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Anti-microbial agents: which may be natural, semi-synthetic
and synthetic compounds and they are used to kill and inhibit
the growth of microbes.
Cidal: An agent which kill the microbes.
Eg: Bactericidal
Fungicidal
Viricidal
Static: An agent which inhibits the growth of microbes.
Eg: Bacteriostatic
History
• Anti-microbial use is to have been common practice
for at least 2000 years.
• Ancient Egyptians and ancient Greeks used specific
molds and plant extracts to treat infections.
• In 19th century, microbiologists such as Louis Pasteur
and Jules Francois Joubert observed antagonism
between some bacteria and discussed the merits of
controlling these interactions in medicine.
Some of the anti-microbial agents are:
• β-lactams
• Aminoglycosides
• Quinolones
• Macrolide antibiotics
β – lactam antibiotics
I. Penicillin's
a) Narrow spectrum antibiotics
E.g. penicillin G
penicillin V
b) Penicillinase-resistant penicillin's
E.g. Methicillin
Nafcillin
c) Extended- spectrum penicillin's
E.g. Ampicillin
Amoxicillin
In 1928, Alexander Fleming became the first to discover a
natural anti-microbial fungus known as Penicillium
rubens and named extracted substance penicillin which in
1942 was successfully used to treat a streptococcus
infection.
Chemistry
• Penicillins are subsistuted with 6- aminopencillinaic
acids.
• A thiazolidine ring is substituted to beta-lactam ring that
carries a secondary amino group.
• Substituents can be attached to the amino group.
• Structural integrity of the 6-amino penicillanic acid
nucleus is essential for the biologic activity of these
compounds.
Mechanism of action
• Penicillins like β- lactam antibiotics, inhibit bacterial
growth by interfering with specific step in bacterial
cell wall synthesis.
• Cell wall maintains the shape of the cell and prevent
cell lysis that would occur as a result of the high
osmotic pressure in the cell.
• Cell wall is composed of a complex cross polymers,
peptidoglycan consisting of polysaccharides and
polypeptides.
• The polysaccharide contains altering amino-sugars,
N-acetyl-glucosamine and N- acetyl-muramic acid.
• A 5-aminoacid peptide is linked to the N-
acetylmuramic acid sugar. This peptide terminates in
D-alanyl-D-alanine.
• β- lactam antibiotics are structural analogues of the
natural D-alanyl-D-alanine substrate and they are
covalently bound by Pencillin Bound Proteins (PBPs)
at the active site.
• PBPs catalyze the transpeptidase reaction that
removes the terminal alanine to form a cross link with
a nearby peptide, which gives cell wall and its
structural rigidity.
• After a β-lactam antibiotic has attached to the PBP,
the transpeptidation reaction is inhibited,
peptidoglycan synthesis is blocked, and the cell dies.
Adverse effects
• Hypersensitivity reactions
• Severe Hypotension
• Jarisch-Herxheimer reaction
• Diarrhoea
• Congestive cardiac failure
Cephalosporins
• First generation
E.g Cephalexin
Cephradine
Cefadroxil
• Second generation
E.g. Cefuroxime
Cefotiam
• Third generation
E.g. Ceftibuten
Cefexime
• Fourth generation
E.g. Cefclidine
• Cephlosporins are similar to penicillins chemically, in
mechanism of their action and in adverse effects.
• Except the first generation drugs, rest are most
resistant to β-lactamase degradation and therefore
have a broader sprectum of activity against gram-
negative bacteria compared to penicillins.
Mechanism of action
• Cephalosporin's inhibit the transpeptidation process
leading to the formation of imperfect cell wall.
• Osmotic drive from outside isotonic environment of
the host to the inside of the hypertonic bacterial
cytoplasm and finally activation of the autolysin
enzyme leading to the lysis of bacteria.
• Hence the cephalosporin's are also bactericidal drugs.
Adverse effects
• Hypersensitivity
• Gastrointestinal disturbances
• Nephrotoxicity
• Severe bleding
Carbapenems
E.g. Imipenem
• Carbapenems, acts by inhibiting bacterial cell wall
synthesis and produces bactericidal activity.
• It has a wide spectrum of anti-bacterial activity
against gram +ve organisms like
streptococci,staphylococci,enterococci.
• Gram –ve organisms like P.aeruginosa and entero
bacteriaceae.
Intravenous imipenem
via glomerular filteration
in renal tubule
cilastatin - dehyropeptidase
Rapid hydrolysis of imipenem
Excerted in urine
Monobactams
E.g. Aztreonam
• Monobactams acts by inhibiting the bacterial cell wall
synthesis.
