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 Roux 1885: Embryonic chick cells were maintained in saline
 Harrison 1907: Amphibian spinal cord cultivated in lymph produced axons in vitro
 Carrel 1913: Cells in a culture can grow continuously under aseptic conditions
 Earle 1943: First continuous cell line from L-cell mouse fibroblast.
 Gey et.al. , 1952 : Established continuous cell lines derived from human cervical
carcinoma – He La cells
 Levi Montaleini 1954: NGF stimulated the neuron growth.
 Eagle 1955: Developed by a systematic study a Basal medium of the nutrients and the
serum for cell culture
 Puck et.al.,1956 Selected mutants with altered nutrient requirement
 Temin and Rubin 1958: Developed quantitative assay for infection of Rous sarcoma virus
in cell culture
 Hayflick and Moorehead 1961: Human fibroblasts in culture have finite life time
 Littlefield 1964: Introduced HAT medium for for selective growth of somatic cells
 Ham 1965: Introduced a defined serum free medium to support the clonal growth of
certain mammalian cells
 Harris and Watkins 1965: produced first heterokaryon by virus indused fusion
 Augusti Tocco and Sato 1968: Neuroblastoma cultures
 Koehler and Milstein 1975: Monoclonal antibody secreting hybridoma cell line
 Sato et.al. 1976: Published the first series of papers defining the mixtures of
hormones and growth factors for different cell lines in serum free media
 Wigler and Axel 1977: (Adopting method of Graham and Vander Eb): Single copy
mammalian gene in culture cells)
What is Tissue/Cell Culture?
Refers to the removal of cells or tissues or organs from an animal or plant and
their subsequent placement in a favorable artificial environment conducive to
growth
Environment usually consists of a suitable glass or plastic culture vessel containing
a liquid or semisolid medium that supplies the nutrients essential for survival
and growth.
Primary Culture
Primary culture refers to the stage of the culture after the cells are isolated from the
tissue and proliferated under the appropriate conditions until they occupy all of the
available substrate (i.e., reach confluence).
Explant culture
Enzymatic dissociation
Cell Line
After the first subculture, the primary culture becomes known as a cell line or
subclone. Cell lines derived from primary cultures have a limited life span (i.e., they
are finite) and as they are passaged, cells with the highest growth capacity
predominate, resulting in a degree of genotypic and phenotypic uniformity in the
population.
Cell Strain
If a subpopulation of a cell line is positively selected from the culture by cloning or
some other method, this cell line becomes a cell strain
Buying and Borrowing
Buy established cultures from organizations such as ATCC or Coriell institute of
Medical Research or RIKEN cell bank or National Centre for Cellular Sciences
(NCCS)
Cell lines can be
propagated as two types of
cultures
Suspension culture.
Anchorage independent
Cell cultures from
haematopoetic cells.
Ex: Leukamia cells,
Multiple melanoma cells.
Cell cutures from organ or
tissues.
Ex: Epithelial cells,
Fibroblasts.
Monolayer culture.
Anchorage dependent
Types of Cells
Cultured cells are usually described based on their morphology (shape and
appearance) or their functional characteristics.
There are three basic morphologies:
1. Epithelial-like: cells that are attached to a substrate
and appear flattened and polygonal in shape.
2. Lymphoblast-like: cells that do not attach normally to a
substrate but remain in suspension with a spherical shape.
3. Fibroblast-like: cells that are attached to a substrate and
appear elongated and bipolar, frequently forming swirls in
heavy cultures
Finite vs Continuous Cell Line
Normal cells usually divide only a limited number of times before losing their
ability to proliferate, which is a genetically determined event known as senescence,
these cell lines are known as finite.
However, some cell lines become immortal through a process called
transformation, which can occur spontaneously or can be chemically or virally
induced. When a finite cell line undergoes transformation and acquires the ability
to divide indefinitely, it becomes a continuous cell line.
properties finite continuous
Finite versus Continuous cell lines:
The artificial environment created in the laboratory is generally known as
media.
A media comprises an appropriate source of energy for the cells which they
can easily utilize and compounds which regulate the cell cycle.
The choice of media is cell type specific and often empirical and there is
no “all purpose” medium.
It should provide many nutrients, buffering capacity, isotonic, and should
be sterile.
Characteristics and compositions of the cell culture media vary depending
on the particular cellular requirements as shown in Table 1
Most animal cell culture media are generally having following 10 basic
components and they are as follows:
1. Energy sources: Glucose, Fructose, Amino acids
2. Nitrogen sources: Amino acids
3. Vitamins: Generally water soluble vitamines B & C
4. Inorganic salts: Na+, K+, Ca2+, Mg2+
5. Fat and Fat soluble components: Fatty acids, cholesterols
6. Nucleic acid precursors
7. Antibiotics
8. Growth factors and hormones
9. pH and buffering systems
10. Oxygen and CO2 concentration.
Media used for tissue culture may be grouped into two broad categories:
1. Natural media
2. Artificial media.
The choice of medium depends mainly on the type of cells to be cultured
(normal, immortalized or transformed), and the objective of culture (growth,
survival, differentiation, production of desired proteins).
Non-transformed or normal cells (finite life span) and primary cultures from
healthy tissues require defined quantities of proteins, growth factors and
hormones.
But immortalized cells (spontaneously or by transfection with viral sequences)
produce most of these factors, but may still need some of the growth factors
present in the serum.
In contrast, transformed cells (autonomous growth control and malignant
properties) synthesize their own growth factors; in fact, addition of growth
factors may even be detrimental in such cases. But even these cultures may
require factors like insulin, transferrin, silenite, lipids, etc.
Types of Media
Natural Media
These media consist solely of naturally occurring biological
fluids and are of the following three types:
1. Coagula or clots
2. Biological fluids
3. Tissue extracts.
Artificial Media
Different artificial media have been devised to serve one of the
following purposes:
1. Immediate survival (a balanced salt solution, with specified
pH and osmotic pressure is adequate),
2. Prolonged survival (a balanced salt solution supplemented
with serum, or with suitable formulation of organic compounds),
3. Indefinite growth
4. Specialized functions.
The various artificial media developed for cell cultures may be grouped
into the following four classes:
(i) Serum containing media
(ii) Serum free media
(iii) Chemically defined media
(iv) Protein free media.
SERUM
Liquid yellowish, clear content left over after fibrin and cells are removed
from the blood is known as serum.
Calf (bovine), foetal bovine, or horse are used, in some cases human.
Fetal bovine serum (FBS) (10-20% v/v) is the most commonly applied
supplement in animal cell culture media.
Contents of Serum
Functions of Serum in the Culture Medium
It provides the basic nutrients for cells; the nutrients are present both in
the solution as well as are bound to the proteins.
It provides several hormones, e.g., insulin, which is essential for growth
of nearly all cells in culture, cortisone, testosterone, prostaglandin, etc.
It contains several growth factors, e.g., platelet derived growth factor
(PDGF), transforming growth factor β (TGF-β), epidermal growth factor,
etc.; these are present in concentrations of μg/l.
A major role of serum is to supply proteins, e.g., fibronectin, which
promote attachment of cells to the substrate. It also provides spreading
factors that help the cells to spread out before they can begin to divide.
