Disease Outbreak Monitoring  on the Web Clark Freifeld Research Software Developer Harvard Medical School  Children’s Hospital Informatics Program
www.healthmap.org
 
HealthMap Article Processing Acquisition >20,000 sites  Every hour; 24/7 Clustering Text Matching  Similarity Score   Categorization 1700 disease patterns  5000 location patterns Bayesian Filtering 6 million phrases  91% accuracy
Multi-Stream Alarming: Heat Index Meta-alert composite score, based on Number of sources providing information at a particular location Recentness of alert Marker algorithm Exponentially weighted alerts  Increase heat (redness) for more recent event and higher impact low high Freifeld et al. J Am Med Informatics Assn. 2008.
Limitations of English-language Alerts by country 1-USA: 4351 2-UK: 1018 3-Canada: 880 4-China:737
English
Spanish
French
Russian
Case Study: Legionnaire’s in Spain  June 30th Google (ES) Alert Alert #1 July 2nd ProMED-mail Alert Alert #2 July 4th Google (EN) Alert Alert #3
Early Stats > 200 alerts per day 80,000 alerts so far Alerts in 201 countries  175 disease categories 4 four languages  English (60%) Spanish (20%) French (11%) Russian (9%)
Usage 500-600 visits per day 100,000 unique visitors since 9/06 launch  Top visitors: cdc.gov dhs.gov med.navy.mil, af.mil state.fl.us state.id.us
Public Health Resource
Various implementations International Society for Infectious Disease Liberty Science Museum, NYC HHS Command Center
Tool for general population
Future Directions Improve existing filtering algorithms More sensitive, noisy sources More filters: number of cases, species affected More languages Collaborative networks Other areas: Environmental health Chronic disease Violence, conflict zones Pharmaceuticals Your ideas
Acknowledgments Children’s Hospital Informatics Program @ Harvard-MIT HST John Brownstein, PhD Ken Mandl, MD MPH Ben Reis, PhD Mikaela Keller, PhD Isaac Kohane, MD PhD Carlo Venis (Wabash) Roger Araujo (Peru NMRCD) David Blazes (Peru NMRCD) Aranka Anema (UBC) Larry Madoff (ProMED) Funding Google Foundation National Library of Medicine (NLM) Centers for Disease Control and Prevention Canadian Institutes of Health Research (CIHR)
Contact [email_address] www.healthmap.org www.chip.org

09 Clark Freifeld -- igbos j_

  • 1.
    Disease Outbreak Monitoring on the Web Clark Freifeld Research Software Developer Harvard Medical School Children’s Hospital Informatics Program
  • 2.
  • 3.
  • 4.
    HealthMap Article ProcessingAcquisition >20,000 sites Every hour; 24/7 Clustering Text Matching Similarity Score Categorization 1700 disease patterns 5000 location patterns Bayesian Filtering 6 million phrases 91% accuracy
  • 5.
    Multi-Stream Alarming: HeatIndex Meta-alert composite score, based on Number of sources providing information at a particular location Recentness of alert Marker algorithm Exponentially weighted alerts Increase heat (redness) for more recent event and higher impact low high Freifeld et al. J Am Med Informatics Assn. 2008.
  • 6.
    Limitations of English-languageAlerts by country 1-USA: 4351 2-UK: 1018 3-Canada: 880 4-China:737
  • 7.
  • 8.
  • 9.
  • 10.
  • 11.
    Case Study: Legionnaire’sin Spain June 30th Google (ES) Alert Alert #1 July 2nd ProMED-mail Alert Alert #2 July 4th Google (EN) Alert Alert #3
  • 12.
    Early Stats >200 alerts per day 80,000 alerts so far Alerts in 201 countries 175 disease categories 4 four languages English (60%) Spanish (20%) French (11%) Russian (9%)
  • 13.
    Usage 500-600 visitsper day 100,000 unique visitors since 9/06 launch Top visitors: cdc.gov dhs.gov med.navy.mil, af.mil state.fl.us state.id.us
  • 14.
  • 15.
    Various implementations InternationalSociety for Infectious Disease Liberty Science Museum, NYC HHS Command Center
  • 16.
    Tool for generalpopulation
  • 17.
    Future Directions Improveexisting filtering algorithms More sensitive, noisy sources More filters: number of cases, species affected More languages Collaborative networks Other areas: Environmental health Chronic disease Violence, conflict zones Pharmaceuticals Your ideas
  • 18.
    Acknowledgments Children’s HospitalInformatics Program @ Harvard-MIT HST John Brownstein, PhD Ken Mandl, MD MPH Ben Reis, PhD Mikaela Keller, PhD Isaac Kohane, MD PhD Carlo Venis (Wabash) Roger Araujo (Peru NMRCD) David Blazes (Peru NMRCD) Aranka Anema (UBC) Larry Madoff (ProMED) Funding Google Foundation National Library of Medicine (NLM) Centers for Disease Control and Prevention Canadian Institutes of Health Research (CIHR)
  • 19.

Editor's Notes

  • #2 Surveillance sans frontières: Internet-based emerging infectious disease intelligence