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Knee Cartilage Segmentation
               Internship at Siemens Corporate Research


                                  Ugo Jardonnet

                      EPITA Research and Development Laboratory
                                                                   ´
                  Ecole Pour l’Informatique et les Techniques Avancees.

                        Department of Imaging and Visualization
                            Siemens Corporate Research


               End-of-Study Internship Presentation, 2009




Ugo Jardonnet (LRDE)             Knee Cartilage Segmentation         EOS Internship 2009   1 / 19
Outline


1   Introduction
       Siemens Corporate Research
       Organization

2   Internship Project
       Knee Cartilage Segmentation
       Segmentation

3   Technical Aspect
      Various tools and technology
      Tools



    Ugo Jardonnet (LRDE)   Knee Cartilage Segmentation   EOS Internship 2009   2 / 19
Introduction


Outline


1   Introduction
       Siemens Corporate Research
       Organization

2   Internship Project
       Knee Cartilage Segmentation
       Segmentation

3   Technical Aspect
      Various tools and technology
      Tools



    Ugo Jardonnet (LRDE)   Knee Cartilage Segmentation   EOS Internship 2009   3 / 19
Introduction   Siemens Corporate Research


Siemens



   Company founded in 1847.
   Revenue of 77.3 billion euros in fiscal 2008.
   Activity: Conception, development, manufacturing and marketing.
   Products: Automation, telecommunication, healthcare, power
   generation and home appliances.
   Roughly 430 000 employees over the world.
   About 300 at Siemens Corporate Research.




  Ugo Jardonnet (LRDE)   Knee Cartilage Segmentation                  EOS Internship 2009   4 / 19
Introduction   Siemens Corporate Research


From Siemens Corporate Technology to SCR




  Ugo Jardonnet (LRDE)   Knee Cartilage Segmentation                 EOS Internship 2009   5 / 19
Introduction   Organization


Organization




   Ugo Jardonnet (LRDE)   Knee Cartilage Segmentation   EOS Internship 2009   6 / 19
Internship Project


Outline


1   Introduction
       Siemens Corporate Research
       Organization

2   Internship Project
       Knee Cartilage Segmentation
       Segmentation

3   Technical Aspect
      Various tools and technology
      Tools



    Ugo Jardonnet (LRDE)        Knee Cartilage Segmentation   EOS Internship 2009   7 / 19
Internship Project   Knee Cartilage Segmentation


Knee Cartilage




   Ugo Jardonnet (LRDE)        Knee Cartilage Segmentation                   EOS Internship 2009   8 / 19
Internship Project   Segmentation


Boosting




  Ugo Jardonnet (LRDE)        Knee Cartilage Segmentation    EOS Internship 2009   9 / 19
Internship Project   Segmentation


Implementation

Boosting algorithm
    Adaboost and variant.

Weak Classifier
   k -Nearest Neighbors
    Stump
    Linear
    Perceptron
    Classifier tree
           Gini Index
           Misclassification
           Square error


   Ugo Jardonnet (LRDE)            Knee Cartilage Segmentation    EOS Internship 2009   10 / 19
Internship Project   Segmentation


Classification Tree




   Ugo Jardonnet (LRDE)        Knee Cartilage Segmentation    EOS Internship 2009   11 / 19
Internship Project   Segmentation


Practical Proficiency for SCR




Boosting
    overfits very slowly.
    allows feature Selection.
    can converge very quickly.




   Ugo Jardonnet (LRDE)         Knee Cartilage Segmentation    EOS Internship 2009   12 / 19
Technical Aspect


Outline


1   Introduction
       Siemens Corporate Research
       Organization

2   Internship Project
       Knee Cartilage Segmentation
       Segmentation

3   Technical Aspect
      Various tools and technology
      Tools



    Ugo Jardonnet (LRDE)       Knee Cartilage Segmentation   EOS Internship 2009   13 / 19
Technical Aspect   Various tools and technology


CoreLib




   CoreLib test




  Ugo Jardonnet (LRDE)       Knee Cartilage Segmentation                   EOS Internship 2009   14 / 19
Technical Aspect   Tools


Tools




    SVN
    Python
    Matlab




   Ugo Jardonnet (LRDE)       Knee Cartilage Segmentation   EOS Internship 2009   15 / 19
Technical Aspect   Tools


Make Titles Informative.