It provides several binding proteins, e.g., albumin, transferrin, etc., which
carry other molecules into the cell. For example, albumin carries into cells
lipids, vitamins, hormones, etc. Transferrin usually carries Fe in a non-basic
form, but binding of transferrin to its receptor in cell membrane is believed to
be mitogenic.
 It increases the viscosity of medium and thereby, protects cells from
mechanical damages, e.g., shear forces during agitation of suspension
cultures.
 Protease inhibitors present in the serum protect cells, especially trypsinised
cells, from proteolysis.
The serum also provides minerals, like Na+, K+, Fe2+, Zn2+, etc.
 It also acts as a buffer.
Media should provide many nutrients, buffering capacity, isotonic and
sterile. Main components are:
 Energy sources: Glucose, Fructose, Amino acids.
 Nitrogen sources: Amino acids.
 Vitamins: Water soluble vitamin B & C.
 Inorganic salts: Na+, K+, Ca2+, Mg2+ .
 Fat and Fat soluble components: Fatty acids, Cholesterols.
 Nucleic acid precursors.
 Antibiotics.
 Growth factors and hormones.
 pH and buffering systems.
 Oxygen and CO2 concentration.
COMPONENTS OF MEDIUM
MEDIA SUPPLEMENTS:
1.L-Glutamine 200mM,
2.Fetal Bovine serum 10%v/v,
3.HEPES- 25mM,
4.Antibiotics.
CONSTITUENTS OF SERUM
Proteins and Polypeptides
Albumin
Fetuinb
Fibronectin
Globulins
Protease inhibitors: α1-antitrypsin,
α2-macroglobulin.
Transferrin.
Growth factors:
EGF, PDGF, IGF-I and -II,
FGF, IL-1, IL-6.
Amino acids
Lipids
Cholesterol
Fatty acids
Linoleic acid
Phospholipids.
Hormones:
Hydrocortisone
Insulin
Triiodothyronine
Thyroxine.
Vitamins:
Vitamin A
Folate.
Polyamines:
Putrescine,
spermidine.
Urea
Inorganics:
Calcium
Chlorides
Iron
Potassium
Phosphate
Selenium
Sodium
Zinc.
Carbohydrates
Glucose
Hexosamine
Lactic acid
Pyruvic acid
The chemical composition of these supplements may vary between lots,
even from a single manufacturer.
The supplements of animal or human origin may also be contaminated
with infectious agents (e.g., mycoplasma and viruses) which can seriously
undermine the health of the cultured cells when these contaminated
supplements are used in cell culture media formulations and may pose a
health risk in cell therapy and other clinical applications.
A major fear is the presence of prions causing spongiform encephalopathy
in humans or animals.
Cell surface chemistry, which is a critical portion of the in vitro
microenvironment for many cell types, can be adversely modified
via adsorption or incorporation of serum or extract proteins.
Limitation of Media with Serum
The use of undefined components such as serum or animal extracts also
prevents the true definition and elucidation of the nutritional and
hormonal requirements of the cultured cells, thus eliminating the ability
to study, in a controlled way, the effect of specific growth factors or
nutrients on cell growth and differentiation in culture.
Undefined supplements prevent the researcher from studying aberrant
growth and differentiation and the disease related changes in cultured
cells.
Using cell culture media in the industrial production of biological
substances, serum and animal extract supplementation of culture media
can also complicate and increase the costs of the purification of the
desired substances from the culture media due to nonspecific
copurification of serum or extract proteins.
DISADVANTAGES OF SERUM
1.Physiological Variability:
Reason : components include nutrients (amino acids, nucleosides, sugars, etc.),
peptide growth factors, hormones, minerals and lipids, the concentrations and
actions of which have not been fully determined.
2.Shelf Life and Consistency:
Serum deteriorating during the storage time. So It must be replaced with another
batch that may be selected as similar, but will never be identical, to the first batch..
3.Quality Control: Extensive testing to ensure that the replacement is as close as
possible to the previous batch.
4.Specificity:
If more than one cell type is used, each type may require a different batch of
serum, so that several batches must be held on reserve simultaneously.
5.Availability:
the supply of serum is restricted now-a-days because of drought in the cattle-
rearing areas, the spread of disease among the cattle, or economic or political
reasons.
6.Downstream Processing: The presence of serum creates a major obstacle to
product purification
7.Contamination: Serum is frequently contaminated with viruses,
8.Cost: serum constitutes the major part of the cost of a bottle of medium (more
than 10 times the cost of the chemical constituents)
9.Growth Inhibitors: As well as its growth-promoting activity, serum contains
growth-inhibiting activity, and although stimulation usually predominates, the net
effect of the serum is an unpredictable combination of both inhibition and
stimulation of growth.
10.Standardization: Standardization of experimental and production protocols is
difficult, both at different times and among different laboratories, because of batch-
to batch variations in serum.
All of the above problems can be eliminated by removal of serum and
specific media with required factors can be used, thus there will be control
over the proliferation and differentiation.
SERUM-FREE MEDIA
Media, which often are specifically formulated to support the culture of a
single cell type, incorporate defined quantities of purified growth factors,
lipoproteins and other proteins usually provided by the serum or extract
supplement.
Since the components (and concentrations thereof) in such culture media are
precisely known, these media are generally referred to as “defined
culture media” and often as “serum-free media” or “SFM.”
Use of SFM facilitates the investigation of the effects of a specific growth
factor or other medium component on cellular physiology, which may be
masked when the cells are cultivated in serum- or extract-containing Media
SFM typically contain much lower quantities of protein (indeed, SFM are
often termed “low protein media”) than those containing serum or extracts,
rendering purification of biological substances produced by cells cultured in
SFM far simpler and more cost-effective.
DISADVANTAGES OF SERUM-FREE MEDIA:
Multiplicity of Media
 Each cell type appears to require a different recipe tumors may vary in
requirements from tumor to tumor, even within one class of tumors. It presents a
problem for laboratories maintaining cell lines of several different origins.
Selectivity
 Some media may select a sub-lineage and even in continuous cell lines, some
degree of selection is required.
 Cells at different stages of development (e.g. stem cells vs. committed precursor
cells) may require different formulations, particularly in the growth factor and
cytokine components.
Expensive:
 As the removal of serum also removes the protective, detoxifying action so, high
degree of aseptic conditions must be maintained.
Purity of the reagents and water must be high.
Cell Proliferation: Growth is often slower in serum-free media.
Availability: Although improving steadily, the availability of properly quality-
controlled serum-free media is limited.
PHYSICOCHEMICAL PROPERTIES OF CULTURE MEDIUM
1. pH :Most cell lines grow well at pH 7.4.
•Transformed cells may do better at ph 7.0–7.4.
• Phenol red is commonly used as an indicator. It shows-
•More pink at pH 7.6,
•Purple at pH 7.8
•Red at pH 7.4,
•Orange at pH 7.0,
•Yellow at pH 6.5,
•Lemon yellow below pH 6.5.
2. CARBON DIOXIDE :
•To maintain buffering capacity of the medium and to compensate the lost
dissolved gas from medium.
•Generally 0-10% CO2 is supplied.
•5% gas supply from cylinders is widely used.
•CO2 levels are measured by FYRITE UNIT.
DISADVANTAGE
Phenol red has weak
estrogenic activity.
3. BUFFERING :
It is required under two conditions.
(1) open dishes, wherein the evolution of co2 causes the pH to rise and
(2) overproduction of CO2 and lactic acid in transformed cell lines at high cell
concentrations, when the pH will fall.
