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SHANE 
BURGESS 
PHD 
VICE 
PROVOST 
AND 
DEAN 
COLLEGE 
OF 
AGRICULTURE 
AND 
LIFE 
SCIENCES 
(CALS) 
THE 
UNIVERSITY 
OF ...
Cyber-­‐Infrastructure: 
Essen<al 
for 
producing 
the 
animals 
we 
need 
in 
the 
21st 
Century 
Dr. 
Shane 
C. 
Burgess...
Global 
animal 
protein 
consump<on 
% 
animal 
protein 
of 
total 
consumed 
The 
world’s 
increasing 
middle 
class 
Gro...
FAO 
Link: 
hdp://www.fao.org/economic/esa/ 
esag/en/ 
Image: 
hdp://www.sensibletable.com/feeding-­‐9-­‐billion.aspx#food...
15 
10 
5 
0 
-­‐5 
Animal-­‐derived 
protein 
improves 
childhood 
cogniMve 
funcMon 
as 
measured 
by 
academic 
perform...
What 
is 
Cyberinfrastructure? 
Connecting Scientists and Computation! 
• Data hardware, 
• Integrate! 
Management ! 
• Co...
Big 
Problems... 
2008 
2011
$50M
iPlant 
Layered 
Services 
and 
Access 
End 
Users 
Computational 
Users 
Multi-level 
User 
Access 
Dr. 
Eric 
Lyons, 
UA...
350000 
300000 
250000 
200000 
150000 
100000 
50000 
0 
US 
Corn 
produc<on 
and 
the 
2012 
drought 
1960 
1962 
1964 
...
Data 
monitoring 
is 
essen<al 
in 
scaled-­‐up 
opera<on 
of 
Accordion 
Photobioreactors 
to 
op<mize 
algae 
growth, 
p...
Dr 
Gene 
Giacomelli 
UA 
CALS 
ABE/SPS
"If 
it 
tastes 
good 
you 
should 
sequence 
it, 
you 
should 
know 
what's 
in 
the 
genes 
of 
that 
species.“ 
Species...
iAnimal! 
iPlant Data Store! 
iPlant! 
Computational 
Resources! 
3rd Party! 
Analytical 
Software! 
Dr. 
Eric 
Lyons, 
UA...
$100M
Eritrea 
aerial 
image 
of 
shrimp-­‐Mlapia-­‐ 
seaweed-­‐halophyte 
farm 
Salicornia, 
grown 
for 
fodder 
when 
green, 
...
Dr Shane Burgess, Vice Provost and Dean, College of Agriculture and Life Sciences (CALS), The University of Arizona
Dr Shane Burgess, Vice Provost and Dean, College of Agriculture and Life Sciences (CALS), The University of Arizona
Dr Shane Burgess, Vice Provost and Dean, College of Agriculture and Life Sciences (CALS), The University of Arizona
Dr Shane Burgess, Vice Provost and Dean, College of Agriculture and Life Sciences (CALS), The University of Arizona
Dr Shane Burgess, Vice Provost and Dean, College of Agriculture and Life Sciences (CALS), The University of Arizona
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Dr Shane Burgess, Vice Provost and Dean, College of Agriculture and Life Sciences (CALS), The University of Arizona

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Dr Shane Burgess, Vice Provost and Dean, College of Agriculture and Life Sciences (CALS), The University of Arizona

  1. 1. SHANE BURGESS PHD VICE PROVOST AND DEAN COLLEGE OF AGRICULTURE AND LIFE SCIENCES (CALS) THE UNIVERSITY OF ARIZONA
  2. 2. Cyber-­‐Infrastructure: Essen<al for producing the animals we need in the 21st Century Dr. Shane C. Burgess Vice Provost & Dean, College of Agriculture and Life Sciences; Director, Arizona Agricultural Experiment StaMon. sburgess@cals.arizona.edu
  3. 3. Global animal protein consump<on % animal protein of total consumed The world’s increasing middle class Gross naMonal income per capita in USD Source: Data through 2002, FAO and Word Bank 2009: 1.8B out of 6.8B = 26% 2020: 3.2B out of 7.5B = 43% 2030: 4.9B out of 8.2B= 60%
  4. 4. FAO Link: hdp://www.fao.org/economic/esa/ esag/en/ Image: hdp://www.sensibletable.com/feeding-­‐9-­‐billion.aspx#food-­‐security-­‐defined
  5. 5. 15 10 5 0 -­‐5 Animal-­‐derived protein improves childhood cogniMve funcMon as measured by academic performance. ENGLISH Nutri<onal Supplement % score change compared with control diet MATH ARTS SCIENCE Adapted from Huled, J.L. 2010, UCLA
  6. 6. What is Cyberinfrastructure? Connecting Scientists and Computation! • Data hardware, • Integrate! Management ! • Computing Resources! solware, people • Software! • Data! • Scalable ! • Experimental Verifiability, Reproducibility, and Provenance! • User Identity Management (Collaborative trust)! • Connections Between Resources! • Multiple Access Levels! • Facilitate Collaborations! ! Liberating High-Throughput Data Acquisition! Democratizing ! Supercomputing for Research!
  7. 7. Big Problems... 2008 2011
  8. 8. $50M
  9. 9. iPlant Layered Services and Access End Users Computational Users Multi-level User Access Dr. Eric Lyons, UA CALS, SPS
  10. 10. 350000 300000 250000 200000 150000 100000 50000 0 US Corn produc<on and the 2012 drought 1960 1962 1964 1966 1968 1970 1972 1974 1976 1978 1980 1982 1984 1986 1988 1990 1992 1994 1996 1998 2000 2002 2004 2006 2008 2010 2012
  11. 11. Data monitoring is essen<al in scaled-­‐up opera<on of Accordion Photobioreactors to op<mize algae growth, produc<vity, nutrient replenishments, harvest <me, etc. ConfidenMal Dr. Joel Cuellu. UA CALS ABE
  12. 12. Dr Gene Giacomelli UA CALS ABE/SPS
  13. 13. "If it tastes good you should sequence it, you should know what's in the genes of that species.“ Species that taste good is one criterion. Another ..is ..industrial use -­‐ raising yields…..or benefits for healthcare. BGI chief execuMve, Wang Jun
  14. 14. iAnimal! iPlant Data Store! iPlant! Computational Resources! 3rd Party! Analytical Software! Dr. Eric Lyons, UA CALS, SPS
  15. 15. $100M
  16. 16. Eritrea aerial image of shrimp-­‐Mlapia-­‐ seaweed-­‐halophyte farm Salicornia, grown for fodder when green, or as an oilseed when grown to maturity. Irrigated with the aquaculture effluent from shrimp and Mlapia. Dr. Kevin Fitzsimmons, UA. Coll. Ag& Life Sciences

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