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How to Write a Scientific Paper
The questions to ask yourself
first…
Is the paper worth writing?
• What’s in the literature?
• “So What?”
• It’s a lot of work (average 20-30 drafts).
Don’t do it unless its worth it.
What do I have to say?
A single question clearly stated with adequate
evidence for the answer.
Try stating the question and its answer in one
simple sentence.
Is it one or more papers?
• Putting too much in one
paper makes it diffuse and
less compelling than if its focused
• Salami Science?
OK, So you want to/need to
write a paper --> next questions
a. What is the right format for the message
(original article/review?)
b. What is the right audience—who cares?
c. What journal should I choose?
Which journal?
• i. Is topic of my paper
within its scope and
format?
• ii. Would it match my
audience?
• iii. Ask mentor or other
senior researchers:
appropriateness
• iv. Impact Factor
• v. Consequences of
wrong decision: time lost;
failure to publish
Calculation for journal impact
factor*
A= total cites in 2015
B= 2015 cites to articles published in
2013-14 (this is a subset of A)
C= number of articles published in 2013-14
D= B/C = 2015 impact factor
*Weights review articles heavily and is higher in
scientifically better populated fields
To find out a journal’s impact
factor
Search on Impact Factor (current year
- 2 years)
(e.g. for now,
search: impact factor 2015
A scientific article as a critical
argument
a. Statement of problem; posing a question
b. Presentation of evidence
c. Assessment of the validity of the
evidence in the face of ..
a. strengths/weaknesses
b. other evidence
d. Conclusions
Literature Search First
• What has been done and what can you
say that’s new?
• Be thorough in your search:---a high
sensitivity/low specificity search.
a. Establishes responsibilities in paper
writing
b. Avoids hurt feelings
The Title Page: Do it early—
title; authors and their order;
sources of support
The Process of Paper Writing
• Create an outline first
• Plan on multiple drafts:
– Filename with dates
– One filename written over with new draft
• Tables/figures early: prompt more analysis
• Deadlines for you and coauthors
The Introduction
• Draw audience in; be
provocative
• Target journal
specific audience
• Identify gaps in
knowledge
• End with
question/hypothesis
Knee Pain, Why?
The Methods Section
 Should include
subheadings
 Write clearly enough
to be understood by
nontechnical reader
and be replicated
 Past tense
The Results Section
• Organize around
tables/figures
• Present tabular results
selectively in text
• Past tense
• No interpretation; just
the facts!
• Tables should stand
on their own
0
10
20
30
40
50
60
70
80
90
before
talk
after
talk
% Fellows
with Papers
Published
The Discussion Section
• 1st paragraph: answer question/hypothesis
• Remainder:
– Evidence pro and con: literature review
– Strengths/limitations of your study
– Implications of findings (be conservative)
– Other findings of your study
• Last Paragraph: conclusion
Getting Tense!
PAST and PRESENT
• When quoting
previously published
work, refer to it in
present tense (e.g.
penicillin treats strep
throat)
• When describing your
own study, refer to
work in past tense
(e.g. we tested a new
antibiotic for strep
throat)
Pop Quiz: The good scientific
paper ...
A. Is focused on a specific question(s).
B. Covers a broad spectrum of disease or
methodologic questions
 Less is More.
Pop Quiz: In a good scientific
paper ...
A: Abstract and tables and figures are
understandable without reading whole
paper.
B. Abstract and tables and figures are
understandable only with reading whole
paper.
Pop Quiz: In a good scientific
paper ...
A: Writing is in passive voice (e.g. it was
found that…).
B. Writing is in active voice (we found
that…).
C. Writing mixes active and passive voice.
Pop Quiz: In a good scientific
paper ...
A: A term defined in the methods section is used
again and again (a rose, a rose, a rose)
B. Various synonyms for a term are used to prevent
reader boredom. (a rose, a flower with a thorny
stem, a fragrant flower)
 Define a term and use it consistently. Otherwise,
you’ll confuse the reader.
Pop Quiz: In a good scientific
paper ...
A: Writing is flowery
B. Writing is concise
Generally, the shorter, the better
Proofread before Submitting
Are terms used consistently throughout?
Do numbers in abstract match numbers in text
and tables?
Do citations in text match references?
Are Syntax and Grammar acceptable
A brief synopsis of writing an
abstract
• It’s a minipaper:
– Introduction (usually 1-2 sentences)
– Methods (often longest part)
– Results
– Discussion is limited to concluding statement
• Like a paper, requires many drafts, most
oriented to presenting argument concisely
Getting the Reviews of Your
Paper
• “The reviewer is always right.” (whether
they are or not!)
• Don’t respond quickly. Digest reviews.
.
If your paper was rejected…
• Was it sent out for
review? If not,
consider changing
type of journal
• If reviews don’t
suggest changes, send
it out quickly to
another journal
• The 3 journal rule.