• It is effective only against gram –ve bacteria, such as
Enterobacteriaceae, P. aeruginosa, gonococci but has
no activity against gram +ve bacteria and anaerobes.
Resistance
Resistance to penicillins and other beta-lactams
are due to four general mechanisms.
I. Inactivation of antibiotic by beta-lactamase.
II. Modification of target PBPs.
III. Impaired penetration of drug to target PBPs.
IV. Presence of an efflux pump.
Inactivation of antibiotic by beta-lactamase.
• Beta-lactamase production is most common
mechanism of resistance.
• More than 100 different beta-lactamases have been
identified.
• Some of them are produced by staphylococcus
aureus, haemophilus species and E.coli are relatively
narrow in substrate specificity and will hydrolyse
penicillins but not cephalosporins.
• Some other beta-lactamases are produced by
Pseudomonas aeruginosa and Enterobacter species
are much broader in spetrum and will hydrolyse both
cephalosporins and penicillins.
• Carbapenems, which are highly resistant to
hydrolysis by penicillinases and cephalosporinases
are hydyolysed by metallo beta-lactamase.
Modification of target PBPs
• Altreation in target PBPs (penicillin bound proteins)
is responsible for methicillin resistance and penicillin
resistance in pneumococci.
• These resistant organisms produce PBPs that have
low affinity for binding beta-lactam antibiotics, and
as a result they are not inhibited except at relative
high drug concentrations.
Impaired penetration of drug to target PBPs
• Resistance caused by impaired penetration of
antibiotics to target PBPs, which occurs only in gram
–ve species, is due to impermeability of the outer
membrane that is present in gram –ve bacteria not in
gram +ve bacteria.
• Beta-lactam antibiotics cross the outer membrane and
enter gram –ve organisms via outer membrane protein
channels.
• Absence of the proper channel or down regulation of
its production can prevent or greatly reduce drug
entry into the cell.
Presence of an efflux pump
• Gram –ve organisms also may produce an efflux
pump, which consists of cytoplasmic and periplasmic
protein components, that efficiently transport some
beta-lactam antibiotics from the periplasm back
across the outer membrane.
E.g. Extrusion of nafcillin by salmonella typhimurium.
Aminoglycosides
Drugs
Streptomycin
Gentamicin
Tobramycin
Amikacin
Kanamycin
Sisomicin
Neomycin
Mechanism of action
Aminoglycosides are bactericidal agents- inhibit
protein synthesis.
Entry of aminiglycosides into bacterial cell
Bind to 30s ribosomal subunit
Inhibit initiation of Cause misreading of
Protein synthesis codon
cause misreading of codon
Premature termination of Insertion of wrong amino
Protein synthesis acid into the growing
peptide chain
Formation of defective proteins
Incorporation of defective proteins into bacterial cell
membrane
Altered permeability and distruption of cell membrane
Resistance
Bacterial resistance to aminoglycosides is due to
I. Inactivation of the drug by bacterial enzymes
The microorganism produces a transferase
enzyme or enzymes that inactivate the
aminoglycoside by adenylation, acetylation or
phosparylation.
II. Decreased entry of drug into bacterial cell
Impaired entry of aminoglycoside into the cell.
This may be genotypic; i.e, resulting from mutation
or deletion of a porin protein or proteins involved in
transport and maintainance of the electrochemical
gradient.
III. Decreased affinity of the drug for the ribosomes.
The receptor protein on the 30s ribosomal
subunit may be deleted or altered as a result of a
mutation.
Adverse effects
• Ototoxicity
• Nephrotoxicity
• Neuromuscular blocking effect
• Hypersensitivity reactions
Quinolones
• The first quinolone, naldixic acid, is a urinary
antiseptic.
• It is effective against garam –ve bacteria including
E.coli, Proteus, Klebsiella, Enterobacter, Salmonella,
Shigella, but not Pseudomonas.
• Nalidixic acid inhibits DNA gyrase enzyme and
interferes with the replication of bacterial DNA.
• It is useful in the treatment of uncomplicated UTI due
to gram –ve bacteria and diarrhoea due to shigella or
salmonella.
Mechanism of action
DNA gyrase (topoisomerase II) Topoisomerase IV in
in gram –ve bacteria gram +ve bacteria
Nicking, formation of –ve Nicking and seperation
Supercoils and resealing of of daughter DNA strands
Strands of DNA following DNA
replication
Resistance
• During fluroquinolone therapy, resistant organisms
emerged especially among Staphylococci,
pseudomonas and serratia.
