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Dyadic – C1 Technology
October, 2018
Reinventing biological
vaccine and drug
development &
production
DYADIC INFORMATION 2
Safe Harbor Regarding Forward-Looking Statements
Certain statements contained in this presentation are forward-looking statements within the meaning of the
federal securities laws. These forward-looking statements involve risks, uncertainties and other factors that
could cause Dyadic’s actual results, performance or achievements to be materially different from any future
results, performance or achievements expressed or implied by such forward-looking statements. Any
forward-looking statements speak only as of the date of this presentation and, except as required by law,
Dyadic expressly disclaims any intent or obligation to update or revise any forward-looking statements to
reflect actual results, any changes in expectations or any change in events. Factors that could cause results to
differ materially are discussed in Dyadic’s publicly available filings, including information set forth under the
caption “Risk Factors” in our December 31, 2017 Annual Report filed with OTC Markets on March 27, 2018
and our March 31, 2018 Quarterly Report filed with the OTC Markets on May 10, 2018. New risks and
uncertainties arise from time to time, and it is impossible for us to predict these events or how they may
affect us.
DYADIC INFORMATION 3
GRAS certificate for C1
DYADIC INFORMATION 4
Commercial Success in Industrial Biotech > $110 Million
Hyper productive C1 gene expression platform developed
Enzyme expression levels achieved >100 g/l with ~80% purity
 Approved as safe (GRAS) by FDA for food and feed applications
 C1 enzymes produced in up to 500,000 liter scale tanks
 Industrial Enzymes sold to customers in 35 countries
 C1 Related License Deals, Milestones & Equity in excess of $35 million
Dyadic sold its Industrial Technology business
to DuPont’s Industrial Biosciences business (“DuPont”) for
$75 million in cash
12/31/2015
DYADIC INFORMATION 5
Dyadic Board – Decades of Big Pharma Experience
Arindam Bose
Dr. Bose worked at Pfizer for 34 years
and held leadership roles within
bioprocess development and clinical
manufacturing and is widely
recognized as a Key Thought Leader
in the biopharmaceutical industry.
Barry Buckland
Dr. Buckland worked at Merck for 29 years
where he served in a number of senior R&D
leadership roles focusing on fermentation and
bioprocess development and the commercial
manufacturing of biologics and is widely
recognized as a Key Thought Leader in the
biopharmaceutical industry. Currently, Dr.
Buckland is the Executive Director, NIIMBL
(National Institute for Innovation in
Manufacturing Biopharmaceuticals) A public-
private consortium dedicated to advancing
biopharmaceutical manufacturing innovation.
Michael P. Tarnok
Mr. Tarnok (Dyadic chairman) spent
the majority of his career at Pfizer and
is a seasoned finance and operational
executive with extensive experience in
the pharmaceutical industry. Currently
also serves on the Board of the Global
Health Council, and Ionetix, Inc. Prior
Board service includes Keryx
Biopharmaceuticals, Inc., where he also
served as Chairman of the Board.
Vice President, Biotherapeutics
Pharmaceutical Sciences, External
Affairs and Biosimilar Strategy
Vice President, Bioprocess
R&D, Merck Research
Laboratories
Senior Vice President in
Pfizer’s US Pharmaceutical
Division
EXPERIENCELASTPOSITION
DYADIC INFORMATION 6
Dyadic Overview
HQ: Jupiter, FL
BD&L: London
R&D Management: Budapest
R&D: Valladolid
R&D: Helsinki
 1979 FOUNDED
 20+ YEARS EXPERIENCE IN
PHARMA / FUNGAL GENE
EXPRESSION PLATFORMS
DYADIC INFORMATION 7
On-going Research Programs and Collaborations
Mitsubishi Tanabe
Pharma
To help Mitsubishi Tanabe
overcome specific gene
expression challenges of two
important therapeutic
compounds using C1
technology.
Israel Institute for Biological
Research (IIBR)
To further advance C1 for the
development and manufacture of
recombinant vaccines and
neutralizing agents comprising
targeted antigens and
monoclonal antibodies to combat
emerging disease and threats.
Other funded proof of concept
research collaborations
 To explore the potential of C1
technology to produce active
moiety.
 To test the feasibility of C1
technology to produce seven
different molecular biology
enzymes for pharmaceutical use.
