Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
Carbohydrate & lipid Metabolism_food Sci.pdf
1. ✓ Basic biomolecules (Lipids,
Carbohydrates, nucleic acid,
amino acids)
✓ Basic human physiology
(Metabolism of food,
transport systems etc.)
✓ Food nutritional values and
its importance
2. Syllabus
• Unit I: Enzymology
• Unit II: Molecular aspect of
transport
• Unit III: Metabolism of
carbohydrate
• Unit IV: Metabolism of
Protein
3. What is a metabolic
pathway?
• A metabolic pathway is a series of chemical reactions
that takes a starting molecule and modifies it, step-by-
step, through a series of metabolic intermediates,
eventually yielding a final product.
• It is irreversible and committed to the first step.
• All metabolic pathways are regulated and occurs at
specific cellular location in eukaryotes.
4. Two types of metabolic
pathways
Anabolic pathways are those that
require energy to synthesize larger
molecules.
Catabolic pathways are those that
generate energy by breaking down
larger molecules.
5.
6.
7.
8. Glucose occupies central
position in metabolism
• The complete oxidation of glucose to carbon
dioxide and water proceeds with a standard free-
energy change of 2,840 kJ/mol.
• By storing glucose as a high molecular weight
polymer such as starch or glycogen, a cell can
stockpile large quantities of hexose units while
maintaining a relatively low cytosolic osmolarity.
When energy demands increase, glucose can be
released from these intracellular storage
polymers and used to produce ATP either
aerobically or anaerobically.
9. Glucose occupies central
position in metabolism
• Many tissues can also use fat
or protein as an energy
source but others, such as
the brain and red blood cells,
can only use glucose.
• Glucose is stored in the body
as glycogen. The liver is an
important storage site for
glycogen.
12. Glycolysis = E.M.
Pathway
History of Glycolysis
Breakdown of glucose in
yeast cells
Otto Warburg Hans von Euler-Chelpin
Gustav Embden Otto Meyerhof
Breakdown of glucose in
muscle cells
In 1930,
13. History of Glycolysis
Breakdown of glucose in
yeast cells
Otto Warburg Hans von Euler-Chelpin
Gustav Embden Otto Meyerhof
Breakdown of glucose in
muscle cells
In 1930,
Glycolysis = E.M. Pathway
14. Location: Cytoplasmic fraction
of cell
“Glycolysis is defined as the sequence of reactions converting glucose (or
glycogen) to pyruvate or lactate, with the production of ATP.”
It can occur in absence of oxygen (anerobic) and have the end-product Lactate
It can occur in presence of oxygen (aerobic) and have the end-product Pyruvate
Glycolysis is a major pathway for ATP synthesis in tissues lacking mitochondria, e.g.
erythrocytes, cornea, lens etc.
Glycolysis is very essential for brain which is dependent on glucose for energy. The
glucose in brain has to undergo glycolysis before it is oxidized to CO2 and H2O.
Glycolysis has two major phases: Preparatory phase and Payoff phase
18. Bisphosphate
➢ In a bisphosphate
compound, the two
phosphate moieties are
not attached to each
other, but rather are
bonded at different
places in the compound.
Diphosphate
➢ in a diphosphate
compound, the two
phosphate moieties are
attached to each other
24. Important chemical transformations
1. Degradation of the carbon skeleton of glucose
to yield pyruvate.
2. Phosphorylation of ADP to ATP by high-energy
phosphate compounds formed during
glycolysis
3. Transfer of a hydride ion to NAD⁺ forming
NADH.
25. ATP Formation Coupled to Glycolysis
Glucose + 2NAD + 2ADP + 2Pi 2 pyruvate + 2NADH + 2H + 2ATP + 2H2O
ΔG°= -85kJ/mol
➢ Glycolysis is tightly regulated in coordination with other
energy-yielding pathways to assure a steady supply of
ATP.