Widely used buffers:
1.Bicarbonate buffer.
2.Tris buffer.
3.Zwitter ionic buffer (HEPES).
(N-2-Hydroxy ethyl piperazine-N-2-ethane sulfonicacid)
Low Toxicity, Low Cost, and
Nutritionally Benefit.
4. OSMOLALITY
* Osmolalities between 260 mosmol/kg and 320 mosmol/kg are quite acceptable
for most cells but, once selected, should be kept consistent at ±10 mosmol/kg.
*Slightly hypotonic medium may be better for petri dish or open-plate culture to
compensate for evaporation during incubation.
Modifiers : NaCl, Dextrose
5. OXYGEN :
As there is no oxygen carrier (Hb)cells rely chiefly on dissolved O2, which can be
toxic due to the elevation in the level of free radicals. Providing the correct O2
tension is therefore, always a compromise between fulfilling the respiratory
requirement and avoiding toxicity.
So free radical scavengers, such as
Glutathione,
2-Mercaptoethanol (β-mercaptoethanol),
or Dithiothreitol ,
are added into the medium.
SELENIUM is incorporated into the medium which is cofactor for
GLUTATHIONE thus avoid toxicity.
6. TEMPERATURE
●The temperature recommended for most human and warm-blooded animal cell
lines is 37◦C, close to body heat.
●Cultured mammalian cells will tolerate considerable drops in temperature, can
survive several days at 4◦c, and can be frozen and cooled to −196◦c.
MEDIUM APPLICATION AUTHORS
Basal medium Growing cells with serum Eagle 1965
Minimal essential
medium (MEM)
Growing cells with dialyzed
serum
Eagle 1959
Dulbecco’s modified
Eagle’s medium
Virus transfected cells, high
density growth with serum
Dulbecco and Freeman
1959
Ham’s F10 medium Chick embryo cells, serum Ham 1963
RPMI 1640 Human leukemic cells and
Hybridomas
Moore and Kitamura
1968
Mc Coy’s5A medium Human lymphocytes Mc Coy et.al 1959
Neuroblast medium CNS Neurons Brewer et al 1994
MCDB 131 Human endothelium Knedler and Ham 1987
Medium199 Chick embryo fibroblasts Morgal et.al 1950
SOME COMMON COMMERCIALLYAVAILABLE MEDIA
DMEM (Dulbecco's Modified Eagle Medium) Adherent culture.
RPMI (Roswell Park Memorial Institute medium ) Suspension culture.
The three basic classes of media are:
Basal media,
Reduced-serum media,
Serum-free media.
Differ in their requirement for
supplementation with serum.
BASAL MEDIA
The majority of cell lines grow well in basal media, which contain amino acids,
vitamins, inorganic salts, and a carbon source such as glucose, but these basal media
formulations must be further supplemented with serum.
REDUCED-SERUM MEDIA
Another strategy to reduce the undesired effects of serum in cell culture experiments
is to use reduced-serum media. Reduced-serum media are basal media formulations
enriched with nutrients and animal-derived factors, which reduce the amount of
serum that is needed.
SERUM-FREE MEDIA:
Replacing the serum with appropriate nutritional and hormonal formulations.
TYPES OF MEDIUM
ROLE OF MEDIUM
Nutrient support
Maintenance of pH and osmolality
Buffering system
Growth factors
Metabolic support
Antioxidants and reducing agents
Most media (MEM and DMEM) were developed with serum
supplementation
Some are tailored without the serum support to study the specific
effects of defined growth factors
“Special Use Media” are now commercially available for specific
cell lines and contain undisclosed components
CATEGORY ADVANTAGES
ADVANTAGES OF TISSUE CULTURE
DISADVANTAGES OF TISSUE CULTURE
CATEGORY EXAMPLES
 ORGAN CULTURE: Three dimensional culture of un-dis-aggregated tissue
retaining some or all of the histological features of tissue in vivo.
 CELL CULTURE: Culture derived from dispersed cells taken from the
original tissue, dispersed by enzymatic, mechanical or chemical dis
aggregation. The source of cells can also be from primary cultures already
developed else where.
 HISTOTYPIC CULTURE: Reaggregation of cells into a three dimensional
tissue like structure by cultivation of high density cells in artificial media or
matrix (e.g. Collagen gel).
 ORGANOTYPIC CULTURE: Recombining cells of different lineages into
organ like structures.
BIOLOGY OF CULTURED CELLS
Good environment of culturing cells is based on:
1.Nature of substrate.
2.Degree of contact with other cells.
3.Constitution of medium.
4.Constitution of gas.
5.Incubation temperature.
Cadherins
Integrins
Lminin,
Fibronectin,
Hyaluronan
Transmembrane
proteoglycans.
Cell–cell adhesion molecules Cell–substrate interactions
Cell Adhesion Molecules (CAMs) are proteins located on the cell surface involved
with the binding with other cells or with the extracellular matrix(ECM) in the process
called cell adhesion.
INTEGRINS: Are the receptors for
matrix molecules such as fibronectin,
entactin, laminin and collagen which bind
to them via a specific motif usually
containing the arginine–glycine–aspartic
acid (RGD) Sequence.
* Each integrin comprises one α and one
β subunit, the extracellular domains of
which are highly polymorphic, thus
generating considerable diversity among
the integrin.
These proteins are self-interactive;
that is, homologous molecules in
opposing cells interact with each
other
 E-cadherin------ Epithelia cell
 N-cadherin------ Nerve cell
 P-cadherin-------Placenta
Selectins: which binds to the fucosylated receptors
CD34,
GlyCAM-1(glycosylation dependent cell adhesion molecule-1),
PSGL-1(P-selectin glycoprotein ligand-1).
E-Selectin
L-Selectin
CADHERINS INTEGRINS
Cell Adhesion
Evolution of a Cell Line
Lag Phase: The time
the cell population
takes to recover from
sub culture, attach to
the culture vessel
Log Phase: cell
number begins to
increase exponentially.
Plateau Phase: growth
rate slows or stops due
to exhaustion of
growth medium or
confluency
Preparation of primary culture
Adherent Suspension Culture
There are two basic systems for growing cells in culture, as monolayers on an
artificial substrate (i.e., adherent culture) or free-floating in the culture
medium (suspension culture).
REPLACEMENT OF MEDIUM OR FEEDING
A Drop in pH
The rate of fall and absolute level should be considered. Most cells stop growing
as the pH falls from pH 7.0 to pH 6.5 and start to lose viability between pH 6.5
and pH 6.0, so if the medium goes from red through orange to yellow, the medium
should be changed.
Cell Concentration
Cell Type
Morphological Deterioration.
Subculturing or passaging
Subculturing is the removal of the medium and transfer of cells from a
previous culture into fresh growth medium, a procedure that enables the
further propagation of the cell line or cell strain.
When to Subculture?
Density of Culture
Time Since Last Subculture
Exhaustion of Medium.
Requirements for Other Procedures
Subculturing of monolayer
Subculturing of suspension culture
(a) Bacteria.
(b) Yeast. (c) Mold.
(d) Mycoplasma
Types of Contamination
Characteristic features of microbial contamination are as
follows:
(1) A sudden change in pH, usually a decrease with most bacterial infections, very
little change with yeast until the contamination is heavy, and
sometimes an increase in pH with fungal contamination.