Sanofi-Aventis
Fully funded collaboration with
Sanofi-Aventis to explore the
potential of C1 to produce
multiple classes of biologic
vaccines & drugs
DYADIC INFORMATION 8
How Dyadic Leverages C1 Advantages for Biologics
Efficient vast
screening system
for drug discovery
Growing on 24 or 96 MTP
Fast development
timeline for
Biologics
Simple
fermentation
process in
stainless steal
bioreactors
Success in Single
use reactors
Low cost of USP
& DSP
- High productivity -
- Advanced genetic tools (Efficient transformation) -
- Efficient secretory system -
- Low viscosity -
- Wide range of fermentation conditions -
- Fast growing -
- Grow on simple defined media -
- Can tolerant high glucose concentration –
- Easy scaling up (was scaled up to 100m3)-
9
C1 Strain Development for Therapeutic Protein Production
LC strain
Low background
High proteolytic
HC strain
High Background
High proteolytic
0.1 g/L
1.0 g/L
2.0 g/L
10 g/L
15 g/L
? g/L
DNL103 - DNL115
Lower proteolytic
background
DNL120 -
Lower proteolytic
background
2016 2017 2018 2019 2020
DNL ?
Very Low proteolytic
background
(80 g/l enzyme for Bioindustrials application)
(120 g/l cellulosic enzyme for Biofuel)
New C1 strains
for biologics
Glycoengineering
DYADIC INFORMATION
DYADIC INFORMATION 10
Production of Stable Proteins
 The viability of the protease
deletion strains was not
negatively affected
 Growth rate of protease deletion
strains increased at one of the
steps – 2.0h generation time
Under construction
C1 Lineage of
Proteases
Deletion Strains
11
The Protease Expression Library
 C1 proteases were identified and expressed individually in P. pastoris as secreted proteins
 The proteases were identified by RNASeq, Zymogram and genome analysis.
 Example: identification of proteases that affecting the stability of a specific protein: (e.g., an Antigen)
• Purified Antigen (produced in C1) was spiked into culture supernatants of the protease library and
degradation was analyzed after 3h incubation (only half of the selected proteases are presented)
• The proteases that were found to be involved in Antigen degradation were subjected to the
protease deletion strain process.
Conrol
Standard
384
393
390
393
401
410
413
416
417
426
430
436
388
398
381
N
start
Prot.A
Prot.B
100
75
50
37
25
20
100
75
50
37
25
20
Prot.C
Prot.D
Prot.G
Prot.E
Prot.F
Prot.H
Example of the identification of several
active proteases by the C1 expression library
DYADIC INFORMATION
DYADIC INFORMATION 12
Reducing the Proteolytic Activity
1) Protease deletion strains 2) Wide range of Temperature 3) Wide range of pHs
The 10-12 X protease deletion strains, under
production at optimized temp. and pH will
be used to produce stable Biologics
DYADIC INFORMATION 13
Glycoengineering in C1
The goals for C1 glycoengineering
1. High levels of G0 glycans
2. Adding fucosylation: high FG0
3. Adding galactosylation: high G2 and FG2
4. Good N-glycosylation site occupancy on therapeutic proteins (Mabs)
C1 typical Glycan structure
 Unlike most fungi and yeasts, C1 does not have ‘high’ mannose (branched 30-
50 mannose species), but rather has ‘oligo’ mannose and hybrid-type
structure.
 The native C1 glycan pattern is relatively complex with high mannose type
(Man3-Man9) and hybrid type (Man3HexNac-Man8HexNac) glycan forms
 So far, O-glycosylation was not identified in therapeutic proteins
expressed in C1 but minor level is still possible
C1 future Glycostructures
 Glycoengineering work is being applied to C1 strain to create a
strain that produces proteins with defined human glycoforms
 2 approaches are being applied: i) ’Classical’ mammalian
pathway, ii) Alg3 pathway.
 About 13 steps will be applied for 1.5 – 2 years work
 The first steps of Glycoengineering C1 cells have been done
successfully.