• Resistance is due to 1 or more point mutations in the
quinolone binding region of the target enzyme or to
change in the permeability of the organism.
• DNAgyrase is the primary target in E.coli with the
single step mutants exhibiting amino acid substitution
in the A subunit of gyrase.
• Topoisomerase IV is a secondary target in E.coli that
is altered in mutants expressing higher levels of
resistance.
Adverse effects
• Hemolytic anemia
• Mild CNS disturbances
• Mild GIT distrubances
Macrolide antibiotics
• Erythromycin was obtained by Streptomyces
erythreus.
• Erythromycin was active against S. pneumonia, S.
pyogenes.
• Roxithromycin, clarithromycin and azithromycin are
the semisynthetic macrolides.
Mechanism of action
• Macrolides inhibit the protein synthesis by binding
reversibly to the P-site of the 50s ribosomal subunit
of the bacteria.
• Precisely, these drugs inhibit the translocation step
where in t-RNA with its growing peptide chain is
translocated from the A- site to P- site.
• As a result, the ribosome cannot move on one codon
furthur towards right, relative to m-RNA.
• In otherwords, the A site does not become free to
accept the next incoming t-RNA charged with desired
aminoacid.
• The protein synthesis thus stops.
Resistance
Resistance to macrolides is usually plasmid
encoded.
Three mechanisms have been identified.
i. Reduced permealibity of the cell membrane or
active efflux.
ii. Production of esterases that hydrolyze the
macrolides.
iii. Modification of the ribosomal binding site by
chromosomal mutation or by a macrolide-
induciable or a constitutive methylase.
• Efflux and methylase production account for the vast
majority of cases of resistance in gram –ve organism.
• Cross- resistance is complete between erythromycin
and the other macrolides.
• Constitutive methylase production also confers
resistance to structurally unrelated but
mechanistically similar compounds such as,
clindamycin and streptogram B would share the same
ribosomal binding site.
• Because non- macrolides are poor inducers of the
methylase, strains expressing an induciable methylase
will appear susceptible invitro.
• However, constitutive mutants that are resistant can
be selected out and emerge during therapy with
clindamycin.
Adverse effects
• Gastro-intestinal effects
• Liver toxicity
• Drug-Interactions
Erythromycin increases serum concentrations of oral
digoxin by increasing its bioavaliability.
References
• G. katzung 8th edition
• Sharma and sharma
• K.D Tripathi 8th edition
Anti-microbial Agents: Types, Mechanisms and Resistance

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Anti-microbial Agents: Types, Mechanisms and Resistance

  • 1.
  • 2. Anti-microbial agents: which may be natural, semi-synthetic and synthetic compounds and they are used to kill and inhibit the growth of microbes. Cidal: An agent which kill the microbes. Eg: Bactericidal Fungicidal Viricidal Static: An agent which inhibits the growth of microbes. Eg: Bacteriostatic
  • 3. History • Anti-microbial use is to have been common practice for at least 2000 years. • Ancient Egyptians and ancient Greeks used specific molds and plant extracts to treat infections. • In 19th century, microbiologists such as Louis Pasteur and Jules Francois Joubert observed antagonism between some bacteria and discussed the merits of controlling these interactions in medicine.
  • 4. Some of the anti-microbial agents are: • β-lactams • Aminoglycosides • Quinolones • Macrolide antibiotics
  • 5. β – lactam antibiotics I. Penicillin's a) Narrow spectrum antibiotics E.g. penicillin G penicillin V b) Penicillinase-resistant penicillin's E.g. Methicillin Nafcillin c) Extended- spectrum penicillin's E.g. Ampicillin Amoxicillin
  • 6. In 1928, Alexander Fleming became the first to discover a natural anti-microbial fungus known as Penicillium rubens and named extracted substance penicillin which in 1942 was successfully used to treat a streptococcus infection. Chemistry • Penicillins are subsistuted with 6- aminopencillinaic acids. • A thiazolidine ring is substituted to beta-lactam ring that carries a secondary amino group. • Substituents can be attached to the amino group. • Structural integrity of the 6-amino penicillanic acid nucleus is essential for the biologic activity of these compounds.
  • 7.
  • 8. Mechanism of action • Penicillins like β- lactam antibiotics, inhibit bacterial growth by interfering with specific step in bacterial cell wall synthesis. • Cell wall maintains the shape of the cell and prevent cell lysis that would occur as a result of the high osmotic pressure in the cell.
  • 9.