(2) Cloudiness in the medium , sometimes with a slight film or scum on the surface
or spots on the growth surface that dissipate when the flask is moved.
(3) Under a low-power microscope (∼×100), spaces between cells will appear
granular and may shimmer with bacterial contamination.
(4) Under high-power microscopy (∼×400), it may be possible to resolve
individual bacteria and distinguish between rods and cocci.
ROUTES TO CONTAMINATION
Technique manipulations, pipetting, dispensing, etc.
Work Operator hair, hands, breath, clothing surface.
Materials and reagents Solutions.
Glassware and screw caps.
Culture flasks and media bottles in use.
Equipment and Facilities Room air. Laminar-Flow Hoods.
CO2, humidified incubators.
Importation of Biological Materials Tissue samples.
Incoming cell lines.
Cell lines in continuous culture are prone to variation due to
selection in early-passage culture senescence in finite cell lines and genetic and
phenotypic instability in continuous cell lines.
why cryopreservation has to be done?
Reasons are as follows:
(1) Genotypic drift due to genetic instability.
(2) Senescence and the resultant extinction of the cell line.
(3) Transformation of growth characteristics and acquisition.
of malignancy-associated properties.
(4) Phenotypic instability due to selection and dedifferentiation.
(5) Contamination by microorganisms .
(6) Cross-contamination by other cell lines.
(7) Misidentification due to careless handling.
(8) Incubator failure.
(9) Saving time and materials maintaining lines not in immediate use.
(10) Need for distribution to other users.
Cryopreservation
PRINCIPLES OF CRYOPRESERVATION
Optimal freezing of cells for maximum viable recovery
on thawing. This is achieved
(a) by freezing slowly to allow water to leave the cell but not so slowly that ice
crystal growth is encouraged,
(b) by using a hydrophilic cryoprotectant to sequester water,
(c) by storing the cells at the lowest possible temperature to
minimize the effects of high salt concentrations on protein denaturation in micelles
within the ice, and
(d) by thawing rapidly to minimize ice crystal growth and generation of
solute gradients formed as the residual intracellular ice melts.
Cell Concentration
Normally at 1 × 105/mL, 1 × 107 should
be frozen in 1 mL of medium, and, after thawing the cells, the whole 1 mL
should be diluted to 20 mL of medium, giving 5 × 105 cells/mL .
Freezing Medium
Dimethyl sulphoxide (DMSO)- widely used.
Glycerol,
Polyvinyl pyrrolidine (PVP),
Polyethylene glycol (PEG),
Hydroxy Ethyl Starch (HES),
Trehalose.
DMSO : drawbacks
Should be colorless.
Stored in glass containers if not it will leach
impurities from plastic or rubber.
Should be diluted if not toxic to cells.
Glycerol: On long storage toxic to cell lines.
Widely used freezing mixture
40%v/v medium with 10%serum,
40%v/v FCS,
20%V/V DMSO/Glycerol.
Procedure for freezing cells
ThawingCells
Medium-Sized Tissue Culture Laboratory layout
Medium-Sized Tissue Culture Laboratory layout
Layout for open work bench in laminar airflow hood
EQUIPMENT AND MATERIALS REQUIRED
ASEPTIC AREA:
Laminar flow hoods,
Inverted microscope,
Centrifuge,
Waterbath,
Refrigerator,
Freezer (-200 C, -800 C),
Liquid nitrogen freezers,
Trolleys and carts,
INCUBATORS:
Normal incubator,
Humid CO2 Incubator,
Hemocytometer slides,
Cell counter.
Mr. Frosty
WASH UPAREA:
Washing sink,
Pipette washer,
Pipette drier,
Glassware washer,
MEDIA
PREPARATION:
Millipore water purifier,
Suction pump,
Conductivity meter,
Magnetic stirrers,
Digital balance,
PH meter,
Osmometer.
STERILIZATION
EQUIPMENT:
Autoclave,
 Hot air oven,
Membrane filters.
CONSUMABLES:
Pipettes,
Culture flasks,
Petri dishes,
 Multiwell plates,
Tip and tipboxes,
Centrifuge tubes,
Glass bottles and
measuring cylinders.
Cell Culture Hoods
unidirectional flow of HEPA-filtered air over the work area.
HORIZONTAL
*Blowing parallel to the work
surface.
* Provides protection to the
culture (if the air flowing towards
the user) or to the user (if the air
is drawn in through the front of
the cabinet by negative air
pressure inside).
VERTICAL
*Blowing from the top of the
cabinet onto the work surface.
* Vertical flow hoods also provide
significant protection to the user
and the cell culture.
HORIZONTAL VERTICAL
*Dry incubators are more economical
but require the cell cultures to be
incubated in sealed flasks to prevent
evaporation.
* Placing a water dish in a dry
incubator can provide some humidity,
but they do not allow precise control
of atmospheric conditions in the
incubator.
*Humid CO2 incubators are more
expensive, but allow superior control of
culture conditions.
*They can be used to incubate cells
cultured in Petri dishes or multi-well
plates, which require a controlled
atmosphere of high humidity and
increased CO2 tension.
DRY INCUBATOR HUMID CO2 INCUBATOR
STERILIZATION EQUIPMENT:
FREESTANDING AUTOCLAVE HOT AIR OVEN
SPECIALIZED EQUIPMENT
Flow cytometer
RT PCR
Colony counter
Culture vessels and their characteristics
SUBSTRATES
ATTACHMENT FOR THE GROWTH AND SPREADING
Cells shown to require attachment for
growth are said to be
‘anchorage dependent’.
cells that have undergone transformation
and can grow in suspension are said to be
‘anchorage independent’.
SUBSTRATE MATERIALS
Disposable plastic:
1.Single-use sterile polystyrene flasks:
●They are usually of good optical quality.
●The growth surface is flat,
●Provides uniformly distributed and reproducible monolayer cultures. As
manufactured, polystyrene is hydrophobic and does not provide a suitable
surface for cell attachment, so tissue culture plastics are treated by corona
discharge, gas plasma, or γ -irradiation, or chemically, to produce a charged,
wettable surface.
2.Polytetrafluorethylene (PTFE; Teflon): Two forms
charged (hydrophilic) uncharged (hydrophobic)
monolayer cells,
organotypic culture.
Suspension cultures,
macrophages.
Others:
polyvinylchloride (PVC),
polycarbonate,
Melinex,
Thermanox (TPX),
Polymethyl methacrylate.
Fibres :
Rayon,
Nylon,
Poly-l-lactic acid (PLA),
Polyglycolic acid.
Derivatized substrates with:
RGD tripeptide,
N-Hydroxy sulphosuccimide etc.
TREATED SURFACES
1.Extracellular matrix (ECM)
Some cell lines like 3T3 or MRC-5 cells (mouse & human fibroblasts respectively)
produce ECM.
When flask is washed with triton x-100 the ecm will be remained.
These flasks can be used for culturing cell lines of our interest.
2.Substrate coating:
Treat the surface with collagen, fibronectin, laminin.
3.Commercially available matices: Matrigel, Natrix, Laminin.
Suspension cultures:
Attatchment is not required but uniform distribution of cell lines must be there
i.e, no sedimentation should occur. So suspending agents are used.