G0 G0F G2 G2F
14
Applying alg3 deletion pathway
We have deleted the C1 Δalg3 gene and over-expressed a native or a
heterologous Mannosidase I from alg3 locus
 With Δalg3 deletion only the Man3 level is about 50%
 With both modifications Man3 level rises up to 80%
 All fungal type high mannose and hybrid glycans are omitted
 Proteodynamics (France) analyzed glycans from
native protein samples of glycoengineered C1 strains
(indicated) by permethylation + MALDI-TOF analysis
• No fungal high mannose structures present
• Up to 80% of Man3 structure, the important
precursor for human glycoforms
 No negative effects on cell viability have been
observed with any of the modifications done
DYADIC INFORMATION
15
Near future goals in glycoengineering
 50% G0 levels by the end of 2018
 80% G0 levels by end of Q2 2019
 80% FG0 levels by September 2019
G0 G0FM3
DYADIC INFORMATION
DYADIC INFORMATION 16
C1 Fermentation Technology
Fed-batch
Process
From MTP to Large scale
mAbs productivity
24 wells MTP – 1mg/4ml
1L fermentor – 1.7/g/l/d
30L fermentor – 2.4 g/l/d
 Easily available defined media components – glucose, salts, micro and macro elements, AA, vitamins.
 Fed-batch technology with glucose feeding
 Low viscosity culture due to morphology changes (propagule)
 No need for induction
 Protein is secreted to the media
 30-40% biomass
 pH: 5-8, Temp: 25 - 42°C.
 1L to 500,000L fermentation scale
DYADIC INFORMATION 17
MAbY Expressions by C1
Fermentations carried out for mAbY
production with vessel volumes, culture
volumes, and antibody titres.
SDS gel analysis of the mAbY antibody purified from
the fermentations by protein A affinity
chromatography:
A. Fermentation MT15 in a 10 litre vessel,
B. Fermentations MT16-18 in a 1 litre vessel.
Input depicts the sample loaded to the protein A
column, fr4-fr6 are the elution fractions obtained from
the chromatography.
Samples of CHO-produced mAbY are shown as
controls.
Ferm entation
#
Vessel volume
(1)
Initial (final)
culture volume (1)
Antibody
titre (g/l)
15 10 8 (10.5) 8.0
16 1 0.8 (1.1) 6.3
17 1 0.8 (1.1) 6.5
18 1 0.8 (1.1) 7.9
DYADIC INFORMATION 18
MAbY Binding Assay by Biacore T200
Studying the interaction of mAbs in real time
 MAbY for which the ligand was commercially
available was produced in CHO (control Mab) and
C1 (C1-produed mAb)
 The binding properties of a pharma’s mAbs to the
ligand were compared in a Biacore T200 assay
 The control mAbY and C1-produced MAbY
showed virtually indistinguishable binding
kinetics.
 Similar results were obtained with other mAb
mAbY
Ligand
DYADIC INFORMATION 19
Media and process Development
Medium plus feeding
improvement lead to a mAbY
titer of 9 g/L at 90 h, and increase
in specific productivity
+ 50%
mAbY production titer (g/L)
X 2.3
Specific mAbY production (g/g total protein)
€/g
DYADIC INFORMATION 20
Success in Expressing Certolizumab (Fab) by C1
 Successful expression of Certolizumab
 ELISA kit was used to measure and conform Certolizumab expression level (triplicates of samples were
quantified)
 The calculated expression level was 12.0 g/l, corresponding to 2.6 g/l/day production rate.
 By further optimization of the fermentation process up to 7 days we would expect to see even higher
expression levels.
7 days = 18 g/L
2 X 7 days = 36 g/L
Certolizumab production (g/L)
DYADIC INFORMATION 21
Success In Fc-Fusion Expressions by C1
 Successful expression of Fc-Fusion protein
 C1 expressing Fc-Fusion was cultivated in 1 litre fermentors at 38oC and the product was analysed by Western
Blotting
 The protein A purification yield from day 6 was 8.1 g/l, corresponding to 1.35 g/l/day production rate.
 The fermentation was not fully optimized
22
Protease deficient strains 9Δ-10Δ: - spiking with Fc-Fusion (*)
 24-well cultivation of protease deficient strains in standard production medium at 35°C, day 4 supernatants
 Fc-Fusion reference, ProA purified, 25ng/µl in spiking reactions at 35°C
 Time points 0h, 1h, 3h, o/n and o/2n
 Detection with Fc-antibody (red) and Fused protein antibody (green) -> combined signal is yellow
 Fc-Fusion stays intact in all supernatants, especially in the one from 10Δ Prot. D strain
 Different FC-Fusion molecule than in slide 28
DYADIC CONFIDENTIAL INFORMATION
DYADIC INFORMATION 23
Success In Bispecific Expression
In a few months work we have been able to express a bispecific
antibody using C1 and provide sufficient quantities of this antibody to
our collaborator which they were not able to do previously using other
expression systems after two years of work.
