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Infrastructures Supporting Inter-disciplinary Research - Exemplars from the UK Professor Richard O. Sinnott  eResearch Director, University of Melbourne 9 th  September 2010 [email_address]
Me Job description in a nutshell…  make “e-” happen (Project Consultant on AURIN)
Track Record ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Completed On-Going
AURIN Investment Plan ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Many of these issues addressed by  e-Research and e-Infrastructures
e-Research & e-Infrastructures ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
e-Health Vision Nucleotide sequences Nucleotide structures Gene expressions Protein Structures Protein functions Protein-protein interaction (pathways) Cell Cell signalling Tissues Organs Physiology Organisms Populations SECURITY!!! + environmental, social, geographic …
e-Security ,[object Object],[object Object],[object Object],Service provider 5.  User accesses resource Web site/e-Journal Identity Provider Home Institution W.A.Y.F. Federation User AuthN Log-in once and roam ,[object Object],2.  Shibboleth redirects user   to W.A.Y.F .  service 3. User selects their home institution 4.  Home site authenticates user LDAP
_A _ _ ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
AURIN Work Streams = e-VOs . . . {Resources} {Users} Org 1 {Resources} {Users} Org n VO VO specific agreements
_ A _ _ ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Privileges, Resources, Access Control and Trust Service provider Shib Frontend 5.  Pass  authentication info and attributes   to   auth Z  function Grid Portal 6. M ake final  AuthZ de cision Identity Provider Home Institution W.A.Y.F. Federation User AuthN AuthZ uid ? ? ? ? ? ? ? 1. User points browser at Grid resource/portal 2.  Shibboleth redirects user   to W.A.Y.F .  service 3. User selects their home institution 4.  Home site authenticates user and   pushes attributes to   the   servic e  provider LDAP LDAP
Proof of the Pudding ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
DAMES ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
DAMES GEHDE Data Space ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object]
National e-Infrastructure for Social Simulation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
NeISS Service Portfolio ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
NeISS Tools Workflows
[object Object],[object Object]
NeISS Infrastructure – Exemplars  ,[object Object],[object Object],[object Object],Linking BHPS data to a synthetic population to estimate #smokers in Leeds
NeISS Infrastructure – Exemplars  Each synthetically generated member of a population in a city, region or neighbourhood can be linked, e.g. to BHPS, by matching their demographic characteristics. From this process, additional characteristics can be assigned to the synthetic database using the profiles in the BHPS. The power of this lies in the fact that while the PRM generates in the order of 10 demographic and household attributes, the BHPS has over a thousand attribute fields. In this way, many spatial patterns can be newly inferred. Distribution of elderly people around Newcastle
NeISS Infrastructure – Exemplars  DSM uses a series of sub-models representing key demographic transitions, e.g. marriage, migration, pro-creation, death and so forth Dynamic simulation showing proportional population change between 2001 and 2031 in Birmingham.
NeISS Infrastructure – Exemplars  Three scenarios – congestion charging, road pricing and promotion of non-vehicular alternatives to commuting.  For example, would policies on financial alternatives to leave a car at home and travel to work by bicycle actually work? Float idea to general public via tools like SurveyMapper – use results to gauge public response and inform policy makers, and as basis for calibration of simulation tools. Traffic scenarios
The Wider Context ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
The Wider Context ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object]

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Infrastructures Supporting Inter-disciplinary Research - Exemplars from the UK


  • 1. Infrastructures Supporting Inter-disciplinary Research - Exemplars from the UK Professor Richard O. Sinnott eResearch Director, University of Melbourne 9 th September 2010 [email_address]
  • 2. Me Job description in a nutshell… make “e-” happen (Project Consultant on AURIN)
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  • 6. e-Health Vision Nucleotide sequences Nucleotide structures Gene expressions Protein Structures Protein functions Protein-protein interaction (pathways) Cell Cell signalling Tissues Organs Physiology Organisms Populations SECURITY!!! + environmental, social, geographic …
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  • 9. AURIN Work Streams = e-VOs . . . {Resources} {Users} Org 1 {Resources} {Users} Org n VO VO specific agreements
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  • 11. Privileges, Resources, Access Control and Trust Service provider Shib Frontend 5. Pass authentication info and attributes to auth Z function Grid Portal 6. M ake final AuthZ de cision Identity Provider Home Institution W.A.Y.F. Federation User AuthN AuthZ uid ? ? ? ? ? ? ? 1. User points browser at Grid resource/portal 2. Shibboleth redirects user to W.A.Y.F . service 3. User selects their home institution 4. Home site authenticates user and pushes attributes to the servic e provider LDAP LDAP
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  • 21. NeISS Infrastructure – Exemplars Each synthetically generated member of a population in a city, region or neighbourhood can be linked, e.g. to BHPS, by matching their demographic characteristics. From this process, additional characteristics can be assigned to the synthetic database using the profiles in the BHPS. The power of this lies in the fact that while the PRM generates in the order of 10 demographic and household attributes, the BHPS has over a thousand attribute fields. In this way, many spatial patterns can be newly inferred. Distribution of elderly people around Newcastle
  • 22. NeISS Infrastructure – Exemplars DSM uses a series of sub-models representing key demographic transitions, e.g. marriage, migration, pro-creation, death and so forth Dynamic simulation showing proportional population change between 2001 and 2031 in Birmingham.
  • 23. NeISS Infrastructure – Exemplars Three scenarios – congestion charging, road pricing and promotion of non-vehicular alternatives to commuting. For example, would policies on financial alternatives to leave a car at home and travel to work by bicycle actually work? Float idea to general public via tools like SurveyMapper – use results to gauge public response and inform policy makers, and as basis for calibration of simulation tools. Traffic scenarios
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