This is the talk I gave at the 4th annual Sequencing, Finishing, Analysis in the Future meeting. I tried to record my talk onto the slides based on the recording from the meeting, but it didn't work well. You can view the talk here: http://www.scivee.tv/node/11410 to hook the words up to the slides.
14. Genome Browser Agreement Submitter deposits assembly to GenBank/EMBL/DDBJ Assembly QA Submitter updates assembly based on QA results Browsers pick up assembly from GenBank/EMBL/DDBJ
19. How do we decide when to upgrade? Phenotypes: Developmental Delay Head circumference Autism Schizophrenia 1q21 Brunetti-Pierri et al., 2008
20. Any easier way to find the differences HG-21 Description: ESP analysis suggests the reference chromosome contains an inversion within AL139246.20. Resolution: AL139246.20 was updated to AL139246.21 on 20 January, 2007. issue reported in this ticket (an inversion)
22. Any easier way to find the differences HG-2 Build 36, chr 4 (NC_000004.10) GAP GRCh37, chr4 (CM000666.1) GRCh37, alt locus 8 (GL000257.1) Xue Y et al, 2008
24. Any easier way to find the differences- better alignments
25. Thanks… NCBI Genome Pipeline staff Avi Kimchi Paul Kitts Mike DiCuccio Nathan Bouk Josh Cherry Cliff Clausen Wratko Hlavina Valerie Schneider Genome Reference Consortium The Genome Center at Washington University The Wellcome Trust Sanger Institute The European Bioinformatics Institute The National Center for Biotechnology Information
26. URLs mentioned in talk AGP Specification and Validation http://www.ncbi.nlm.nih.gov/genome/assembly/agp/ Genome Workbench http://www.ncbi.nlm.nih.gov/projects/gbench Sequence Viewer http://www.ncbi.nlm.nih.gov/projects/sviewer Genome Reference Consortium http://genomereference.org How Unique is your name? http://howmanyofme.com