group
 
Breaking the Kubernetes Kill Chain: Host Path Mount
Breaking the Kubernetes Kill Chain: Host Path MountBreaking the Kubernetes Kill Chain: Host Path Mount
Breaking the Kubernetes Kill Chain: Host Path MountPuma Security, LLC
 
Pigging Solutions in Pet Food Manufacturing
Pigging Solutions in Pet Food ManufacturingPigging Solutions in Pet Food Manufacturing
Pigging Solutions in Pet Food ManufacturingPigging Solutions
 
Install Stable Diffusion in windows machine
Install Stable Diffusion in windows machineInstall Stable Diffusion in windows machine
Install Stable Diffusion in windows machinePadma Pradeep
 
08448380779 Call Girls In Friends Colony Women Seeking Men
08448380779 Call Girls In Friends Colony Women Seeking Men08448380779 Call Girls In Friends Colony Women Seeking Men
08448380779 Call Girls In Friends Colony Women Seeking MenDelhi Call girls
 
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...shyamraj55
 
Unblocking The Main Thread Solving ANRs and Frozen Frames
Unblocking The Main Thread Solving ANRs and Frozen FramesUnblocking The Main Thread Solving ANRs and Frozen Frames
Unblocking The Main Thread Solving ANRs and Frozen FramesSinan KOZAK
 
CloudStudio User manual (basic edition):
CloudStudio User manual (basic edition):CloudStudio User manual (basic edition):
CloudStudio User manual (basic edition):comworks
 
Understanding the Laravel MVC Architecture
Understanding the Laravel MVC ArchitectureUnderstanding the Laravel MVC Architecture
Understanding the Laravel MVC ArchitecturePixlogix Infotech
 
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | DelhiFULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhisoniya singh
 
WhatsApp 9892124323 ✓Call Girls In Kalyan ( Mumbai ) secure service
WhatsApp 9892124323 ✓Call Girls In Kalyan ( Mumbai ) secure serviceWhatsApp 9892124323 ✓Call Girls In Kalyan ( Mumbai ) secure service
WhatsApp 9892124323 ✓Call Girls In Kalyan ( Mumbai ) secure servicePooja Nehwal
 
Next-generation AAM aircraft unveiled by Supernal, S-A2
Next-generation AAM aircraft unveiled by Supernal, S-A2Next-generation AAM aircraft unveiled by Supernal, S-A2
Next-generation AAM aircraft unveiled by Supernal, S-A2Hyundai Motor Group
 
Key Features Of Token Development (1).pptx
Key  Features Of Token  Development (1).pptxKey  Features Of Token  Development (1).pptx
Key Features Of Token Development (1).pptxLBM Solutions
 

Recently uploaded (20)

Artificial intelligence in the post-deep learning era
Artificial intelligence in the post-deep learning eraArtificial intelligence in the post-deep learning era
Artificial intelligence in the post-deep learning era
 
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
 
Benefits Of Flutter Compared To Other Frameworks
Benefits Of Flutter Compared To Other FrameworksBenefits Of Flutter Compared To Other Frameworks
Benefits Of Flutter Compared To Other Frameworks
 
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
 
Integration and Automation in Practice: CI/CD in Mule Integration and Automat...
Integration and Automation in Practice: CI/CD in Mule Integration and Automat...Integration and Automation in Practice: CI/CD in Mule Integration and Automat...
Integration and Automation in Practice: CI/CD in Mule Integration and Automat...
 
Hyderabad Call Girls Khairatabad ✨ 7001305949 ✨ Cheap Price Your Budget
Hyderabad Call Girls Khairatabad ✨ 7001305949 ✨ Cheap Price Your BudgetHyderabad Call Girls Khairatabad ✨ 7001305949 ✨ Cheap Price Your Budget
Hyderabad Call Girls Khairatabad ✨ 7001305949 ✨ Cheap Price Your Budget
 
Snow Chain-Integrated Tire for a Safe Drive on Winter Roads
Snow Chain-Integrated Tire for a Safe Drive on Winter RoadsSnow Chain-Integrated Tire for a Safe Drive on Winter Roads
Snow Chain-Integrated Tire for a Safe Drive on Winter Roads
 
Breaking the Kubernetes Kill Chain: Host Path Mount
Breaking the Kubernetes Kill Chain: Host Path MountBreaking the Kubernetes Kill Chain: Host Path Mount
Breaking the Kubernetes Kill Chain: Host Path Mount
 
Pigging Solutions in Pet Food Manufacturing
Pigging Solutions in Pet Food ManufacturingPigging Solutions in Pet Food Manufacturing
Pigging Solutions in Pet Food Manufacturing
 
Install Stable Diffusion in windows machine
Install Stable Diffusion in windows machineInstall Stable Diffusion in windows machine
Install Stable Diffusion in windows machine
 
Vulnerability_Management_GRC_by Sohang Sengupta.pptx
Vulnerability_Management_GRC_by Sohang Sengupta.pptxVulnerability_Management_GRC_by Sohang Sengupta.pptx
Vulnerability_Management_GRC_by Sohang Sengupta.pptx
 
08448380779 Call Girls In Friends Colony Women Seeking Men
08448380779 Call Girls In Friends Colony Women Seeking Men08448380779 Call Girls In Friends Colony Women Seeking Men
08448380779 Call Girls In Friends Colony Women Seeking Men
 
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
 
Unblocking The Main Thread Solving ANRs and Frozen Frames
Unblocking The Main Thread Solving ANRs and Frozen FramesUnblocking The Main Thread Solving ANRs and Frozen Frames
Unblocking The Main Thread Solving ANRs and Frozen Frames
 
CloudStudio User manual (basic edition):
CloudStudio User manual (basic edition):CloudStudio User manual (basic edition):
CloudStudio User manual (basic edition):
 
Understanding the Laravel MVC Architecture
Understanding the Laravel MVC ArchitectureUnderstanding the Laravel MVC Architecture
Understanding the Laravel MVC Architecture
 
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | DelhiFULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
 
WhatsApp 9892124323 ✓Call Girls In Kalyan ( Mumbai ) secure service
WhatsApp 9892124323 ✓Call Girls In Kalyan ( Mumbai ) secure serviceWhatsApp 9892124323 ✓Call Girls In Kalyan ( Mumbai ) secure service
WhatsApp 9892124323 ✓Call Girls In Kalyan ( Mumbai ) secure service
 
Next-generation AAM aircraft unveiled by Supernal, S-A2
Next-generation AAM aircraft unveiled by Supernal, S-A2Next-generation AAM aircraft unveiled by Supernal, S-A2
Next-generation AAM aircraft unveiled by Supernal, S-A2
 
Key Features Of Token Development (1).pptx
Key  Features Of Token  Development (1).pptxKey  Features Of Token  Development (1).pptx
Key Features Of Token Development (1).pptx
 

EGA Updated and Upgraded for Genotype Data Access

  • 1. Ilkka Lappalainen The European Genotype Archive - updated and upgraded
  • 2.
  • 3.
  • 4. EGA model dumped files website Secure FTP site genotype CNV sequence
  • 5. Modularised Solution for Data Storage Individuals collated into collections Technology used for genotyping Genotypes and associated values collection(s) case/control platform(s) analysis ega-individual ega-sample ega-platform ega-genotypes ega-study Samples taken from individuals audit QC
  • 6. EGA model dumped files website Secure FTP site genotype CNV sequence
  • 7.  
  • 8.  
  • 9.  
  • 10.  
  • 11.  
  • 12.
  • 13.