Purified samples of bispecific protein
24
Blue – C1-produced bispecific
Red – CHO-produced bispecific
Bispecific produced in C1 and CHO have identical/similar activity
• C1- and CHO-produced bispecifics were assayed in an in vitro cellular activity assay
• The dose response curves are very similar
• No negative effects of the C1-derived potential impurities in cellular assays
DYADIC CONFIDENTIAL INFORMATION
25
Success in Expressing High Level of ZAPI Antigen
The New strain using SES promoter system significantly increased the production and stability of
the target antigen when 723 mg/L was reached in 94 hrs.
 SES construct was transformed in two 8x protease deletion strains transformants were cultivated in 24-well
MTP with the addition of protease inhibitors.
 SES clones with several fold increase in production (compared to bgl) were identified
DYADIC INFORMATION
DYADIC INFORMATION 26
Ch-VLP Platform Technology Basis
VP2 protein is a structural protein of the Infectious Bursitis virus (IBDV;
Gumboro) what naturally auto assemble forming Virus Like Particles
Translation
Assembling
process
x60
VLPs
VP2
protein
VP2
gene
(+34) 983 54 85 63
info@bdibiotech.com
C/ Louis Proust, 13
47151 Boecillo (Valladolid) - Spain
DYADIC INFORMATION 27
Success in expressing secreted VLP by C1
VLP is expressed into DNL121 under bgl promoter.
 Productivity reaches 300mg/L
 Intracellular remains around 70mg/L
Extracelular-VLP
Intracelular-VLP
DYADIC INFORMATION 28
Visualization of VLPs Produced by C1
Intracellular and extracellular fractions of SP-VLP have been visualized by
Transmission Electronic Microscopy (TEM)
 Extracellular VLPs produced by C1 are
perfectly conformed. The structure is
homogeneous in size and aspect.
 The production level of the extracellular VLP
produced by C1 was 300 mg/L.
 The production level of the intracellular
remained VLP produced by C1 was 70 mg/L
 In comparison, extracellular fraction couldn’t
be produced by S. cerevisiae.
 Intracellular VLP produced by S. cerevisiae
reached a level of 70 mg/L
VLP produced by C1 Control
Extracellular
fraction
Intracellular
fraction
S. cerevisiae
300mg/L (112,5H) 70mg/L (112,5H) 70mg/L
DYADIC INFORMATION 29
The Expression of Recombinant HAs by C1
Expression and performance of 5 different HA’s
Influenza strain Expression Functional HA
New Caledonia, A (H1N1) Yes Yes
Texas, A (H1N1) Yes Yes
Puerto Rico A (H1N1) Yes Yes
California, A (H1N1) Yes Yes
Florida B Yes Yes
Agglutination test• Expressed as a membrane-bound trimer
• Titers variable
DYADIC INFORMATION 30
Immunogenicity Study of HA/NC Produced by C1
HA/New Caledonia
 The full length recombinant HA
produced in C1 did not induce any
negative clinical signs in mice.
• No weight loss.
• No negative clinical signs during
the experiment (visual
observations taken each day).
 The full length of HA/New
Caledonia produced in C1
showed excellent immunogenic
properties in mice better than
the control of HA/New
Caledonia produced by
Baculovirus.
 C1 can potentially produce levels of 1 g/L of
HAs and other antigens in 5 days fermentation
therefore:
• In seasonal Influenza Vaccine—total doses
distributed = 146M/year
• Each 0.5 mL dose is formulated to contain: 15
µg of HA for each strain.
• Thus, 3 X 1000L scale fermentation runs will be
able to supply the annual global HA/strain
needs against Influenza of 2,175 g.
DYADIC INFORMATION 31
Metabolic modeling and Proteomic Analysis for Next
Stage of Strain Engineering
Based on C1 genomic sequence, CoReCo platform for metabolic model reconstruction was
used to build a genome-scale metabolic model of C1 for further strain development work
CoReCo:
Esa Pitkänen et al. 2014 Plos Comput Biol.
Sandra Castillo et al. 2016 Biotechnol Biofuels.
