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Support for research data management
Esther Dzalé Yeumo 21 September 2015
.02
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015
Agenda
 Introduction
 What data do we produce at INRA
 Current data management and sharing practices and pain points: the point of
view of some researchers
 The service offer under construction
.03
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015
2009: political awarness of Inra CEO
 2012: Report* of Inra scientific council « data management
and sharing »
 9 recommendations, 1st : define Inra Policy
 2013: Inra data sharing policy
 11 data management and sharing principles
 Implementation
 Domain specific working groups  inventory, requirements
 Trans-disciplinary working groups  state of the art (legal/IP,
technical, social issues), proposals
Some key dates
Introduction
*Gaspin, C., Pontier, D., Colinet, L., Dardel, F., Franc, A., Hologne, O., Le Gall, O., Maurin, N., Perrière, G., Pichot, C., Rodolphe, F. (2012).
Rapport du groupe de travail sur la gestion et le partage des données http://prodinra.inra.fr/record/206746
What data?
.05
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015
Current data sharing practices: the point of view of some
scientists
E. Dzalé Yeumo, O. Hologne
16/juillet/2015
Genetic &
genomic
- In general, data is released
once the producers have
published a paper
- Many data sharing
platforms exist at the
national and international
level
- Many metadata and data
format standards exist
- Lots of data is produced in
collaboration with public and
private partners
Experimentation,
observation and
simulation
- Raw data may be of as
interest as processed data
- Data sharing rules depends
on the nature, granularity,
and origin of the data
- The importance of
metadata is of paramount
for the reusability of the
released data
- Lots of data is unique, and
can be captured only once
Social sciences
- A few data sharing
platforms exist at the
national and international
level
- Lots of data are are bought
and can’t be freely released
- Experimental economics
data can be freely released
most of the time
- Data documentation and
statistical disclosure are of
paramount importance
- The importance of the
longitudinal aspect (range or
historical aspect) of the data
increases the need for their
long term preservation
Practices
.06
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015
Current data management pain points: the point of view of some
scientists
E. Dzalé Yeumo, O. Hologne
16/juillet/2015
Genetic &
genomic
- Data is more and more
massive  economical
model for long term
hosting
- Exchange, transfer and
storage of large datasets
- Lack of human resources
- Gaps in semantic
coverage
- Many existing public data
repositories are congested
with important waiting
time for the deposit of
datasets
- Risk of conferring an
economic advantage to
our competitors or to our
partners competitors
Experimentation,
observation and
simulation
- Data standardization
- Exchange, transfer and
storage of large datasets
- Capturing metadata
automatically
- Gaps in semantic
coverage
- Metadata may be
strategic (e.g protocols,
methods)
- Some metadata or data
are sensitive (geographic
information about
epidemiologic data or
GMO data)
- Exchange of large
datasets
Social sciences
- Data archiving:
sustainability of the
existing platforms
- Statistical disclosure
control
- Lots of personal and
sensitive data (social and
economical survey data)
 risk of re-identification
- Legal and intellectual
property issues are of
paramount importance
(ex: data inferred from
existing textual data
through decision tools,
data purchased from third
parties)
Pain points
.07
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015
What service offer to support the data management
and sharing?
.08
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015
The scientists whish list
E. Dzalé Yeumo, O. Hologne
16/juillet/2015
Genetic &
genomic
- Provide templates for consortium
agreements + identify special cases
(biological material, long tradition of
partnership, etc.)
- A data portal with access to all the
data shared by INRA
- DOIs
- Metadata training
- Volunteering for species-related data
repositories at an international level
Experimentation,
observation and
simulation
- Recognition of all the contributors
- Recognition of data sharing as first
class skill at the institutional level
- Data papers training
- A data portal with access to all the
data shared by INRA
- Harmonization of metadata standards
and vocabularies
Social sciences
- Guidance with regards to publishing
derived data: when, how?
- Webscrapping data of interest which
may be removed from original sources
- DOIs
- A secured data platform that allows
reviewers to access data and
reproduce findings with respect to
legal and IP requirements.
- Thematic active data management
platforms
Legal, IP , social
Technics,
methods, tools
.09
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015
Awareness, guidance, training
A digital repository
 Base on the IT environment provided by the IT department:
 Two data centers
 The Netapp Storage Virtual Machine technology
 Outsource the long term preservation
 Leverage the many existing data repositories
 Upgrade the existing repositories up to trusted repositories in accordance with the Data
Seal of Approval and the defra assessement grids:
http://www.datasealofapproval.org/en/assessment/ and
https://defradigital.blog.gov.uk/2015/02/09/are-you-a-mature-open-data-publisher/
 Conform to the OAIS reference model
 Cover both active and historical data
Additional services
DOI MINTING SERVICE VOCABULARIES PUBLISHING SERVICE
Training
 Technical school in data papers
 Technical school in Linked Data and how to publish data according to
Linked Data principles
.013
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015
Thank you!