Ex : Agar, Agarose, Methocel
GOOD ASEPTIC TECHNIQUES:
GOOD ASEPTIC TECHNIQUES:
METHODS OF STERILIZATION
STERILE FILTRATION
Filtration through 0.1- to 0.2-μm microporous filters is the method of choice for
sterilizing heat-labile solutions
REFERENCES
Ian Freshney Culture of Animal Cells A Manual of
Basic Technique, 5th Edition.
Handbook for cell culture basics (Gibco).

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UNIT- 10 ANIMAL CELL CULTURE TECHNIQUES (3).pptx

  • 1.
  • 2.  Roux 1885: Embryonic chick cells were maintained in saline  Harrison 1907: Amphibian spinal cord cultivated in lymph produced axons in vitro  Carrel 1913: Cells in a culture can grow continuously under aseptic conditions  Earle 1943: First continuous cell line from L-cell mouse fibroblast.  Gey et.al. , 1952 : Established continuous cell lines derived from human cervical carcinoma – He La cells  Levi Montaleini 1954: NGF stimulated the neuron growth.  Eagle 1955: Developed by a systematic study a Basal medium of the nutrients and the serum for cell culture  Puck et.al.,1956 Selected mutants with altered nutrient requirement  Temin and Rubin 1958: Developed quantitative assay for infection of Rous sarcoma virus in cell culture
  • 3.  Hayflick and Moorehead 1961: Human fibroblasts in culture have finite life time  Littlefield 1964: Introduced HAT medium for for selective growth of somatic cells  Ham 1965: Introduced a defined serum free medium to support the clonal growth of certain mammalian cells  Harris and Watkins 1965: produced first heterokaryon by virus indused fusion  Augusti Tocco and Sato 1968: Neuroblastoma cultures  Koehler and Milstein 1975: Monoclonal antibody secreting hybridoma cell line  Sato et.al. 1976: Published the first series of papers defining the mixtures of hormones and growth factors for different cell lines in serum free media  Wigler and Axel 1977: (Adopting method of Graham and Vander Eb): Single copy mammalian gene in culture cells)
  • 4. What is Tissue/Cell Culture? Refers to the removal of cells or tissues or organs from an animal or plant and their subsequent placement in a favorable artificial environment conducive to growth Environment usually consists of a suitable glass or plastic culture vessel containing a liquid or semisolid medium that supplies the nutrients essential for survival and growth.
  • 5. Primary Culture Primary culture refers to the stage of the culture after the cells are isolated from the tissue and proliferated under the appropriate conditions until they occupy all of the available substrate (i.e., reach confluence). Explant culture Enzymatic dissociation
  • 6. Cell Line After the first subculture, the primary culture becomes known as a cell line or subclone. Cell lines derived from primary cultures have a limited life span (i.e., they are finite) and as they are passaged, cells with the highest growth capacity predominate, resulting in a degree of genotypic and phenotypic uniformity in the population. Cell Strain If a subpopulation of a cell line is positively selected from the culture by cloning or some other method, this cell line becomes a cell strain Buying and Borrowing Buy established cultures from organizations such as ATCC or Coriell institute of Medical Research or RIKEN cell bank or National Centre for Cellular Sciences (NCCS)
  • 7. Cell lines can be propagated as two types of cultures Suspension culture. Anchorage independent Cell cultures from haematopoetic cells. Ex: Leukamia cells, Multiple melanoma cells. Cell cutures from organ or tissues. Ex: Epithelial cells, Fibroblasts. Monolayer culture. Anchorage dependent
  • 8. Types of Cells Cultured cells are usually described based on their morphology (shape and appearance) or their functional characteristics. There are three basic morphologies: 1. Epithelial-like: cells that are attached to a substrate and appear flattened and polygonal in shape. 2. Lymphoblast-like: cells that do not attach normally to a substrate but remain in suspension with a spherical shape. 3. Fibroblast-like: cells that are attached to a substrate and appear elongated and bipolar, frequently forming swirls in heavy cultures
  • 9. Finite vs Continuous Cell Line Normal cells usually divide only a limited number of times before losing their ability to proliferate, which is a genetically determined event known as senescence, these cell lines are known as finite. However, some cell lines become immortal through a process called transformation, which can occur spontaneously or can be chemically or virally induced. When a finite cell line undergoes transformation and acquires the ability to divide indefinitely, it becomes a continuous cell line.
  • 10. properties finite continuous Finite versus Continuous cell lines:
  • 11. The artificial environment created in the laboratory is generally known as media. A media comprises an appropriate source of energy for the cells which they can easily utilize and compounds which regulate the cell cycle. The choice of media is cell type specific and often empirical and there is no “all purpose” medium. It should provide many nutrients, buffering capacity, isotonic, and should be sterile. Characteristics and compositions of the cell culture media vary depending on the particular cellular requirements as shown in Table 1
  • 12. Most animal cell culture media are generally having following 10 basic components and they are as follows: 1. Energy sources: Glucose, Fructose, Amino acids 2. Nitrogen sources: Amino acids 3. Vitamins: Generally water soluble vitamines B & C 4. Inorganic salts: Na+, K+, Ca2+, Mg2+ 5. Fat and Fat soluble components: Fatty acids, cholesterols 6. Nucleic acid precursors 7. Antibiotics 8. Growth factors and hormones 9. pH and buffering systems 10. Oxygen and CO2 concentration.
  • 13. Media used for tissue culture may be grouped into two broad categories: 1. Natural media 2. Artificial media. The choice of medium depends mainly on the type of cells to be cultured (normal, immortalized or transformed), and the objective of culture (growth, survival, differentiation, production of desired proteins). Non-transformed or normal cells (finite life span) and primary cultures from healthy tissues require defined quantities of proteins, growth factors and hormones. But immortalized cells (spontaneously or by transfection with viral sequences) produce most of these factors, but may still need some of the growth factors present in the serum. In contrast, transformed cells (autonomous growth control and malignant properties) synthesize their own growth factors; in fact, addition of growth factors may even be detrimental in such cases. But even these cultures may require factors like insulin, transferrin, silenite, lipids, etc. Types of Media
  • 14. Natural Media These media consist solely of naturally occurring biological fluids and are of the following three types: 1. Coagula or clots 2. Biological fluids 3. Tissue extracts. Artificial Media Different artificial media have been devised to serve one of the following purposes: 1. Immediate survival (a balanced salt solution, with specified pH and osmotic pressure is adequate), 2. Prolonged survival (a balanced salt solution supplemented with serum, or with suitable formulation of organic compounds), 3. Indefinite growth 4. Specialized functions.
  • 15. The various artificial media developed for cell cultures may be grouped into the following four classes: (i) Serum containing media (ii) Serum free media (iii) Chemically defined media (iv) Protein free media. SERUM Liquid yellowish, clear content left over after fibrin and cells are removed from the blood is known as serum. Calf (bovine), foetal bovine, or horse are used, in some cases human. Fetal bovine serum (FBS) (10-20% v/v) is the most commonly applied supplement in animal cell culture media.
  • 17.
  • 18. Functions of Serum in the Culture Medium It provides the basic nutrients for cells; the nutrients are present both in the solution as well as are bound to the proteins. It provides several hormones, e.g., insulin, which is essential for growth of nearly all cells in culture, cortisone, testosterone, prostaglandin, etc. It contains several growth factors, e.g., platelet derived growth factor (PDGF), transforming growth factor β (TGF-β), epidermal growth factor, etc.; these are present in concentrations of μg/l. A major role of serum is to supply proteins, e.g., fibronectin, which promote attachment of cells to the substrate. It also provides spreading factors that help the cells to spread out before they can begin to divide.
