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2016-04-21	THAPBI
PHYTO-THREATS
PUBLICLY-AVAILABLE
PHYTOPHTHORA	GENOME	DATA
SOURCES
Taxonomy	ID:	4783
66	Assemblies,	20	species
2	new	assemblies	since	last	meeting
118	BioProjects	(each	with	>=	1	assembly)
NCBI/RefSeq
10	Genome	Portals	(various	versions)
4	projects:	P.	capsici,	P.	cinnamomi,	P.	ramorum,	P.
sojae	(and	an	endornavirus…)
Data	also	at	NCBI
JGI
Short	read	archive
68	assembly	datasets	(some	duplication/versioning)
ENA
(release	31	current)
14	genomes	(duplication	of	NCBI)
1xP.	infestans,	1xP.	kernoviae,	1xP.	lateralis,	9xP.
parasitica,	1xP.	ramorum,	1xP.	sojae
Ensembl	Compara	
All-vs-all	synteny	comparisons	not	available
(also	 )
Ensembl	Protists
downloadable
downloadable
PhytoPath
STATS
Assemblies	variable
82	contigs	-	250k	contigs	(median	4500)
36Mbp	-	230Mbp	total	length	(median	48Mbp)
ANIM
Phytothreats: WP4 Predicting risk by analysis of Phytophthora genome evolution

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