This document discusses concepts of graphs, nodes, and edges, explaining different types of graphs and their functionalities. It details various graph storage engines like Neo4j and Redis, highlighting their unique features and use cases for managing graph data. Additionally, the document emphasizes the complexity of graph algorithms and recommends using appropriate persistent storage solutions for specific query types.

1. Graphs, Edges &
Nodes
Untangling the social web.

2. What’s a graph?

3. Graph

4. Graph

5. Graph

6. Graph
10
19
9 7
2 15
7
3
12
13
9
6
6
4 3
5 7
4
14
1
4

7. Graph
11 10 10
19
6 9 7
2 15
7 21
3 8
12
15 13 13
17 9
22
6
6
3
4 4 3
2 5 7
4
6 14 9 12
1
10 4
19

8. Simple
At most one edge bet ween any pair of nodes.

9. Multigraph
Multiple edges bet ween vertices allowed.

10. Pseudograph
Self-loops are permitted.

11. G = (V, E)

13. What’s a node?
vertex
point
junction
0-simplex

16. What’s an edge?
arc
branch
line
link
1-simplex

17. Directed

20. Undirected

21. Undirected

26. Visualizations

27. You are here.

29. (Graph does not include Justin Bieber)

30. Social Graphs

41. Find the band that is most often co-listened with the given one.

42. People
Find the band that is most often co-listened with the given one.

43. People
Bands
Find the band that is most often co-listened with the given one.

44. People
Bands
Find the band that is most often co-listened with the given one.

45. People
Bands
Find the band that is most often co-listened with the given one.

46. People
Bands
Find the band that is most often co-listened with the given one.

47. Basically, most kinds of simple
content/co-occurrence similarity.

48. That’s a 2-step path on a bipartite graph.
There are many of these ‘fundamental’
graph units:
- tripartite
- folksonomies (tripartite 3-graph + 2-
step path)
- multicolor-multiparity graph
- etc.

49. Graph Storage
Engines

50. Neo4j
“An embedded, disk-based, fully transactional Java persistence engine
that stores data structured in graphs rather than in tables.”
http://neo4j.org

51. HypergraphDB
“A general purpose, extensible, portable, distributed, embeddable,
open-source data storage mechanism. It is a graph database designed
specifically for artificial intelligence and semantic web projects.”
http://kobrix.org/hgdb.jsp

52. Special Purpose
Storage Engines

53. FlockDB
“FlockDB is a database that stores graph data, but it isn't a database optimized for
graph-traversal operations. Instead, it's optimized for very large adjacency lists,
fast reads and writes, and page-able set arithmetic queries.”
http://engineering.t witter.com/2010/05/introducing-
flockdb.html

54. Redis
“Redis is an advanced key-value store. [...] the dataset is not volatile, and values can be strings,
exactly like in memcached, but also lists, sets, and ordered sets. All this data types can be
manipulated with atomic operations to push/pop elements, add/remove elements, perform
server side union, intersection, difference bet ween sets, etc.”
http://code.google.com/p/redis

55. A Redis Friends/
Followers Example

56. Redis makes you think in terms of datastructures,
and operations on those structures.

57. Set:
Finite (for our cases) collection of objects in which
order has no significance and multiplicity is generally
ignored.
S = { Alice, Bob, Carol }
List:
Finite (for our cases) collection of objects in which
order *is* significant and multiplicity is allowed.
L = [ X, Y, X, Z, Q]

58. Insert a user into a set
SET uid:1000:username jperras
SET uid:1000:password bazinga!

59. Use sets for denoting my followers/people
I follow.
uid:1000:followers => Set of uids of all the followers users
uid:1000:following => Set of uids of all the following users

60. Adding a new follower
SADD uid:1000:following 1001
SADD uid:1001:followers 1000

61. Posting Updates
$r = Redis();
$postid = $r->incr("global:nextPostId");
$post = $User['id'] ."|". time() ."|". $status;
$r->set("post:$postid", $post);
$followers = $r->smembers("uid:".$User['id'].":followers");
if ($followers === false) $followers = Array();
$followers[] = $User['id']; /* Add the post to our own posts too */
foreach($followers as $fid) {
$r->push("uid:$fid:posts", $postid, false);
}
# Push the post on the timeline, and trim the timeline to the
# newest 1000 elements.
$r->push("global:timeline", $postid, false);
$r->ltrim("global:timeline",0,1000);

62. Common followers? - Set intersections!
SINTER users:1000:followers users:1000:followers

63. Let’s compare that
to MySQL

65. Can be Painful

67. Even More Pain

68. Relational databases can work for the simplest
of cases, but fail horribly at nearly all graph-related
operations/algorithms.

69. Graphs and graph-databases are only
going to be more and more useful.

70. However, graph algorithms are hard.
So don’t write your own.
And make sure you use a persistent storage engine
that is best suited for the type of queries
you will be performing.

71. Resources

72. Resources
The Algorithm Design Manual,
Steve S. Skiena
Programming Collective
Intelligence, Toby Segaran
Introduction to Algorithms,
Cormen, Leiserson, Rivest

73. @jperras

74. Photo Credits
Graph of the internet, circa 2003: http://www.duniacyber.com/freebies/education/what-
is-internet-lookslike/ (built from partial troll of public servers using traceroute)
My real friends for letting me use their Facebook profile images.

75. References
Large Scale Graph Algorithms (class lectures), Yuri Lifshits, Steklov Institute of
Mathematics at St. Petersburg
http://mathworld.wolfram.com/Set.html
Programming Collective Intelligence, Toby Segaran
The Algorithm Design Manual, Steve S. Skiena