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unuhi           AimxjsunuhisaushnvnviuasnksiqxcvmU




        Fighting Malaria
                with

          DNA    Barcoding

                                           Aimxjsun
  6
UYvjkmin678bnbhbzOk,as,oisaccc                                                                                                                            HTAimx
       » Each year, malaria infects at least 500 million people, killing      most often). Among the items currently under discussion is a
       between one and three million, the vast majority of whom are           proposal to add multigene capabilities to barcoders. This would
       children under the age of five. Intervention has been hampered         add flexibility to the technique and make it possible to also study
       by the existence of about 3,500 species of mosquitoes that             vegetation. This places major ecological issues, such as the
       spread the disease and respond differently to intervention. By         management of biodiversity, on the barcoding radar. In short, an
       spearheading a technique for identifying species, CSHL’s Banbury       entirely new field of scientific inquiry has taken shape. “As a
       Center has played a unique role in efforts to eradicate the            consequence of these meetings,” Witkowski reflects, “a whole
       disease. The technique, called DNA barcoding, is a triumph             ‘industry’ of barcoding has developed and is being used widely
       for “big picture” science — the hallmark of Cold Spring Harbor         throughout the world.”
       Laboratory’s Banbury Center for 30 years.                                 The success of the DNA barcoding meeting owes much to the
          DNA barcoding was developed by Paul Herbert at the University       approach of the “Banbury Style.” Witkowski organizes up to 24
       of Guelph in 2003 as a research tool for the field of taxonomy         meetings each year, which span the gamut of molecular, neural
       (the science of naming organisms). The technique centers on a          and biomedical research. Although topics vary widely, the meet-
       gene called cytochrome c oxidase I (COI). COI is the perfect gene      ings share one purpose — the advancement of breakthrough
       for differentiating organisms — it’s found in every member of the      science. Banbury Center meetings are intended to forge new
       animal kingdom, it’s short and therefore manageable, and it’s          ground in intellectual inquiry by critically assessing the often-
       located in mitochondria, making it easily accessible to researchers.   controversial state of play in the field under review. Witkowski
       What makes it especially useful, however, is that COI is unique        has the unenviable responsibility of making this happen. Toward
       in every species on the planet. Even though all creatures share        this end, he outlines a few simple rules. “The first,” he says,
       a copy of the COI gene, that copy is different in each species.        “is the size of the group. It’s small enough that everybody has
          The Alfred P. Sloan Foundation, known for promoting new             to contribute. You’re conspicuous if you don’t speak up and
       areas of biological research, decided that barcoding was an            take part. But it’s also a sufficiently large number to ensure an
       important initiative that justified further development. Jesse         interesting mix of experts.”
       Ausubel, the Sloan Foundation program officer who took on the             Because of Banbury’s role in leading science innovation, the
       project, contacted Witkowski about a workshop to explore the           focus is on policy implementation. The limited number of par-
       promises (and pitfalls) of DNA barcoding. That discussion proved       ticipants — between 24 and 36 — is large enough to ensure a
       fruitful. On March 9, 2003, the Banbury Center partnered with          good range of opinion, but not so large that opinions get lost in
       the Sloan Foundation and brought together a distinguished              the cacophony.
       group of researchers from Europe and North America to explore             For this concept to work, however, it is important to have the
       Taxonomy and DNA.                                                      right mix of scientists, and diversity is critical. “With every
          The group devised many potential applications for DNA bar-          meeting I do, somebody calls to ask why they’ve been invited.
       coding, of which the Mosquito Barcoding Initiative (MBI) is the        They see the title of the meeting; they even see a description of
       example with the highest profile. The MBI was subsequently             what the meeting is about, and they still can’t understand why
       adopted by London’s Natural History Museum and has already             they’ve been invited. And that, I think, is a rather good thing to
       had a substantial impact on malarial research. Three hundred           happen.” explains Witkowski.
       ninety mosquito species have been barcoded, and 27 new                    Cognitive diversity, which refers to different styles of thinking,
       species have been identified. Not all mosquitoes carry malaria,        is decisive in engendering the mix of ideas from which ingenuity
       and some are considerably more virulent than others, but the           prospers. Every Banbury meeting brings together opinion leaders
       use of DNA barcoding has made it easier to identify and target         from diverse fields to innovate. Attendees at the “Taxonomy and
       the most lethal species.                                               DNA” meeting in 2003 had backgrounds in bioinformatics, ecol-
          A case in point is Anopheles oswaldoi, which was known to           ogy, evolution, genetics, microbiology, molecular biology, neuro-
       carry malaria in northern Brazil but for unknown reasons was           biology, oceanography, taxonomy, telecommunications and zoology.
       benign in the southern regions of the country. By using DNA               This harks back to the founding of the Banbury Center, which
       barcoding, researchers were able to establish that the A. oswaldoi     was introduced as a conference center in 1977. The center was
       was not one but four different species — only one of which carries     donated to CSHL by Charles Robertson, a philanthropist from
       malaria. By controlling the spread of that carrier, researchers        Lloyd Harbor, N.Y. Through the Banbury Center Robertson hoped
       can effectively control the spread of the disease.                     “to win the big prize.” There are few prizes bigger than the erad-
          During the next two years, the MBI aims to barcode 80 percent       ication of malaria, and this recipe for “big picture” science has
       of the world’s mosquitoes, which may be carriers of lethal diseases    made Banbury a focal point of scientific communication. On June
       such as West Nile virus and dengue fever, in addition to malaria.      14, 1977, when Nobel laureate Francis Crick gave the dedicatory
          DNA barcoding is also being piloted in fields as varied as          address there, he spoke of the free exchange of opinions and infor-
       customs control (to target the illegal transportation of wildlife)     mation, and of the importance of communication to fostering new
       and aviation administration (to identify which birds strike planes     ideas. This has been the “Banbury Style” ever since. John Connolly




nuhi
                                                                                                                                             Winter/Spring 2008