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Write a Scientific Paper.ppt

  • 1. How to Write a Scientific Paper
  • 2. The questions to ask yourself first…
  • 3. Is the paper worth writing? • What’s in the literature? • “So What?” • It’s a lot of work (average 20-30 drafts). Don’t do it unless its worth it.
  • 4. What do I have to say? A single question clearly stated with adequate evidence for the answer. Try stating the question and its answer in one simple sentence.
  • 5. Is it one or more papers? • Putting too much in one paper makes it diffuse and less compelling than if its focused • Salami Science?
  • 6. OK, So you want to/need to write a paper --> next questions a. What is the right format for the message (original article/review?) b. What is the right audience—who cares? c. What journal should I choose?
  • 7. Which journal? • i. Is topic of my paper within its scope and format? • ii. Would it match my audience? • iii. Ask mentor or other senior researchers: appropriateness • iv. Impact Factor • v. Consequences of wrong decision: time lost; failure to publish
  • 8. Calculation for journal impact factor* A= total cites in 2015 B= 2015 cites to articles published in 2013-14 (this is a subset of A) C= number of articles published in 2013-14 D= B/C = 2015 impact factor *Weights review articles heavily and is higher in scientifically better populated fields
  • 9. To find out a journal’s impact factor Search on Impact Factor (current year - 2 years) (e.g. for now, search: impact factor 2015
  • 10. A scientific article as a critical argument a. Statement of problem; posing a question b. Presentation of evidence c. Assessment of the validity of the evidence in the face of .. a. strengths/weaknesses b. other evidence d. Conclusions
  • 11. Literature Search First • What has been done and what can you say that’s new? • Be thorough in your search:---a high sensitivity/low specificity search.
  • 12. a. Establishes responsibilities in paper writing b. Avoids hurt feelings The Title Page: Do it early— title; authors and their order; sources of support
  • 13. The Process of Paper Writing • Create an outline first • Plan on multiple drafts: – Filename with dates – One filename written over with new draft • Tables/figures early: prompt more analysis • Deadlines for you and coauthors
  • 14. The Introduction • Draw audience in; be provocative • Target journal specific audience • Identify gaps in knowledge • End with question/hypothesis Knee Pain, Why?
  • 15. The Methods Section  Should include subheadings  Write clearly enough to be understood by nontechnical reader and be replicated  Past tense
  • 16. The Results Section • Organize around tables/figures • Present tabular results selectively in text • Past tense • No interpretation; just the facts! • Tables should stand on their own 0 10 20 30 40 50 60 70 80 90 before talk after talk % Fellows with Papers Published
  • 17. The Discussion Section • 1st paragraph: answer question/hypothesis • Remainder: – Evidence pro and con: literature review – Strengths/limitations of your study – Implications of findings (be conservative) – Other findings of your study • Last Paragraph: conclusion
  • 18. Getting Tense! PAST and PRESENT • When quoting previously published work, refer to it in present tense (e.g. penicillin treats strep throat) • When describing your own study, refer to work in past tense (e.g. we tested a new antibiotic for strep throat)
  • 19. Pop Quiz: The good scientific paper ... A. Is focused on a specific question(s). B. Covers a broad spectrum of disease or methodologic questions  Less is More.
  • 20. Pop Quiz: In a good scientific paper ... A: Abstract and tables and figures are understandable without reading whole paper. B. Abstract and tables and figures are understandable only with reading whole paper.
  • 21. Pop Quiz: In a good scientific paper ... A: Writing is in passive voice (e.g. it was found that…). B. Writing is in active voice (we found that…). C. Writing mixes active and passive voice.
  • 22. Pop Quiz: In a good scientific paper ... A: A term defined in the methods section is used again and again (a rose, a rose, a rose) B. Various synonyms for a term are used to prevent reader boredom. (a rose, a flower with a thorny stem, a fragrant flower)  Define a term and use it consistently. Otherwise, you’ll confuse the reader.
  • 23. Pop Quiz: In a good scientific paper ... A: Writing is flowery B. Writing is concise Generally, the shorter, the better
  • 24. Proofread before Submitting Are terms used consistently throughout? Do numbers in abstract match numbers in text and tables? Do citations in text match references? Are Syntax and Grammar acceptable
  • 25. A brief synopsis of writing an abstract • It’s a minipaper: – Introduction (usually 1-2 sentences) – Methods (often longest part) – Results – Discussion is limited to concluding statement • Like a paper, requires many drafts, most oriented to presenting argument concisely
  • 26. Getting the Reviews of Your Paper • “The reviewer is always right.” (whether they are or not!) • Don’t respond quickly. Digest reviews. .
  • 27. If your paper was rejected… • Was it sent out for review? If not, consider changing type of journal • If reviews don’t suggest changes, send it out quickly to another journal • The 3 journal rule.