DYADIC INFORMATION 32
Summary
Shorter development &
production cycles
Higher protein yields
Lower CapEx/OpEx
Higher purity & greater
protein recovered
Low Cost Media / No
Viral Inactivation
No negative clinical
signs in mice studies
R&D
Collaborations
Licensing
Arrangements
Other Commercial
Opportunities
Dyadic is looking for partners in the biopharmaceutical space to
exploit the potential of C1. Contact mjones@dyadic.com
Thank You
October 2018
Reinventing biological
vaccine and drug
development &
production

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Dyadic technology oct 2018

  • 1. Dyadic – C1 Technology October, 2018 Reinventing biological vaccine and drug development & production
  • 2. DYADIC INFORMATION 2 Safe Harbor Regarding Forward-Looking Statements Certain statements contained in this presentation are forward-looking statements within the meaning of the federal securities laws. These forward-looking statements involve risks, uncertainties and other factors that could cause Dyadic’s actual results, performance or achievements to be materially different from any future results, performance or achievements expressed or implied by such forward-looking statements. Any forward-looking statements speak only as of the date of this presentation and, except as required by law, Dyadic expressly disclaims any intent or obligation to update or revise any forward-looking statements to reflect actual results, any changes in expectations or any change in events. Factors that could cause results to differ materially are discussed in Dyadic’s publicly available filings, including information set forth under the caption “Risk Factors” in our December 31, 2017 Annual Report filed with OTC Markets on March 27, 2018 and our March 31, 2018 Quarterly Report filed with the OTC Markets on May 10, 2018. New risks and uncertainties arise from time to time, and it is impossible for us to predict these events or how they may affect us.
  • 3. DYADIC INFORMATION 3 GRAS certificate for C1
  • 4. DYADIC INFORMATION 4 Commercial Success in Industrial Biotech > $110 Million Hyper productive C1 gene expression platform developed Enzyme expression levels achieved >100 g/l with ~80% purity  Approved as safe (GRAS) by FDA for food and feed applications  C1 enzymes produced in up to 500,000 liter scale tanks  Industrial Enzymes sold to customers in 35 countries  C1 Related License Deals, Milestones & Equity in excess of $35 million Dyadic sold its Industrial Technology business to DuPont’s Industrial Biosciences business (“DuPont”) for $75 million in cash 12/31/2015
  • 5. DYADIC INFORMATION 5 Dyadic Board – Decades of Big Pharma Experience Arindam Bose Dr. Bose worked at Pfizer for 34 years and held leadership roles within bioprocess development and clinical manufacturing and is widely recognized as a Key Thought Leader in the biopharmaceutical industry. Barry Buckland Dr. Buckland worked at Merck for 29 years where he served in a number of senior R&D leadership roles focusing on fermentation and bioprocess development and the commercial manufacturing of biologics and is widely recognized as a Key Thought Leader in the biopharmaceutical industry. Currently, Dr. Buckland is the Executive Director, NIIMBL (National Institute for Innovation in Manufacturing Biopharmaceuticals) A public- private consortium dedicated to advancing biopharmaceutical manufacturing innovation. Michael P. Tarnok Mr. Tarnok (Dyadic chairman) spent the majority of his career at Pfizer and is a seasoned finance and operational executive with extensive experience in the pharmaceutical industry. Currently also serves on the Board of the Global Health Council, and Ionetix, Inc. Prior Board service includes Keryx Biopharmaceuticals, Inc., where he also served as Chairman of the Board. Vice President, Biotherapeutics Pharmaceutical Sciences, External Affairs and Biosimilar Strategy Vice President, Bioprocess R&D, Merck Research Laboratories Senior Vice President in Pfizer’s US Pharmaceutical Division EXPERIENCELASTPOSITION
  • 6. DYADIC INFORMATION 6 Dyadic Overview HQ: Jupiter, FL BD&L: London R&D Management: Budapest R&D: Valladolid R&D: Helsinki  1979 FOUNDED  20+ YEARS EXPERIENCE IN PHARMA / FUNGAL GENE EXPRESSION PLATFORMS