  • 19. It provides several binding proteins, e.g., albumin, transferrin, etc., which carry other molecules into the cell. For example, albumin carries into cells lipids, vitamins, hormones, etc. Transferrin usually carries Fe in a non-basic form, but binding of transferrin to its receptor in cell membrane is believed to be mitogenic.  It increases the viscosity of medium and thereby, protects cells from mechanical damages, e.g., shear forces during agitation of suspension cultures.  Protease inhibitors present in the serum protect cells, especially trypsinised cells, from proteolysis. The serum also provides minerals, like Na+, K+, Fe2+, Zn2+, etc.  It also acts as a buffer.
  • 20. Media should provide many nutrients, buffering capacity, isotonic and sterile. Main components are:  Energy sources: Glucose, Fructose, Amino acids.  Nitrogen sources: Amino acids.  Vitamins: Water soluble vitamin B & C.  Inorganic salts: Na+, K+, Ca2+, Mg2+ .  Fat and Fat soluble components: Fatty acids, Cholesterols.  Nucleic acid precursors.  Antibiotics.  Growth factors and hormones.  pH and buffering systems.  Oxygen and CO2 concentration. COMPONENTS OF MEDIUM MEDIA SUPPLEMENTS: 1.L-Glutamine 200mM, 2.Fetal Bovine serum 10%v/v, 3.HEPES- 25mM, 4.Antibiotics.
  • 21. CONSTITUENTS OF SERUM Proteins and Polypeptides Albumin Fetuinb Fibronectin Globulins Protease inhibitors: α1-antitrypsin, α2-macroglobulin. Transferrin. Growth factors: EGF, PDGF, IGF-I and -II, FGF, IL-1, IL-6. Amino acids Lipids Cholesterol Fatty acids Linoleic acid Phospholipids. Hormones: Hydrocortisone Insulin Triiodothyronine Thyroxine. Vitamins: Vitamin A Folate. Polyamines: Putrescine, spermidine. Urea Inorganics: Calcium Chlorides Iron Potassium Phosphate Selenium Sodium Zinc. Carbohydrates Glucose Hexosamine Lactic acid Pyruvic acid
  • 22. The chemical composition of these supplements may vary between lots, even from a single manufacturer. The supplements of animal or human origin may also be contaminated with infectious agents (e.g., mycoplasma and viruses) which can seriously undermine the health of the cultured cells when these contaminated supplements are used in cell culture media formulations and may pose a health risk in cell therapy and other clinical applications. A major fear is the presence of prions causing spongiform encephalopathy in humans or animals. Cell surface chemistry, which is a critical portion of the in vitro microenvironment for many cell types, can be adversely modified via adsorption or incorporation of serum or extract proteins. Limitation of Media with Serum
  • 23. The use of undefined components such as serum or animal extracts also prevents the true definition and elucidation of the nutritional and hormonal requirements of the cultured cells, thus eliminating the ability to study, in a controlled way, the effect of specific growth factors or nutrients on cell growth and differentiation in culture. Undefined supplements prevent the researcher from studying aberrant growth and differentiation and the disease related changes in cultured cells. Using cell culture media in the industrial production of biological substances, serum and animal extract supplementation of culture media can also complicate and increase the costs of the purification of the desired substances from the culture media due to nonspecific copurification of serum or extract proteins.
  • 24. DISADVANTAGES OF SERUM 1.Physiological Variability: Reason : components include nutrients (amino acids, nucleosides, sugars, etc.), peptide growth factors, hormones, minerals and lipids, the concentrations and actions of which have not been fully determined. 2.Shelf Life and Consistency: Serum deteriorating during the storage time. So It must be replaced with another batch that may be selected as similar, but will never be identical, to the first batch.. 3.Quality Control: Extensive testing to ensure that the replacement is as close as possible to the previous batch. 4.Specificity: If more than one cell type is used, each type may require a different batch of serum, so that several batches must be held on reserve simultaneously. 5.Availability: the supply of serum is restricted now-a-days because of drought in the cattle- rearing areas, the spread of disease among the cattle, or economic or political reasons.
  • 25. 6.Downstream Processing: The presence of serum creates a major obstacle to product purification 7.Contamination: Serum is frequently contaminated with viruses, 8.Cost: serum constitutes the major part of the cost of a bottle of medium (more than 10 times the cost of the chemical constituents) 9.Growth Inhibitors: As well as its growth-promoting activity, serum contains growth-inhibiting activity, and although stimulation usually predominates, the net effect of the serum is an unpredictable combination of both inhibition and stimulation of growth. 10.Standardization: Standardization of experimental and production protocols is difficult, both at different times and among different laboratories, because of batch- to batch variations in serum. All of the above problems can be eliminated by removal of serum and specific media with required factors can be used, thus there will be control over the proliferation and differentiation.
  • 26. SERUM-FREE MEDIA Media, which often are specifically formulated to support the culture of a single cell type, incorporate defined quantities of purified growth factors, lipoproteins and other proteins usually provided by the serum or extract supplement. Since the components (and concentrations thereof) in such culture media are precisely known, these media are generally referred to as “defined culture media” and often as “serum-free media” or “SFM.” Use of SFM facilitates the investigation of the effects of a specific growth factor or other medium component on cellular physiology, which may be masked when the cells are cultivated in serum- or extract-containing Media SFM typically contain much lower quantities of protein (indeed, SFM are often termed “low protein media”) than those containing serum or extracts, rendering purification of biological substances produced by cells cultured in SFM far simpler and more cost-effective.
  • 27. DISADVANTAGES OF SERUM-FREE MEDIA: Multiplicity of Media  Each cell type appears to require a different recipe tumors may vary in requirements from tumor to tumor, even within one class of tumors. It presents a problem for laboratories maintaining cell lines of several different origins. Selectivity  Some media may select a sub-lineage and even in continuous cell lines, some degree of selection is required.  Cells at different stages of development (e.g. stem cells vs. committed precursor cells) may require different formulations, particularly in the growth factor and cytokine components. Expensive:  As the removal of serum also removes the protective, detoxifying action so, high degree of aseptic conditions must be maintained. Purity of the reagents and water must be high. Cell Proliferation: Growth is often slower in serum-free media. Availability: Although improving steadily, the availability of properly quality- controlled serum-free media is limited.
  • 28. PHYSICOCHEMICAL PROPERTIES OF CULTURE MEDIUM 1. pH :Most cell lines grow well at pH 7.4. •Transformed cells may do better at ph 7.0–7.4. • Phenol red is commonly used as an indicator. It shows- •More pink at pH 7.6, •Purple at pH 7.8 •Red at pH 7.4, •Orange at pH 7.0, •Yellow at pH 6.5, •Lemon yellow below pH 6.5. 2. CARBON DIOXIDE : •To maintain buffering capacity of the medium and to compensate the lost dissolved gas from medium. •Generally 0-10% CO2 is supplied. •5% gas supply from cylinders is widely used. •CO2 levels are measured by FYRITE UNIT. DISADVANTAGE Phenol red has weak estrogenic activity.
