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Cytoscape プロジェクト現状報告 2011年2月
 

Cytoscape プロジェクト現状報告 2011年2月

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Cytoscapeプロジェクト周辺の現状報告。ナラプロテクノロジーズ様でのユーザーミーティング資料。

Cytoscapeプロジェクト周辺の現状報告。ナラプロテクノロジーズ様でのユーザーミーティング資料。

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Cytoscape プロジェクト現状報告 2011年2月 Cytoscape プロジェクト現状報告 2011年2月 Presentation Transcript

  • Cytoscape Q&A Keiichiro Ono UC, San Diego Dept. of MedicineNational resource for network biology
  • • • • Cytoscape 2.x • Cytoscape 3.x • Cytoscape Web•• Q&A
  • • • Java • Cytoscape 2.8.1 • Cytoscape 3 Alpha 1 Dev. Release • Web • Cytoscpe Web ver. 0.7.1
  • • • NIH P-41 ($6.5 mil.) • National Resource for Network Biology (NRNB) • http://nrnb.org/
  • P-41• • • •
  • 2.8.1•••
  • 3.0.0 Alpha Dev. Release•••
  • Cytoscape Web• Flash• Java Cytoscape•• WEB• JavaScript
  • Web• • •• ➡ (XGMML/GraphML)
  • 1. <html>2. <head> </head>3. <body>4.  5. <h1>Sample</h1>6. <div id="cytoWebContent" style="width: 600px;height: 400px;"></div>7.  8. <script type="text/javascript">9.     var options = { swfPath: "path/to/swf/CytoscapeWeb",10.                     flashInstallerPath: "path/to/swf/playerProductInstall",11.                     flashAlternateContent: "Le Flash Player est nécessaire." };12.                     13.     var vis = new org.cytoscapeweb.Visualization("cytoWebContent", options);14.     15.     vis.draw({ network: <graphml>...</graphml> });16. </script>17.  18. </body>19. <html>
  • GENEMANIA
  • 2: ATTED-II
  • • → 2.8.x• → 2.8.x• → 3.x• → 3.x• → Cytoscape Web
  • • • OSGi• API ••
  • • 3.0 • •• 2.x• Cytoscape Web
  • Cytoscape Retreat 2011• La Jolla, CA USA••
  • Cytoscpae Retreat 2012 Japan (?)••
  • Q&A
  • • • • • • Neo4j? •