  • 10. • Cell wall is composed of a complex cross polymers, peptidoglycan consisting of polysaccharides and polypeptides. • The polysaccharide contains altering amino-sugars, N-acetyl-glucosamine and N- acetyl-muramic acid. • A 5-aminoacid peptide is linked to the N- acetylmuramic acid sugar. This peptide terminates in D-alanyl-D-alanine. • β- lactam antibiotics are structural analogues of the natural D-alanyl-D-alanine substrate and they are covalently bound by Pencillin Bound Proteins (PBPs) at the active site.
  • 11. • PBPs catalyze the transpeptidase reaction that removes the terminal alanine to form a cross link with a nearby peptide, which gives cell wall and its structural rigidity. • After a β-lactam antibiotic has attached to the PBP, the transpeptidation reaction is inhibited, peptidoglycan synthesis is blocked, and the cell dies.
  • 12. Adverse effects • Hypersensitivity reactions • Severe Hypotension • Jarisch-Herxheimer reaction • Diarrhoea • Congestive cardiac failure
  • 13. Cephalosporins • First generation E.g Cephalexin Cephradine Cefadroxil • Second generation E.g. Cefuroxime Cefotiam • Third generation E.g. Ceftibuten Cefexime • Fourth generation E.g. Cefclidine
  • 14. • Cephlosporins are similar to penicillins chemically, in mechanism of their action and in adverse effects. • Except the first generation drugs, rest are most resistant to β-lactamase degradation and therefore have a broader sprectum of activity against gram- negative bacteria compared to penicillins.
  • 15. Mechanism of action • Cephalosporin's inhibit the transpeptidation process leading to the formation of imperfect cell wall. • Osmotic drive from outside isotonic environment of the host to the inside of the hypertonic bacterial cytoplasm and finally activation of the autolysin enzyme leading to the lysis of bacteria. • Hence the cephalosporin's are also bactericidal drugs.
  • 16. Adverse effects • Hypersensitivity • Gastrointestinal disturbances • Nephrotoxicity • Severe bleding
  • 17. Carbapenems E.g. Imipenem • Carbapenems, acts by inhibiting bacterial cell wall synthesis and produces bactericidal activity. • It has a wide spectrum of anti-bacterial activity against gram +ve organisms like streptococci,staphylococci,enterococci. • Gram –ve organisms like P.aeruginosa and entero bacteriaceae.
  • 18. Intravenous imipenem via glomerular filteration in renal tubule cilastatin - dehyropeptidase Rapid hydrolysis of imipenem Excerted in urine
  • 19. Monobactams E.g. Aztreonam • Monobactams acts by inhibiting the bacterial cell wall synthesis. • It is effective only against gram –ve bacteria, such as Enterobacteriaceae, P. aeruginosa, gonococci but has no activity against gram +ve bacteria and anaerobes.
  • 20. Resistance Resistance to penicillins and other beta-lactams are due to four general mechanisms. I. Inactivation of antibiotic by beta-lactamase. II. Modification of target PBPs. III. Impaired penetration of drug to target PBPs. IV. Presence of an efflux pump. Inactivation of antibiotic by beta-lactamase. • Beta-lactamase production is most common mechanism of resistance.
  • 21. • More than 100 different beta-lactamases have been identified. • Some of them are produced by staphylococcus aureus, haemophilus species and E.coli are relatively narrow in substrate specificity and will hydrolyse penicillins but not cephalosporins. • Some other beta-lactamases are produced by Pseudomonas aeruginosa and Enterobacter species are much broader in spetrum and will hydrolyse both cephalosporins and penicillins. • Carbapenems, which are highly resistant to hydrolysis by penicillinases and cephalosporinases are hydyolysed by metallo beta-lactamase.
  • 22. Modification of target PBPs • Altreation in target PBPs (penicillin bound proteins) is responsible for methicillin resistance and penicillin resistance in pneumococci. • These resistant organisms produce PBPs that have low affinity for binding beta-lactam antibiotics, and as a result they are not inhibited except at relative high drug concentrations.
  • 23. Impaired penetration of drug to target PBPs • Resistance caused by impaired penetration of antibiotics to target PBPs, which occurs only in gram –ve species, is due to impermeability of the outer membrane that is present in gram –ve bacteria not in gram +ve bacteria. • Beta-lactam antibiotics cross the outer membrane and enter gram –ve organisms via outer membrane protein channels. • Absence of the proper channel or down regulation of its production can prevent or greatly reduce drug entry into the cell.
  • 24. Presence of an efflux pump • Gram –ve organisms also may produce an efflux pump, which consists of cytoplasmic and periplasmic protein components, that efficiently transport some beta-lactam antibiotics from the periplasm back across the outer membrane. E.g. Extrusion of nafcillin by salmonella typhimurium.
