Cytoscape プロジェクト現状報告 2011年2月
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Cytoscapeプロジェクト周辺の現状報告。ナラプロテクノロジーズ様でのユーザーミーティング資料。
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Cytoscape プロジェクト現状報告 2011年2月
- 1. Cytoscape Q&A Keiichiro Ono UC, San Diego Dept. of Medicine National resource for network biology
- 2. • • • Cytoscape 2.x • Cytoscape 3.x • Cytoscape Web • • Q&A
- 4. • • Java • Cytoscape 2.8.1 • Cytoscape 3 Alpha 1 Dev. Release • Web • Cytoscpe Web ver. 0.7.1
- 5. • • NIH P-41 ($6.5 mil.) • National Resource for Network Biology (NRNB) • http://nrnb.org/
- 8. P-41 • • • •
- 11. 2.8.1 • • •
- 12. 3.0.0 Alpha Dev. Release • • •
- 13. Cytoscape Web • Flash • Java Cytoscape • • WEB • JavaScript
- 14. Web • • • • ➡ (XGMML/GraphML)
- 15. 1. <html> 2. <head> </head> 3. <body> 4. 5. <h1>Sample</h1> 6. <div id="cytoWebContent" style="width: 600px;height: 400px;"></div> 7. 8. <script type="text/javascript"> 9. var options = { swfPath: "path/to/swf/CytoscapeWeb", 10. flashInstallerPath: "path/to/swf/playerProductInstall", 11. flashAlternateContent: "Le Flash Player est nécessaire." }; 12. 13. var vis = new org.cytoscapeweb.Visualization("cytoWebContent", options); 14. 15. vis.draw({ network: '<graphml>...</graphml>' }); 16. </script> 17. 18. </body> 19. <html>
- 16. GENEMANIA
- 17. 2: ATTED-II
- 18. • → 2.8.x • → 2.8.x • → 3.x • → 3.x • → Cytoscape Web
- 19. • • OSGi • API • •
- 21. • 3.0 • • • 2.x • Cytoscape Web
- 22. Cytoscape Retreat 2011 • La Jolla, CA USA • •
- 23. Cytoscpae Retreat 2012 Japan (?) • •
- 24. Q&A
- 25. • • • • • Neo4j? •
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