  • 7. DYADIC INFORMATION 7 On-going Research Programs and Collaborations Mitsubishi Tanabe Pharma To help Mitsubishi Tanabe overcome specific gene expression challenges of two important therapeutic compounds using C1 technology. Israel Institute for Biological Research (IIBR) To further advance C1 for the development and manufacture of recombinant vaccines and neutralizing agents comprising targeted antigens and monoclonal antibodies to combat emerging disease and threats. Other funded proof of concept research collaborations  To explore the potential of C1 technology to produce active moiety.  To test the feasibility of C1 technology to produce seven different molecular biology enzymes for pharmaceutical use. Sanofi-Aventis Fully funded collaboration with Sanofi-Aventis to explore the potential of C1 to produce multiple classes of biologic vaccines & drugs
  • 8. DYADIC INFORMATION 8 How Dyadic Leverages C1 Advantages for Biologics Efficient vast screening system for drug discovery Growing on 24 or 96 MTP Fast development timeline for Biologics Simple fermentation process in stainless steal bioreactors Success in Single use reactors Low cost of USP & DSP - High productivity - - Advanced genetic tools (Efficient transformation) - - Efficient secretory system - - Low viscosity - - Wide range of fermentation conditions - - Fast growing - - Grow on simple defined media - - Can tolerant high glucose concentration – - Easy scaling up (was scaled up to 100m3)-
  • 9. 9 C1 Strain Development for Therapeutic Protein Production LC strain Low background High proteolytic HC strain High Background High proteolytic 0.1 g/L 1.0 g/L 2.0 g/L 10 g/L 15 g/L ? g/L DNL103 - DNL115 Lower proteolytic background DNL120 - Lower proteolytic background 2016 2017 2018 2019 2020 DNL ? Very Low proteolytic background (80 g/l enzyme for Bioindustrials application) (120 g/l cellulosic enzyme for Biofuel) New C1 strains for biologics Glycoengineering DYADIC INFORMATION
  • 10. DYADIC INFORMATION 10 Production of Stable Proteins  The viability of the protease deletion strains was not negatively affected  Growth rate of protease deletion strains increased at one of the steps – 2.0h generation time Under construction C1 Lineage of Proteases Deletion Strains
  • 11. 11 The Protease Expression Library  C1 proteases were identified and expressed individually in P. pastoris as secreted proteins  The proteases were identified by RNASeq, Zymogram and genome analysis.  Example: identification of proteases that affecting the stability of a specific protein: (e.g., an Antigen) • Purified Antigen (produced in C1) was spiked into culture supernatants of the protease library and degradation was analyzed after 3h incubation (only half of the selected proteases are presented) • The proteases that were found to be involved in Antigen degradation were subjected to the protease deletion strain process. Conrol Standard 384 393 390 393 401 410 413 416 417 426 430 436 388 398 381 N start Prot.A Prot.B 100 75 50 37 25 20 100 75 50 37 25 20 Prot.C Prot.D Prot.G Prot.E Prot.F Prot.H Example of the identification of several active proteases by the C1 expression library DYADIC INFORMATION
  • 12. DYADIC INFORMATION 12 Reducing the Proteolytic Activity 1) Protease deletion strains 2) Wide range of Temperature 3) Wide range of pHs The 10-12 X protease deletion strains, under production at optimized temp. and pH will be used to produce stable Biologics
  • 13. DYADIC INFORMATION 13 Glycoengineering in C1 The goals for C1 glycoengineering 1. High levels of G0 glycans 2. Adding fucosylation: high FG0 3. Adding galactosylation: high G2 and FG2 4. Good N-glycosylation site occupancy on therapeutic proteins (Mabs) C1 typical Glycan structure  Unlike most fungi and yeasts, C1 does not have ‘high’ mannose (branched 30- 50 mannose species), but rather has ‘oligo’ mannose and hybrid-type structure.  The native C1 glycan pattern is relatively complex with high mannose type (Man3-Man9) and hybrid type (Man3HexNac-Man8HexNac) glycan forms  So far, O-glycosylation was not identified in therapeutic proteins expressed in C1 but minor level is still possible C1 future Glycostructures  Glycoengineering work is being applied to C1 strain to create a strain that produces proteins with defined human glycoforms  2 approaches are being applied: i) ’Classical’ mammalian pathway, ii) Alg3 pathway.  About 13 steps will be applied for 1.5 – 2 years work  The first steps of Glycoengineering C1 cells have been done successfully. G0 G0F G2 G2F
