SlideShare a Scribd company logo
1 of 7
De novo assembly and
characterization of Ichthyophonus
             genome
Filter Reads, conservative
Two Assemblies
                               mean
       # of                    contig
       contigs   Total bases   length   Stdev   N25    N50    N75      max
CLC    11186     83209529      7438     10886   1254   3061   8868    139146
SOAP   5674      83379800      14695    25856   968    3714   17748   349968
Fungi
     Metazoa

                          Ciona intestinalis


                                                       Monosiga brevicollis



Mesomycetozea
                               Saccharomyces
                               cerviseae



       Choanoflagellata
Fungi Blast
                                                                                              GoSlim2 annotation
              Choanoflagellate Blast
                 GoSlim2 annotation
                                                                                                                     catalytic
                                                                                                                      activity
                                     catalytic
                                      activity


                                                                                                                            transferase
                                            transferase                        cell                                           activity
                                              activity                                           hydrolase
       cell                                                                                                  metabolism
                   hydrolase                                                                      activity
                               metabolism
                    activity


                                                                         biosynthesis
biosynthesis

                                                          Metazoa Blast
                                                          GoSlim2 annotation


                                                                                  catalytic activity




                                                                                           transferase
                                                                                             activity
                                            cell
                                                             hydrolase     metabolism
                                                              activity




                                   biosynthesis
Presentation1
Presentation1

More Related Content

Viewers also liked

Global Co Telecom faux KPI Scorecard
Global Co Telecom faux KPI ScorecardGlobal Co Telecom faux KPI Scorecard
Global Co Telecom faux KPI ScorecardAdam Shiell
 
What is transparency?
What is transparency?What is transparency?
What is transparency?Jordan Husney
 
Programa Contacto Verde Ley 36-2015 de Puerto Rico
Programa Contacto Verde Ley 36-2015 de Puerto RicoPrograma Contacto Verde Ley 36-2015 de Puerto Rico
Programa Contacto Verde Ley 36-2015 de Puerto RicoAlba Mangual
 
Plan de Negocios - Cuadros
Plan de Negocios - CuadrosPlan de Negocios - Cuadros
Plan de Negocios - CuadrosMaricel Jorge
 
End to End Product Launch for Telecoms
End to End Product Launch for TelecomsEnd to End Product Launch for Telecoms
End to End Product Launch for TelecomsAdam Shiell
 
Peraturan pertandingan futsal
Peraturan pertandingan futsalPeraturan pertandingan futsal
Peraturan pertandingan futsalIrsyad Syahmi
 

Viewers also liked (11)

Barab design based research
Barab design based researchBarab design based research
Barab design based research
 
Global Co Telecom faux KPI Scorecard
Global Co Telecom faux KPI ScorecardGlobal Co Telecom faux KPI Scorecard
Global Co Telecom faux KPI Scorecard
 
Week 3 database design
Week 3   database designWeek 3   database design
Week 3 database design
 
Presentacion 2
Presentacion 2Presentacion 2
Presentacion 2
 
What is transparency?
What is transparency?What is transparency?
What is transparency?
 
Presentacion 2
Presentacion 2Presentacion 2
Presentacion 2
 
Programa Contacto Verde Ley 36-2015 de Puerto Rico
Programa Contacto Verde Ley 36-2015 de Puerto RicoPrograma Contacto Verde Ley 36-2015 de Puerto Rico
Programa Contacto Verde Ley 36-2015 de Puerto Rico
 
Plan de Negocios - Cuadros
Plan de Negocios - CuadrosPlan de Negocios - Cuadros
Plan de Negocios - Cuadros
 
Design based research
Design based researchDesign based research
Design based research
 
End to End Product Launch for Telecoms
End to End Product Launch for TelecomsEnd to End Product Launch for Telecoms
End to End Product Launch for Telecoms
 
Peraturan pertandingan futsal
Peraturan pertandingan futsalPeraturan pertandingan futsal
Peraturan pertandingan futsal
 

Presentation1

  • 1. De novo assembly and characterization of Ichthyophonus genome
  • 3. Two Assemblies mean # of contig contigs Total bases length Stdev N25 N50 N75 max CLC 11186 83209529 7438 10886 1254 3061 8868 139146 SOAP 5674 83379800 14695 25856 968 3714 17748 349968
  • 4. Fungi Metazoa Ciona intestinalis Monosiga brevicollis Mesomycetozea Saccharomyces cerviseae Choanoflagellata
  • 5. Fungi Blast GoSlim2 annotation Choanoflagellate Blast GoSlim2 annotation catalytic activity catalytic activity transferase transferase cell activity activity hydrolase cell metabolism hydrolase activity metabolism activity biosynthesis biosynthesis Metazoa Blast GoSlim2 annotation catalytic activity transferase activity cell hydrolase metabolism activity biosynthesis