   Ugo Jardonnet (LRDE)       Knee Cartilage Segmentation   EOS Internship 2009   16 / 19
Summary


Timeline


Gantt Chart
                                                            Mar Apr May Jun         Jul
                  Kickoff-Meeting / First meeting with Li

         Implementation of weak classifiers / Validation

                      Boosting Algorithms / Validation

                                            Haar Filters

                      Organs classification / Validation

           Feature extraction (wavelet, hessian, tensor)

                                             Corelib test

                                                Bmp2txt




   Ugo Jardonnet (LRDE)                      Knee Cartilage Segmentation   EOS Internship 2009   17 / 19
Summary


Conclusion



   The first main message of your talk in one or two lines.
   The second main message of your talk in one or two lines.
   Perhaps a third message, but not more than that.


   Outlook
          Something you haven’t solved.
          Something else you haven’t solved.




  Ugo Jardonnet (LRDE)       Knee Cartilage Segmentation   EOS Internship 2009   18 / 19
Appendix    For Further Reading


For Further Reading I




   A. Author.
   Handbook of Everything.
   Some Press, 1990.
   S. Someone.
   On this and that.
   Journal of This and That, 2(1):50–100, 2000.




   Ugo Jardonnet (LRDE)   Knee Cartilage Segmentation          EOS Internship 2009   19 / 19

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Slide

  • 1. Knee Cartilage Segmentation Internship at Siemens Corporate Research Ugo Jardonnet EPITA Research and Development Laboratory ´ Ecole Pour l’Informatique et les Techniques Avancees. Department of Imaging and Visualization Siemens Corporate Research End-of-Study Internship Presentation, 2009 Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 1 / 19
  • 2. Outline 1 Introduction Siemens Corporate Research Organization 2 Internship Project Knee Cartilage Segmentation Segmentation 3 Technical Aspect Various tools and technology Tools Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 2 / 19
  • 3. Introduction Outline 1 Introduction Siemens Corporate Research Organization 2 Internship Project Knee Cartilage Segmentation Segmentation 3 Technical Aspect Various tools and technology Tools Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 3 / 19
  • 4. Introduction Siemens Corporate Research Siemens Company founded in 1847. Revenue of 77.3 billion euros in fiscal 2008. Activity: Conception, development, manufacturing and marketing. Products: Automation, telecommunication, healthcare, power generation and home appliances. Roughly 430 000 employees over the world. About 300 at Siemens Corporate Research. Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 4 / 19
  • 5. Introduction Siemens Corporate Research From Siemens Corporate Technology to SCR Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 5 / 19
  • 6. Introduction Organization Organization Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 6 / 19
  • 7. Internship Project Outline 1 Introduction Siemens Corporate Research Organization 2 Internship Project Knee Cartilage Segmentation Segmentation 3 Technical Aspect Various tools and technology Tools Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 7 / 19
  • 8. Internship Project Knee Cartilage Segmentation Knee Cartilage Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 8 / 19
  • 9. Internship Project Segmentation Boosting Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 9 / 19
  • 10. Internship Project Segmentation Implementation Boosting algorithm Adaboost and variant. Weak Classifier k -Nearest Neighbors Stump Linear Perceptron Classifier tree Gini Index Misclassification Square error Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 10 / 19
  • 11. Internship Project Segmentation Classification Tree Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 11 / 19
  • 12. Internship Project Segmentation Practical Proficiency for SCR Boosting overfits very slowly. allows feature Selection. can converge very quickly. Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 12 / 19
  • 13. Technical Aspect Outline 1 Introduction Siemens Corporate Research Organization 2 Internship Project Knee Cartilage Segmentation Segmentation 3 Technical Aspect Various tools and technology Tools Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 13 / 19
  • 14. Technical Aspect Various tools and technology CoreLib CoreLib test Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 14 / 19
  • 15. Technical Aspect Tools Tools SVN Python Matlab Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 15 / 19
  • 16. Technical Aspect Tools Make Titles Informative. Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 16 / 19
  • 17. Summary Timeline Gantt Chart Mar Apr May Jun Jul Kickoff-Meeting / First meeting with Li Implementation of weak classifiers / Validation Boosting Algorithms / Validation Haar Filters Organs classification / Validation Feature extraction (wavelet, hessian, tensor) Corelib test Bmp2txt Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 17 / 19
  • 18. Summary Conclusion The first main message of your talk in one or two lines. The second main message of your talk in one or two lines. Perhaps a third message, but not more than that. Outlook Something you haven’t solved. Something else you haven’t solved. Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 18 / 19
  • 19. Appendix For Further Reading For Further Reading I A. Author. Handbook of Everything. Some Press, 1990. S. Someone. On this and that. Journal of This and That, 2(1):50–100, 2000. Ugo Jardonnet (LRDE) Knee Cartilage Segmentation EOS Internship 2009 19 / 19