150712 antabif data_publication_lsssg
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Presentation given at the Standing Groups meeting at the SCAR Open Science Conference. This presentation focuses on a facet of the ANTABIF architecture, the GBIF Integrated Publishing Toolkit

Presentation given at the Standing Groups meeting at the SCAR Open Science Conference. This presentation focuses on a facet of the ANTABIF architecture, the GBIF Integrated Publishing Toolkit

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  • 1. Data publication Bruno Danis - LSSSG 2012Sunday 15 July 12
  • 2. Our vision: Antarctic biodiversity data are open, linked, useful, interoperable and safe. Parsons et al. 2011Sunday 15 July 12
  • 3. biodiversity.aqSunday 15 July 12
  • 4. biodiversity.aq • www.biodiversity.aqSunday 15 July 12
  • 5. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aqSunday 15 July 12
  • 6. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aqSunday 15 July 12
  • 7. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aqSunday 15 July 12
  • 8. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aqSunday 15 July 12
  • 9. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aqSunday 15 July 12
  • 10. biodiversity.aq Promote)the)communit • www.biodiversity.aq MODULAR development)of)N ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSunday 15 July 12
  • 11. biodiversity.aq Nodes)Investment)in)new)func@onality) Promote)the)communit • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSunday 15 July 12
  • 12. biodiversity.aq Nodes)Investment)in)new)func@onality) Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSunday 15 July 12
  • 13. biodiversity.aq Nodes)Investment)in)new)func@onality) NPT)can)be)extended)by)crea@ng)an Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq installing)Modules) MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery Data products A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSunday 15 July 12
  • 14. ipt.biodiversity.aq • Integrated Publishing Toolkit • standardize and clean biodiversity data • manage primary biodiversity data • manage associated metadata • choose collaborators • generate and submit a Data Paper • push data and metadata to Information SystemsSunday 15 July 12
  • 15. ipt.biodiversity.aqSunday 15 July 12
  • 16. ipt. biodiversity.aqSunday 15 July 12
  • 17. ipt. biodiversity.aqSunday 15 July 12
  • 18. ipt. biodiversity.aqSunday 15 July 12
  • 19. ipt. biodiversity.aqSunday 15 July 12
  • 20. Reward data publishing Metadata document Data PaperSunday 15 July 12
  • 21. Proof of conceptSunday 15 July 12
  • 22. Proof of conceptSunday 15 July 12
  • 23. Proof of conceptSunday 15 July 12
  • 24. Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Sunday 15 July 12
  • 25. Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Impact Factor: 0.514 => 0.897 Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Sunday 15 July 12
  • 26. IPT-HighlightsSunday 15 July 12
  • 27. IPT-Highlights • An interface to manage data and metadataSunday 15 July 12
  • 28. IPT-Highlights • An interface to manage data and metadata • Full control over data visibilitySunday 15 July 12
  • 29. IPT-Highlights • An interface to manage data and metadata • Full control over data visibility • Enhanced interoperabilitySunday 15 July 12
  • 30. IPT-Highlights • An interface to manage data and metadata • Full control over data visibility • Enhanced interoperability • Easy data import/standardizationSunday 15 July 12
  • 31. IPT-Highlights • An interface to manage data and metadata • Full control over data visibility • Enhanced interoperability • Easy data import/standardization • Reward = “Data paper”, fast growing IFSunday 15 July 12
  • 32. Thanks and questions? @biodiversityaq image  ©  NY  Times  Sunday 15 July 12