  • 29. 3. BUFFERING : It is required under two conditions. (1) open dishes, wherein the evolution of co2 causes the pH to rise and (2) overproduction of CO2 and lactic acid in transformed cell lines at high cell concentrations, when the pH will fall. Widely used buffers: 1.Bicarbonate buffer. 2.Tris buffer. 3.Zwitter ionic buffer (HEPES). (N-2-Hydroxy ethyl piperazine-N-2-ethane sulfonicacid) Low Toxicity, Low Cost, and Nutritionally Benefit. 4. OSMOLALITY * Osmolalities between 260 mosmol/kg and 320 mosmol/kg are quite acceptable for most cells but, once selected, should be kept consistent at ±10 mosmol/kg. *Slightly hypotonic medium may be better for petri dish or open-plate culture to compensate for evaporation during incubation. Modifiers : NaCl, Dextrose
  • 30. 5. OXYGEN : As there is no oxygen carrier (Hb)cells rely chiefly on dissolved O2, which can be toxic due to the elevation in the level of free radicals. Providing the correct O2 tension is therefore, always a compromise between fulfilling the respiratory requirement and avoiding toxicity. So free radical scavengers, such as Glutathione, 2-Mercaptoethanol (β-mercaptoethanol), or Dithiothreitol , are added into the medium. SELENIUM is incorporated into the medium which is cofactor for GLUTATHIONE thus avoid toxicity. 6. TEMPERATURE ●The temperature recommended for most human and warm-blooded animal cell lines is 37◦C, close to body heat. ●Cultured mammalian cells will tolerate considerable drops in temperature, can survive several days at 4◦c, and can be frozen and cooled to −196◦c.
  • 31. MEDIUM APPLICATION AUTHORS Basal medium Growing cells with serum Eagle 1965 Minimal essential medium (MEM) Growing cells with dialyzed serum Eagle 1959 Dulbecco’s modified Eagle’s medium Virus transfected cells, high density growth with serum Dulbecco and Freeman 1959 Ham’s F10 medium Chick embryo cells, serum Ham 1963 RPMI 1640 Human leukemic cells and Hybridomas Moore and Kitamura 1968 Mc Coy’s5A medium Human lymphocytes Mc Coy et.al 1959 Neuroblast medium CNS Neurons Brewer et al 1994 MCDB 131 Human endothelium Knedler and Ham 1987 Medium199 Chick embryo fibroblasts Morgal et.al 1950 SOME COMMON COMMERCIALLYAVAILABLE MEDIA DMEM (Dulbecco's Modified Eagle Medium) Adherent culture. RPMI (Roswell Park Memorial Institute medium ) Suspension culture.
  • 32. The three basic classes of media are: Basal media, Reduced-serum media, Serum-free media. Differ in their requirement for supplementation with serum. BASAL MEDIA The majority of cell lines grow well in basal media, which contain amino acids, vitamins, inorganic salts, and a carbon source such as glucose, but these basal media formulations must be further supplemented with serum. REDUCED-SERUM MEDIA Another strategy to reduce the undesired effects of serum in cell culture experiments is to use reduced-serum media. Reduced-serum media are basal media formulations enriched with nutrients and animal-derived factors, which reduce the amount of serum that is needed. SERUM-FREE MEDIA: Replacing the serum with appropriate nutritional and hormonal formulations. TYPES OF MEDIUM
  • 33. ROLE OF MEDIUM Nutrient support Maintenance of pH and osmolality Buffering system Growth factors Metabolic support Antioxidants and reducing agents Most media (MEM and DMEM) were developed with serum supplementation Some are tailored without the serum support to study the specific effects of defined growth factors “Special Use Media” are now commercially available for specific cell lines and contain undisclosed components
  • 34.
  • 36. DISADVANTAGES OF TISSUE CULTURE CATEGORY EXAMPLES
  • 37.  ORGAN CULTURE: Three dimensional culture of un-dis-aggregated tissue retaining some or all of the histological features of tissue in vivo.  CELL CULTURE: Culture derived from dispersed cells taken from the original tissue, dispersed by enzymatic, mechanical or chemical dis aggregation. The source of cells can also be from primary cultures already developed else where.  HISTOTYPIC CULTURE: Reaggregation of cells into a three dimensional tissue like structure by cultivation of high density cells in artificial media or matrix (e.g. Collagen gel).  ORGANOTYPIC CULTURE: Recombining cells of different lineages into organ like structures.
  • 38. BIOLOGY OF CULTURED CELLS Good environment of culturing cells is based on: 1.Nature of substrate. 2.Degree of contact with other cells. 3.Constitution of medium. 4.Constitution of gas. 5.Incubation temperature. Cadherins Integrins Lminin, Fibronectin, Hyaluronan Transmembrane proteoglycans.
  • 39. Cell–cell adhesion molecules Cell–substrate interactions Cell Adhesion Molecules (CAMs) are proteins located on the cell surface involved with the binding with other cells or with the extracellular matrix(ECM) in the process called cell adhesion. INTEGRINS: Are the receptors for matrix molecules such as fibronectin, entactin, laminin and collagen which bind to them via a specific motif usually containing the arginine–glycine–aspartic acid (RGD) Sequence. * Each integrin comprises one α and one β subunit, the extracellular domains of which are highly polymorphic, thus generating considerable diversity among the integrin. These proteins are self-interactive; that is, homologous molecules in opposing cells interact with each other  E-cadherin------ Epithelia cell  N-cadherin------ Nerve cell  P-cadherin-------Placenta Selectins: which binds to the fucosylated receptors CD34, GlyCAM-1(glycosylation dependent cell adhesion molecule-1), PSGL-1(P-selectin glycoprotein ligand-1). E-Selectin L-Selectin
  • 42. Evolution of a Cell Line Lag Phase: The time the cell population takes to recover from sub culture, attach to the culture vessel Log Phase: cell number begins to increase exponentially. Plateau Phase: growth rate slows or stops due to exhaustion of growth medium or confluency
  • 44. Adherent Suspension Culture There are two basic systems for growing cells in culture, as monolayers on an artificial substrate (i.e., adherent culture) or free-floating in the culture medium (suspension culture).
  • 45. REPLACEMENT OF MEDIUM OR FEEDING A Drop in pH The rate of fall and absolute level should be considered. Most cells stop growing as the pH falls from pH 7.0 to pH 6.5 and start to lose viability between pH 6.5 and pH 6.0, so if the medium goes from red through orange to yellow, the medium should be changed. Cell Concentration Cell Type Morphological Deterioration.
  • 46. Subculturing or passaging Subculturing is the removal of the medium and transfer of cells from a previous culture into fresh growth medium, a procedure that enables the further propagation of the cell line or cell strain. When to Subculture? Density of Culture Time Since Last Subculture Exhaustion of Medium. Requirements for Other Procedures
  • 49. (a) Bacteria. (b) Yeast. (c) Mold. (d) Mycoplasma Types of Contamination
  • 50. Characteristic features of microbial contamination are as follows: (1) A sudden change in pH, usually a decrease with most bacterial infections, very little change with yeast until the contamination is heavy, and sometimes an increase in pH with fungal contamination. (2) Cloudiness in the medium , sometimes with a slight film or scum on the surface or spots on the growth surface that dissipate when the flask is moved. (3) Under a low-power microscope (∼×100), spaces between cells will appear granular and may shimmer with bacterial contamination. (4) Under high-power microscopy (∼×400), it may be possible to resolve individual bacteria and distinguish between rods and cocci.