  • 14. 14 Applying alg3 deletion pathway We have deleted the C1 Δalg3 gene and over-expressed a native or a heterologous Mannosidase I from alg3 locus  With Δalg3 deletion only the Man3 level is about 50%  With both modifications Man3 level rises up to 80%  All fungal type high mannose and hybrid glycans are omitted  Proteodynamics (France) analyzed glycans from native protein samples of glycoengineered C1 strains (indicated) by permethylation + MALDI-TOF analysis • No fungal high mannose structures present • Up to 80% of Man3 structure, the important precursor for human glycoforms  No negative effects on cell viability have been observed with any of the modifications done DYADIC INFORMATION
  • 15. 15 Near future goals in glycoengineering  50% G0 levels by the end of 2018  80% G0 levels by end of Q2 2019  80% FG0 levels by September 2019 G0 G0FM3 DYADIC INFORMATION
  • 16. DYADIC INFORMATION 16 C1 Fermentation Technology Fed-batch Process From MTP to Large scale mAbs productivity 24 wells MTP – 1mg/4ml 1L fermentor – 1.7/g/l/d 30L fermentor – 2.4 g/l/d  Easily available defined media components – glucose, salts, micro and macro elements, AA, vitamins.  Fed-batch technology with glucose feeding  Low viscosity culture due to morphology changes (propagule)  No need for induction  Protein is secreted to the media  30-40% biomass  pH: 5-8, Temp: 25 - 42°C.  1L to 500,000L fermentation scale
  • 17. DYADIC INFORMATION 17 MAbY Expressions by C1 Fermentations carried out for mAbY production with vessel volumes, culture volumes, and antibody titres. SDS gel analysis of the mAbY antibody purified from the fermentations by protein A affinity chromatography: A. Fermentation MT15 in a 10 litre vessel, B. Fermentations MT16-18 in a 1 litre vessel. Input depicts the sample loaded to the protein A column, fr4-fr6 are the elution fractions obtained from the chromatography. Samples of CHO-produced mAbY are shown as controls. Ferm entation # Vessel volume (1) Initial (final) culture volume (1) Antibody titre (g/l) 15 10 8 (10.5) 8.0 16 1 0.8 (1.1) 6.3 17 1 0.8 (1.1) 6.5 18 1 0.8 (1.1) 7.9
  • 18. DYADIC INFORMATION 18 MAbY Binding Assay by Biacore T200 Studying the interaction of mAbs in real time  MAbY for which the ligand was commercially available was produced in CHO (control Mab) and C1 (C1-produed mAb)  The binding properties of a pharma’s mAbs to the ligand were compared in a Biacore T200 assay  The control mAbY and C1-produced MAbY showed virtually indistinguishable binding kinetics.  Similar results were obtained with other mAb mAbY Ligand
  • 19. DYADIC INFORMATION 19 Media and process Development Medium plus feeding improvement lead to a mAbY titer of 9 g/L at 90 h, and increase in specific productivity + 50% mAbY production titer (g/L) X 2.3 Specific mAbY production (g/g total protein) €/g
  • 20. DYADIC INFORMATION 20 Success in Expressing Certolizumab (Fab) by C1  Successful expression of Certolizumab  ELISA kit was used to measure and conform Certolizumab expression level (triplicates of samples were quantified)  The calculated expression level was 12.0 g/l, corresponding to 2.6 g/l/day production rate.  By further optimization of the fermentation process up to 7 days we would expect to see even higher expression levels. 7 days = 18 g/L 2 X 7 days = 36 g/L Certolizumab production (g/L)
  • 21. DYADIC INFORMATION 21 Success In Fc-Fusion Expressions by C1  Successful expression of Fc-Fusion protein  C1 expressing Fc-Fusion was cultivated in 1 litre fermentors at 38oC and the product was analysed by Western Blotting  The protein A purification yield from day 6 was 8.1 g/l, corresponding to 1.35 g/l/day production rate.  The fermentation was not fully optimized
  • 22. 22 Protease deficient strains 9Δ-10Δ: - spiking with Fc-Fusion (*)  24-well cultivation of protease deficient strains in standard production medium at 35°C, day 4 supernatants  Fc-Fusion reference, ProA purified, 25ng/µl in spiking reactions at 35°C  Time points 0h, 1h, 3h, o/n and o/2n  Detection with Fc-antibody (red) and Fused protein antibody (green) -> combined signal is yellow  Fc-Fusion stays intact in all supernatants, especially in the one from 10Δ Prot. D strain  Different FC-Fusion molecule than in slide 28 DYADIC CONFIDENTIAL INFORMATION
  • 23. DYADIC INFORMATION 23 Success In Bispecific Expression In a few months work we have been able to express a bispecific antibody using C1 and provide sufficient quantities of this antibody to our collaborator which they were not able to do previously using other expression systems after two years of work. Purified samples of bispecific protein