➢ Hexokinase, PFK-1, and pyruvate kinase are all subject to
allosteric regulation that controls the flow of carbon
through the pathway and maintains constant levels of
metabolic intermediates.
39. Lactic acid formation ➢ Glycolysis in the erythrocytes leads to lactate
production, since mitochondria the centers for
aerobic oxidation—are absent. Brain, retina,
skin, renal medulla and gastrointestinal tract
derive most of their energy from glycolysis.
➢ Mild forms of lactic acidosis are associated with
strenuous exercise, shock, respiratory diseases,
cancers, etc.
➢ Severe forms of lactic acidosis are observed due
to impairment/collapse of circulatory system
which is often encountered in myocardial
infarction, pulmonary embolism, uncontrolled
hemorrhage and severe shock.
41. RAPAPORT-
LEUBERING CYCLE
➢ This is a supplementary pathway
to glycolysis is in the erythrocytes
of humans and other mammals.
➢ About 15-25% of the glucose
converts to lactate in erythrocytes
goes via 2,3-BPG synthesis.
Significance of 2,3-BPG
1. It is a shunt pathway of
glycolysis to dissipate or waste
the energy not needed by
erythrocytes.
2. It combines with Hb and
reduces its affinity with oxygen.
Therefore, in the presence of
2,3-BPG, oxyhemoglobin
unloads more oxygen to the
tissues.
➢ Increase in erythrocyte 2,3-BPG
is observed in hypoxic condition,
high altitude, anemic condition
and fetal tissues.
46. Location: mitochondrial matrix
Citric acid cycle
Also called Tricarboxylic acid (TCA) cycle or Krebs cycle.
About 65-70% of the ATP is synthesized in Krebs cycle.
Citric acid cycle essentially involves the oxidation of acetyl CoA to
CO2 and H2O.
This cycle utilizes about two thirds of total oxygen consumed by
the body.
It is a central metabolic pathway that connects almost all
metabolic pathway.
49. Offering
Acetyl to
Citrate
Cister
Is
O
K !!! you
Sico
Silly
Funny
Man
Oxaloacetate
Acetyl CoA
Citrate
Cis-Aconitate
Isocitrate
Oxalo-succinate
α-Ketoglutarate
Succinyl CoA
Succinate
Fumarate
Malate
50. Acetyl CoA + 3 NAD+ + FAD + GDP + Pi + 2H2O
2CO2 + 3NADH + 3H+ + FADH2 + GTP + CoA
52. Role of vitamins in
TCA cycle
Thiamine (vitamin B1) as a coenzyme (TPP) for α-ketoglutarate
dehydrogenase
Riboflavin (vitamin B2) as a coenzyme (FAD) for succinate dehydrogenase.
Niacin (vitamin B3) as NAD works as electron acceptor for isocitrate
dehydrogenase, α-ketoglutarate dehydrogenase and malate dehydrogenase.
Pantothenic acid (vitamin B5) as coenzyme A attached to active carboxylic
acid residues i.e. acetyl CoA, succinyl CoA.
55. Regulation of TCA
1. Citrate synthase:
Inhibited by ATP, NADH, Acetyl CoA and Succinyl CoA
Activated by ADP
2. Isocitrate dehydrogenase:
Inhibited by ATP and NADH
Activated by ADP
3. α-Ketoglutarate dehydrogenase:
Inhibited by NADH and Succinyl CoA
Activated by ADP
➢ Availability of ADP is very important for the citric acid cycle to proceed. This is due to the
fact that unless sufficient levels of ADP are available, oxidation (coupled with
phosphorylation of ADP to ATP) of NADH and FADH2 through electron transport chain stops.
61. ▪ Called as NADH dehydrogenase
complex or NADH:ubiquinone oxido-
reductase.
▪ Contains flavin mononucleotides
(FMN) and six iron sulphate (Fe-S)
complexes.
Complex I
Complex II • Called as succinate
dehydrogenase complex.