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Dnabarcode

  • 1. unuhi AimxjsunuhisaushnvnviuasnksiqxcvmU Fighting Malaria with DNA Barcoding Aimxjsun 6
  • 2. UYvjkmin678bnbhbzOk,as,oisaccc HTAimx » Each year, malaria infects at least 500 million people, killing most often). Among the items currently under discussion is a between one and three million, the vast majority of whom are proposal to add multigene capabilities to barcoders. This would children under the age of five. Intervention has been hampered add flexibility to the technique and make it possible to also study by the existence of about 3,500 species of mosquitoes that vegetation. This places major ecological issues, such as the spread the disease and respond differently to intervention. By management of biodiversity, on the barcoding radar. In short, an spearheading a technique for identifying species, CSHL’s Banbury entirely new field of scientific inquiry has taken shape. “As a Center has played a unique role in efforts to eradicate the consequence of these meetings,” Witkowski reflects, “a whole disease. The technique, called DNA barcoding, is a triumph ‘industry’ of barcoding has developed and is being used widely for “big picture” science — the hallmark of Cold Spring Harbor throughout the world.” Laboratory’s Banbury Center for 30 years. The success of the DNA barcoding meeting owes much to the DNA barcoding was developed by Paul Herbert at the University approach of the “Banbury Style.” Witkowski organizes up to 24 of Guelph in 2003 as a research tool for the field of taxonomy meetings each year, which span the gamut of molecular, neural (the science of naming organisms). The technique centers on a and biomedical research. Although topics vary widely, the meet- gene called cytochrome c oxidase I (COI). COI is the perfect gene ings share one purpose — the advancement of breakthrough for differentiating organisms — it’s found in every member of the science. Banbury Center meetings are intended to forge new animal kingdom, it’s short and therefore manageable, and it’s ground in intellectual inquiry by critically assessing the often- located in mitochondria, making it easily accessible to researchers. controversial state of play in the field under review. Witkowski What makes it especially useful, however, is that COI is unique has the unenviable responsibility of making this happen. Toward in every species on the planet. Even though all creatures share this end, he outlines a few simple rules. “The first,” he says, a copy of the COI gene, that copy is different in each species. “is the size of the group. It’s small enough that everybody has The Alfred P. Sloan Foundation, known for promoting new to contribute. You’re conspicuous if you don’t speak up and areas of biological research, decided that barcoding was an take part. But it’s also a sufficiently large number to ensure an important initiative that justified further development. Jesse interesting mix of experts.” Ausubel, the Sloan Foundation program officer who took on the Because of Banbury’s role in leading science innovation, the project, contacted Witkowski about a workshop to explore the focus is on policy implementation. The limited number of par- promises (and pitfalls) of DNA barcoding. That discussion proved ticipants — between 24 and 36 — is large enough to ensure a fruitful. On March 9, 2003, the Banbury Center partnered with good range of opinion, but not so large that opinions get lost in the Sloan Foundation and brought together a distinguished the cacophony. group of researchers from Europe and North America to explore For this concept to work, however, it is important to have the Taxonomy and DNA. right mix of scientists, and diversity is critical. “With every The group devised many potential applications for DNA bar- meeting I do, somebody calls to ask why they’ve been invited. coding, of which the Mosquito Barcoding Initiative (MBI) is the They see the title of the meeting; they even see a description of example with the highest profile. The MBI was subsequently what the meeting is about, and they still can’t understand why adopted by London’s Natural History Museum and has already they’ve been invited. And that, I think, is a rather good thing to had a substantial impact on malarial research. Three hundred happen.” explains Witkowski. ninety mosquito species have been barcoded, and 27 new Cognitive diversity, which refers to different styles of thinking, species have been identified. Not all mosquitoes carry malaria, is decisive in engendering the mix of ideas from which ingenuity and some are considerably more virulent than others, but the prospers. Every Banbury meeting brings together opinion leaders use of DNA barcoding has made it easier to identify and target from diverse fields to innovate. Attendees at the “Taxonomy and the most lethal species. DNA” meeting in 2003 had backgrounds in bioinformatics, ecol- A case in point is Anopheles oswaldoi, which was known to ogy, evolution, genetics, microbiology, molecular biology, neuro- carry malaria in northern Brazil but for unknown reasons was biology, oceanography, taxonomy, telecommunications and zoology. benign in the southern regions of the country. By using DNA This harks back to the founding of the Banbury Center, which barcoding, researchers were able to establish that the A. oswaldoi was introduced as a conference center in 1977. The center was was not one but four different species — only one of which carries donated to CSHL by Charles Robertson, a philanthropist from malaria. By controlling the spread of that carrier, researchers Lloyd Harbor, N.Y. Through the Banbury Center Robertson hoped can effectively control the spread of the disease. “to win the big prize.” There are few prizes bigger than the erad- During the next two years, the MBI aims to barcode 80 percent ication of malaria, and this recipe for “big picture” science has of the world’s mosquitoes, which may be carriers of lethal diseases made Banbury a focal point of scientific communication. On June such as West Nile virus and dengue fever, in addition to malaria. 14, 1977, when Nobel laureate Francis Crick gave the dedicatory DNA barcoding is also being piloted in fields as varied as address there, he spoke of the free exchange of opinions and infor- customs control (to target the illegal transportation of wildlife) mation, and of the importance of communication to fostering new and aviation administration (to identify which birds strike planes ideas. This has been the “Banbury Style” ever since. John Connolly nuhi Winter/Spring 2008