  • 24. 24 Blue – C1-produced bispecific Red – CHO-produced bispecific Bispecific produced in C1 and CHO have identical/similar activity • C1- and CHO-produced bispecifics were assayed in an in vitro cellular activity assay • The dose response curves are very similar • No negative effects of the C1-derived potential impurities in cellular assays DYADIC CONFIDENTIAL INFORMATION
  • 25. 25 Success in Expressing High Level of ZAPI Antigen The New strain using SES promoter system significantly increased the production and stability of the target antigen when 723 mg/L was reached in 94 hrs.  SES construct was transformed in two 8x protease deletion strains transformants were cultivated in 24-well MTP with the addition of protease inhibitors.  SES clones with several fold increase in production (compared to bgl) were identified DYADIC INFORMATION
  • 26. DYADIC INFORMATION 26 Ch-VLP Platform Technology Basis VP2 protein is a structural protein of the Infectious Bursitis virus (IBDV; Gumboro) what naturally auto assemble forming Virus Like Particles Translation Assembling process x60 VLPs VP2 protein VP2 gene (+34) 983 54 85 63 info@bdibiotech.com C/ Louis Proust, 13 47151 Boecillo (Valladolid) - Spain
  • 27. DYADIC INFORMATION 27 Success in expressing secreted VLP by C1 VLP is expressed into DNL121 under bgl promoter.  Productivity reaches 300mg/L  Intracellular remains around 70mg/L Extracelular-VLP Intracelular-VLP
  • 28. DYADIC INFORMATION 28 Visualization of VLPs Produced by C1 Intracellular and extracellular fractions of SP-VLP have been visualized by Transmission Electronic Microscopy (TEM)  Extracellular VLPs produced by C1 are perfectly conformed. The structure is homogeneous in size and aspect.  The production level of the extracellular VLP produced by C1 was 300 mg/L.  The production level of the intracellular remained VLP produced by C1 was 70 mg/L  In comparison, extracellular fraction couldn’t be produced by S. cerevisiae.  Intracellular VLP produced by S. cerevisiae reached a level of 70 mg/L VLP produced by C1 Control Extracellular fraction Intracellular fraction S. cerevisiae 300mg/L (112,5H) 70mg/L (112,5H) 70mg/L
  • 29. DYADIC INFORMATION 29 The Expression of Recombinant HAs by C1 Expression and performance of 5 different HA’s Influenza strain Expression Functional HA New Caledonia, A (H1N1) Yes Yes Texas, A (H1N1) Yes Yes Puerto Rico A (H1N1) Yes Yes California, A (H1N1) Yes Yes Florida B Yes Yes Agglutination test• Expressed as a membrane-bound trimer • Titers variable
  • 30. DYADIC INFORMATION 30 Immunogenicity Study of HA/NC Produced by C1 HA/New Caledonia  The full length recombinant HA produced in C1 did not induce any negative clinical signs in mice. • No weight loss. • No negative clinical signs during the experiment (visual observations taken each day).  The full length of HA/New Caledonia produced in C1 showed excellent immunogenic properties in mice better than the control of HA/New Caledonia produced by Baculovirus.  C1 can potentially produce levels of 1 g/L of HAs and other antigens in 5 days fermentation therefore: • In seasonal Influenza Vaccine—total doses distributed = 146M/year • Each 0.5 mL dose is formulated to contain: 15 µg of HA for each strain. • Thus, 3 X 1000L scale fermentation runs will be able to supply the annual global HA/strain needs against Influenza of 2,175 g.
  • 31. DYADIC INFORMATION 31 Metabolic modeling and Proteomic Analysis for Next Stage of Strain Engineering Based on C1 genomic sequence, CoReCo platform for metabolic model reconstruction was used to build a genome-scale metabolic model of C1 for further strain development work CoReCo: Esa Pitkänen et al. 2014 Plos Comput Biol. Sandra Castillo et al. 2016 Biotechnol Biofuels.
  • 32. DYADIC INFORMATION 32 Summary Shorter development & production cycles Higher protein yields Lower CapEx/OpEx Higher purity & greater protein recovered Low Cost Media / No Viral Inactivation No negative clinical signs in mice studies R&D Collaborations Licensing Arrangements Other Commercial Opportunities Dyadic is looking for partners in the biopharmaceutical space to exploit the potential of C1. Contact mjones@dyadic.com
  • 33. Thank You October 2018 Reinventing biological vaccine and drug development & production