  • 26.
  • 27. Mechanism of action Aminoglycosides are bactericidal agents- inhibit protein synthesis. Entry of aminiglycosides into bacterial cell Bind to 30s ribosomal subunit Inhibit initiation of Cause misreading of Protein synthesis codon
  • 28. cause misreading of codon Premature termination of Insertion of wrong amino Protein synthesis acid into the growing peptide chain Formation of defective proteins Incorporation of defective proteins into bacterial cell membrane Altered permeability and distruption of cell membrane
  • 29. Resistance Bacterial resistance to aminoglycosides is due to I. Inactivation of the drug by bacterial enzymes The microorganism produces a transferase enzyme or enzymes that inactivate the aminoglycoside by adenylation, acetylation or phosparylation. II. Decreased entry of drug into bacterial cell Impaired entry of aminoglycoside into the cell. This may be genotypic; i.e, resulting from mutation or deletion of a porin protein or proteins involved in transport and maintainance of the electrochemical gradient.
  • 30. III. Decreased affinity of the drug for the ribosomes. The receptor protein on the 30s ribosomal subunit may be deleted or altered as a result of a mutation. Adverse effects • Ototoxicity • Nephrotoxicity • Neuromuscular blocking effect • Hypersensitivity reactions
  • 31. Quinolones • The first quinolone, naldixic acid, is a urinary antiseptic. • It is effective against garam –ve bacteria including E.coli, Proteus, Klebsiella, Enterobacter, Salmonella, Shigella, but not Pseudomonas. • Nalidixic acid inhibits DNA gyrase enzyme and interferes with the replication of bacterial DNA. • It is useful in the treatment of uncomplicated UTI due to gram –ve bacteria and diarrhoea due to shigella or salmonella.
  • 32.
  • 33. Mechanism of action DNA gyrase (topoisomerase II) Topoisomerase IV in in gram –ve bacteria gram +ve bacteria Nicking, formation of –ve Nicking and seperation Supercoils and resealing of of daughter DNA strands Strands of DNA following DNA replication
  • 34. Resistance • During fluroquinolone therapy, resistant organisms emerged especially among Staphylococci, pseudomonas and serratia. • Resistance is due to 1 or more point mutations in the quinolone binding region of the target enzyme or to change in the permeability of the organism. • DNAgyrase is the primary target in E.coli with the single step mutants exhibiting amino acid substitution in the A subunit of gyrase. • Topoisomerase IV is a secondary target in E.coli that is altered in mutants expressing higher levels of resistance.
  • 35. Adverse effects • Hemolytic anemia • Mild CNS disturbances • Mild GIT distrubances
  • 36. Macrolide antibiotics • Erythromycin was obtained by Streptomyces erythreus. • Erythromycin was active against S. pneumonia, S. pyogenes. • Roxithromycin, clarithromycin and azithromycin are the semisynthetic macrolides. Mechanism of action • Macrolides inhibit the protein synthesis by binding reversibly to the P-site of the 50s ribosomal subunit of the bacteria.
  • 37.
  • 38. • Precisely, these drugs inhibit the translocation step where in t-RNA with its growing peptide chain is translocated from the A- site to P- site. • As a result, the ribosome cannot move on one codon furthur towards right, relative to m-RNA. • In otherwords, the A site does not become free to accept the next incoming t-RNA charged with desired aminoacid. • The protein synthesis thus stops.
  • 39. Resistance Resistance to macrolides is usually plasmid encoded. Three mechanisms have been identified. i. Reduced permealibity of the cell membrane or active efflux. ii. Production of esterases that hydrolyze the macrolides. iii. Modification of the ribosomal binding site by chromosomal mutation or by a macrolide- induciable or a constitutive methylase.
  • 40. • Efflux and methylase production account for the vast majority of cases of resistance in gram –ve organism. • Cross- resistance is complete between erythromycin and the other macrolides. • Constitutive methylase production also confers resistance to structurally unrelated but mechanistically similar compounds such as, clindamycin and streptogram B would share the same ribosomal binding site. • Because non- macrolides are poor inducers of the methylase, strains expressing an induciable methylase will appear susceptible invitro.
  • 41. • However, constitutive mutants that are resistant can be selected out and emerge during therapy with clindamycin. Adverse effects • Gastro-intestinal effects • Liver toxicity • Drug-Interactions Erythromycin increases serum concentrations of oral digoxin by increasing its bioavaliability.
  • 42. References • G. katzung 8th edition • Sharma and sharma • K.D Tripathi 8th edition