  • 51. ROUTES TO CONTAMINATION Technique manipulations, pipetting, dispensing, etc. Work Operator hair, hands, breath, clothing surface. Materials and reagents Solutions. Glassware and screw caps. Culture flasks and media bottles in use. Equipment and Facilities Room air. Laminar-Flow Hoods. CO2, humidified incubators. Importation of Biological Materials Tissue samples. Incoming cell lines.
  • 52. Cell lines in continuous culture are prone to variation due to selection in early-passage culture senescence in finite cell lines and genetic and phenotypic instability in continuous cell lines. why cryopreservation has to be done? Reasons are as follows: (1) Genotypic drift due to genetic instability. (2) Senescence and the resultant extinction of the cell line. (3) Transformation of growth characteristics and acquisition. of malignancy-associated properties. (4) Phenotypic instability due to selection and dedifferentiation. (5) Contamination by microorganisms . (6) Cross-contamination by other cell lines. (7) Misidentification due to careless handling. (8) Incubator failure. (9) Saving time and materials maintaining lines not in immediate use. (10) Need for distribution to other users. Cryopreservation
  • 53. PRINCIPLES OF CRYOPRESERVATION Optimal freezing of cells for maximum viable recovery on thawing. This is achieved (a) by freezing slowly to allow water to leave the cell but not so slowly that ice crystal growth is encouraged, (b) by using a hydrophilic cryoprotectant to sequester water, (c) by storing the cells at the lowest possible temperature to minimize the effects of high salt concentrations on protein denaturation in micelles within the ice, and (d) by thawing rapidly to minimize ice crystal growth and generation of solute gradients formed as the residual intracellular ice melts. Cell Concentration Normally at 1 × 105/mL, 1 × 107 should be frozen in 1 mL of medium, and, after thawing the cells, the whole 1 mL should be diluted to 20 mL of medium, giving 5 × 105 cells/mL .
  • 54. Freezing Medium Dimethyl sulphoxide (DMSO)- widely used. Glycerol, Polyvinyl pyrrolidine (PVP), Polyethylene glycol (PEG), Hydroxy Ethyl Starch (HES), Trehalose. DMSO : drawbacks Should be colorless. Stored in glass containers if not it will leach impurities from plastic or rubber. Should be diluted if not toxic to cells. Glycerol: On long storage toxic to cell lines. Widely used freezing mixture 40%v/v medium with 10%serum, 40%v/v FCS, 20%V/V DMSO/Glycerol.
  • 57.
  • 58. Medium-Sized Tissue Culture Laboratory layout
  • 59. Medium-Sized Tissue Culture Laboratory layout
  • 60. Layout for open work bench in laminar airflow hood
  • 61. EQUIPMENT AND MATERIALS REQUIRED ASEPTIC AREA: Laminar flow hoods, Inverted microscope, Centrifuge, Waterbath, Refrigerator, Freezer (-200 C, -800 C), Liquid nitrogen freezers, Trolleys and carts, INCUBATORS: Normal incubator, Humid CO2 Incubator, Hemocytometer slides, Cell counter. Mr. Frosty WASH UPAREA: Washing sink, Pipette washer, Pipette drier, Glassware washer, MEDIA PREPARATION: Millipore water purifier, Suction pump, Conductivity meter, Magnetic stirrers, Digital balance, PH meter, Osmometer. STERILIZATION EQUIPMENT: Autoclave,  Hot air oven, Membrane filters. CONSUMABLES: Pipettes, Culture flasks, Petri dishes,  Multiwell plates, Tip and tipboxes, Centrifuge tubes, Glass bottles and measuring cylinders.
  • 62. Cell Culture Hoods unidirectional flow of HEPA-filtered air over the work area. HORIZONTAL *Blowing parallel to the work surface. * Provides protection to the culture (if the air flowing towards the user) or to the user (if the air is drawn in through the front of the cabinet by negative air pressure inside). VERTICAL *Blowing from the top of the cabinet onto the work surface. * Vertical flow hoods also provide significant protection to the user and the cell culture.
  • 64. *Dry incubators are more economical but require the cell cultures to be incubated in sealed flasks to prevent evaporation. * Placing a water dish in a dry incubator can provide some humidity, but they do not allow precise control of atmospheric conditions in the incubator. *Humid CO2 incubators are more expensive, but allow superior control of culture conditions. *They can be used to incubate cells cultured in Petri dishes or multi-well plates, which require a controlled atmosphere of high humidity and increased CO2 tension. DRY INCUBATOR HUMID CO2 INCUBATOR
  • 66.
  • 68. Culture vessels and their characteristics
  • 69.
  • 70. SUBSTRATES ATTACHMENT FOR THE GROWTH AND SPREADING Cells shown to require attachment for growth are said to be ‘anchorage dependent’. cells that have undergone transformation and can grow in suspension are said to be ‘anchorage independent’. SUBSTRATE MATERIALS Disposable plastic: 1.Single-use sterile polystyrene flasks: ●They are usually of good optical quality. ●The growth surface is flat, ●Provides uniformly distributed and reproducible monolayer cultures. As manufactured, polystyrene is hydrophobic and does not provide a suitable surface for cell attachment, so tissue culture plastics are treated by corona discharge, gas plasma, or γ -irradiation, or chemically, to produce a charged, wettable surface.
  • 71. 2.Polytetrafluorethylene (PTFE; Teflon): Two forms charged (hydrophilic) uncharged (hydrophobic) monolayer cells, organotypic culture. Suspension cultures, macrophages. Others: polyvinylchloride (PVC), polycarbonate, Melinex, Thermanox (TPX), Polymethyl methacrylate. Fibres : Rayon, Nylon, Poly-l-lactic acid (PLA), Polyglycolic acid. Derivatized substrates with: RGD tripeptide, N-Hydroxy sulphosuccimide etc.
  • 72. TREATED SURFACES 1.Extracellular matrix (ECM) Some cell lines like 3T3 or MRC-5 cells (mouse & human fibroblasts respectively) produce ECM. When flask is washed with triton x-100 the ecm will be remained. These flasks can be used for culturing cell lines of our interest. 2.Substrate coating: Treat the surface with collagen, fibronectin, laminin. 3.Commercially available matices: Matrigel, Natrix, Laminin. Suspension cultures: Attatchment is not required but uniform distribution of cell lines must be there i.e, no sedimentation should occur. So suspending agents are used. Ex : Agar, Agarose, Methocel
  • 76. STERILE FILTRATION Filtration through 0.1- to 0.2-μm microporous filters is the method of choice for sterilizing heat-labile solutions
  • 77. REFERENCES Ian Freshney Culture of Animal Cells A Manual of Basic Technique, 5th Edition. Handbook for cell culture basics (Gibco).

Editor's Notes

  1. The vertical (Y) axis represents total cell growth (assuming no reduction at passage) for a hypothetical cell culture. Total cell number (cell yield) is represented on this axis on a log scale, and the time in culture is shown on the X-axis on a linear scale. Although a continuous cell line is depicted as arising at 14 weeks, with different cells it could arise at any time. Likewise, senescence may occur at any time, but for human diploid fibroblasts it is most likely to occur between 30 and 60 cell doublings, or 10 to 20 weeks, depending on the doubling time. Terms and definitions used are as in the glossary