• The only membrane
bound protein of TCA
cycle.
Complex III • Called as Cytochrome
reductase or Q-cytochrome C
oxidoreductase.
• It is having cytochrome C1 and
cytochrome B.
Complex IV
• Celled as Cytochrome
C Oxidase.
• It has heme and
copper units.
Coenzyme-Q
Cytochrome
C
ATP synthase
97. ATP
calculation
Glycolysis
2 ATP
2 NADH (3 via ATP G3P shuttle or 5
ATP via Malate-Aspartate shuttle)
4 H⁺ ion = 1 ATP
Pyruvate dehydrogenase complex
2 NADH (5 ATP)
TCA
2 GTP (2 ATP)
6 NADH (15 ATP)
2 FADH2 (3 ATP)
100. Gluconeogenesis
▪ Mostly takes place in cytosol of liver cells (1 gm glucose
is synthesized everyday)
Importance of gluconeogenesis
• Brain and central nervous system, erythrocytes, testes
and kidney medulla are dependent on glucose for
continuous supply of energy.
• Glucose is the only source that supplies energy to the
skeletal muscle, under anaerobic conditions.
• In fasting even more than a day, gluconeogenesis must
occur to meet the basal requirements of the body for
glucose and to maintain the intermediates of citric acid
cycle.
• Certain metabolites produced in the tissue accumulate in
the blood, e.g. lactate, glycerol, propionate etc.
Gluconeogenesis effectively clears them from the blood.
102. Gluconeogenesis
It’s an expensive but important process because .......
➢ Citric Acid Cycle Intermediates and Many Amino Acids
Are Glucogenic.
➢ The amino group of these amino acid can be removed
in liver mitochondria and the carbon skeleton enters
the gluconeogenesis pathway.
➢ No net conversion of fatty acids to glucose occurs in
mammalian cells. Rather, it converts to acetyl CoA
that can not be used as precursor for
gluconeogenesis.
104. Lipid
metabolism
Why should fat be the fuel
reserve of the body?
• Triacylglycerols (TG) are highly
concentrated form of energy, yielding 9
Cal/g, in contrast to carbohydrates and
proteins that produce only 4 Cal/g.
• The triacylglycerols are non-polar and
hydrophobic in nature, hence stored in
pure form without any association with
water (anhydrous form).
105. ➢ Breakdown of lipid is by hormone sensitive TG lipase enzyme.
➢ Hormones like epinephrine (most effective), norepinephrine, glucagon, thyroxine, ACTH
etc.— enhance the activity of adenylate cyclase and, thus, increase lipolysis.
➢ On the other hand, insulin decreases cAMP levels and thereby inactivates lipase. Caffeine
promotes lipolysis by increasing cAMP levels through its inhibition on phosphodiesterase
activity.
106. Fate of glycerol
• The adipose tissue lacks the enzyme
glycerol kinase, hence glycerol produced in
lipolysis cannot be phosphorylated here.
• It is transported to liver where it is
activated to glycerol 3-phosphate.
• The latter may be used for the synthesis of
triacylglycerols and phospholipids.
• Glycerol 3-phosphate may also enter
glycolysis by getting converted to
dihydroxyacetone phosphate
107. Fate of free fatty acids
• The fatty acids released in the adipocytes enter the circulation and are
transported in a bound form to albumin.
• The free fatty acids enter various tissues and are utilized for the energy.
• About 95% of the energy obtained from fat comes from the oxidation of
fatty acids.
• Certain tissues, however, cannot oxidize fatty acids, e.g. brain,
erythrocytes.
108. The process involves three stages
1. Activation of fatty acids occurring in the cytosol
2. Transport of fatty acids into mitochondria
3. β-Oxidation proper in the mitochondrial matrix.
FATTY ACID OXIDATION
• The fatty acids in the body are mostly oxidized by β-oxidation.
• β-Oxidation may be defined as the oxidation of fatty acids on the β-carbon atom.