.014
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015
Appendix: 11 data sharing and management principles
.015
E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015

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Support for Research Data Management, by Esther Dzalé Yeumo Kaboré

  • 1. Support for research data management Esther Dzalé Yeumo 21 September 2015
  • 2. .02 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015 Agenda  Introduction  What data do we produce at INRA  Current data management and sharing practices and pain points: the point of view of some researchers  The service offer under construction
  • 3. .03 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015 2009: political awarness of Inra CEO  2012: Report* of Inra scientific council « data management and sharing »  9 recommendations, 1st : define Inra Policy  2013: Inra data sharing policy  11 data management and sharing principles  Implementation  Domain specific working groups  inventory, requirements  Trans-disciplinary working groups  state of the art (legal/IP, technical, social issues), proposals Some key dates Introduction *Gaspin, C., Pontier, D., Colinet, L., Dardel, F., Franc, A., Hologne, O., Le Gall, O., Maurin, N., Perrière, G., Pichot, C., Rodolphe, F. (2012). Rapport du groupe de travail sur la gestion et le partage des données http://prodinra.inra.fr/record/206746
  • 5. .05 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015 Current data sharing practices: the point of view of some scientists E. Dzalé Yeumo, O. Hologne 16/juillet/2015 Genetic & genomic - In general, data is released once the producers have published a paper - Many data sharing platforms exist at the national and international level - Many metadata and data format standards exist - Lots of data is produced in collaboration with public and private partners Experimentation, observation and simulation - Raw data may be of as interest as processed data - Data sharing rules depends on the nature, granularity, and origin of the data - The importance of metadata is of paramount for the reusability of the released data - Lots of data is unique, and can be captured only once Social sciences - A few data sharing platforms exist at the national and international level - Lots of data are are bought and can’t be freely released - Experimental economics data can be freely released most of the time - Data documentation and statistical disclosure are of paramount importance - The importance of the longitudinal aspect (range or historical aspect) of the data increases the need for their long term preservation Practices
  • 6. .06 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015 Current data management pain points: the point of view of some scientists E. Dzalé Yeumo, O. Hologne 16/juillet/2015 Genetic & genomic - Data is more and more massive  economical model for long term hosting - Exchange, transfer and storage of large datasets - Lack of human resources - Gaps in semantic coverage - Many existing public data repositories are congested with important waiting time for the deposit of datasets - Risk of conferring an economic advantage to our competitors or to our partners competitors Experimentation, observation and simulation - Data standardization - Exchange, transfer and storage of large datasets - Capturing metadata automatically - Gaps in semantic coverage - Metadata may be strategic (e.g protocols, methods) - Some metadata or data are sensitive (geographic information about epidemiologic data or GMO data) - Exchange of large datasets Social sciences - Data archiving: sustainability of the existing platforms - Statistical disclosure control - Lots of personal and sensitive data (social and economical survey data)  risk of re-identification - Legal and intellectual property issues are of paramount importance (ex: data inferred from existing textual data through decision tools, data purchased from third parties) Pain points
  • 7. .07 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015 What service offer to support the data management and sharing?
  • 8. .08 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015 The scientists whish list E. Dzalé Yeumo, O. Hologne 16/juillet/2015 Genetic & genomic - Provide templates for consortium agreements + identify special cases (biological material, long tradition of partnership, etc.) - A data portal with access to all the data shared by INRA - DOIs - Metadata training - Volunteering for species-related data repositories at an international level Experimentation, observation and simulation - Recognition of all the contributors - Recognition of data sharing as first class skill at the institutional level - Data papers training - A data portal with access to all the data shared by INRA - Harmonization of metadata standards and vocabularies Social sciences - Guidance with regards to publishing derived data: when, how? - Webscrapping data of interest which may be removed from original sources - DOIs - A secured data platform that allows reviewers to access data and reproduce findings with respect to legal and IP requirements. - Thematic active data management platforms Legal, IP , social Technics, methods, tools
  • 9. .09 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015 Awareness, guidance, training
  • 10. A digital repository  Base on the IT environment provided by the IT department:  Two data centers  The Netapp Storage Virtual Machine technology  Outsource the long term preservation  Leverage the many existing data repositories  Upgrade the existing repositories up to trusted repositories in accordance with the Data Seal of Approval and the defra assessement grids: http://www.datasealofapproval.org/en/assessment/ and https://defradigital.blog.gov.uk/2015/02/09/are-you-a-mature-open-data-publisher/  Conform to the OAIS reference model  Cover both active and historical data
  • 11. Additional services DOI MINTING SERVICE VOCABULARIES PUBLISHING SERVICE
  • 12. Training  Technical school in data papers  Technical school in Linked Data and how to publish data according to Linked Data principles
  • 13. .013 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015 Thank you!
  • 14. .014 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015 Appendix: 11 data sharing and management principles
  • 15. .015 E. Dzalé Yeumo/ IG Agriculture meeting 21 September 2015