• This results in the sequential removal of two carbon fragment, acetyl CoA.
109. 1. Activation of fatty acids
occurring in the cytosol
• Fatty acids are activated to acyl CoA
by thiokinases or acyl CoA
synthetases.
• Fatty acid reacts with ATP to form
acyladenylate which then combines
with coenzyme A to produce acyl CoA.
• The immediate elimination of PPi
makes this reaction totally
irreversible.
110. • The inner mitochondrial
membrane is
impermeable to fatty
acids.
• A specialized carnitine
carrier system (carnitine
shuttle) operates to
transport activated fatty
acids from cytosol to the
mitochondria.
2. Transport of acyl CoA
into mitochondria
111. This occurs into four stages
1. Acyl group of acyl CoA is
transferred to carnitine
catalyzed by carnitine
acyltransferase I (present on the
outer surface of inner
mitochondrial membrane).
2. Transport of acyl CoA
into mitochondria
112. This occurs into four stages
2. The acyl-carnitine is transported
across the membrane to
mitochondrial matrix by a
specific carrier protein.
2. Transport of acyl CoA
into mitochondria
113. This occurs into four stages
3. Carnitine acyl transferase II
(found on the inner surface of
inner mitochondrial membrane)
converts acyl-carnitine to acyl
CoA.
2. Transport of acyl CoA
into mitochondria
114. This occurs into four stages
4. The carnitine released returns
to cytosol for reuse.
2. Transport of acyl CoA
into mitochondria
115. Inhibitors of carnitine shuttle
• Malonyl CoA inhibits carnitine
acyl transferase.
• So, when fatty acid synthesis is
happening this pathway is
inhibited
2. Transport of acyl CoA
into mitochondria
Carnitine shuttle
116. Each cycle of β-oxidation, liberating two carbon unit-
acetyl CoA, occurs in a sequence of four reactions
1. Oxidation : Acyl CoA undergoes dehydrogenation by
an FAD-dependent flavoenzyme, acyl CoA
dehydrogenase. A double bond is formed between α
and β-carbons
3. β- Oxidation proper
117. Each cycle of β-oxidation, liberating two carbon unit-
acetyl CoA, occurs in a sequence of four reactions
2. Hydration : Enoyl CoA hydratase brings about the
hydration of the double bond to form β-hydroxyacyl
CoA.
3. β- Oxidation proper
118. Each cycle of β-oxidation, liberating two carbon unit-
acetyl CoA, occurs in a sequence of four reactions
3. Oxidation : β-Hydroxyacyl CoA dehydrogenase
catalyzes the second oxidation and generates NADH.
The product formed is β-ketoacyl CoA.
3. β- Oxidation proper
119. Each cycle of β-oxidation, liberating two carbon unit-
acetyl CoA, occurs in a sequence of four reactions
4. Cleavage : The final reaction in β-oxidation is the
liberation of 2 carbon fragment, acetyl CoA from acyl
CoA. This occurs by a thiolytic cleavage catalysed by β-
ketoacyl CoA thiolase (or simply thiolase).
3. β- Oxidation proper
121. Important notes
• Unsaturated fat generates lesser energy than saturated fats
• Diseases like SIDS, Methylmalonic acidemia are result of
deficiencies that hinder the fatty acid metabolism
123. Ketogenesis
• The synthesis of ketone bodies occurs
in the liver.
• The enzymes for ketone body synthesis
are located in the mitochondrial matrix.
124. Utilization of ketone bodies
• They are sources of energy for the peripheral tissues
such as skeletal muscle, cardiac muscle, renal cortex
etc.
• During prolonged starvation, ketone bodies are the
major fuel source for the brain and other parts of
central nervous system.
• The ability of the brain to utilize fatty acids for energy is
very limited. The ketone bodies can meet 50-70% of
the brain’s energy needs.
• This is an adaptation for the survival of the organism
during the periods of food deprivation.