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De Generatione Animalium
On the Generation of Animals
William Harvey, 1651
Ex ovo omnia
From the egg, everything
1578-1657
Denise Sheer ~ Inaugural Lecture 10th May 2010
From the chromosome…
everything
Denise Sheer
Centre for Neuroscience & Trauma
Denise Sheer ~ Inaugural Lecture 10th May 2010
Walther Flemming
1843-1905
Antonie van Leeuwenhoek
1632-1723
Polytene chromosomes
in Chironomus
Dividing cells
Chick red blood cells
Denise Sheer ~ Inaugural Lecture 10th May 2010
Cells behave as they do because of their genes
Cell nucleus
46 chromosomes
GenesDNA
Denise Sheer ~ Inaugural Lecture 10th May 2010
Where do genes map onto chromosomes?
What is the architecture of the chromosome?
Which genetic abnormalities are involved in cancer?
Denise Sheer ~ Inaugural Lecture 10th May 2010
A path travelled well….
Denise Sheer ~ Inaugural Lecture 10th May 2010
Dr Jenni Tsafrir
Genetics of eye colour
What was known then about chromosomes?
1965 - Barbara McClintock, Cornell University-Aspects of Gene Control in Higher Organisms
“mechanisms related to.. .the chromosomes…and the highly organized nuclei”.
Down Syndrome
Denise Sheer ~ Inaugural Lecture 10th May 2010
1969-1973
University of the Witwatersrand
Johannesburg
B.Sc - Zoology & Embryology
BSc (Hons) - Zoology
Prof Barry FabianProf Boris Balinsky
Professor Barry Fabian	

nature Lifetime Mentoring Award 2007	

Denise Sheer ~ Inaugural Lecture 10th May 2010
Hamburger & Hamilton 1951
Balinsky 1925
Amabis & Cabral 1970
Denise Sheer ~ Inaugural Lecture 10th May 2010
1974-1975
South African Institute
of Medical Research
Anti-Snake Venom
Primate Research
Prof Trefor Jenkins
Diagnostic genetics
Genetic counselling
Chromosome banding
“Effects of dagga on primate chromosomes”
Down Syndrome
Denise Sheer ~ Inaugural Lecture 10th May 2010
Supervisor: Dr Martin Bobrow
1976-1980
University of Oxford
D.Phil.
Sir Walter Bodmer
Reproduced with kind permission of Juliet Wood
X X
x
X
Xx
v
vv vv v
v vv v
v v v
vv v
v vv v
v
vv
X
vv v
v vv v
v vv v
vv v
v vv v
v vv
x
Human
Cells
Mouse
Cells
Gene 1 Gene 2 Gene 3
Human-Mouse Hybrid Cells
Mapping genes onto chromosomes
Denise Sheer ~ Inaugural Lecture 10th May 2010
Imperial Cancer Research Fund/
Cancer Research UK
1980-1982 Post-Doctoral Research Fellow with Dr. Ellen Solomon
1982-2006 Head: Human Cytogenetics Laboratory
Mapping genes onto chromosomes
Denise Sheer ~ Inaugural Lecture 10th May 2010
Mapping genes onto chromosomes
LIMK1
TP53
XPG
ERBA2
ERBA1
APC
MHC
KIR/ILT
TOP2B
FRAX
EIF-5A
NOS1
ELK3
NOS3
HOXB
Denise Sheer ~ Inaugural Lecture 10th May 2010
Mapping the APC gene on chromosome 5
Adenomatous Polyposis Coli APC gene at 5q21
Bodmer et al 1987
Denise Sheer ~ Inaugural Lecture 10th May 2010
Genetic abnormalities in cancer
At the cellular level, cancer is a genetic disease
Denise Sheer ~ Inaugural Lecture 10th May 2010
Acute Lymphoblastic Leukaemia
Acute Myelomonocytic Leukaemia
Acute Promyelocytic Leukaemia
Breast Carcinoma
Chronic Myeloid Leukaemia
Colorectal Adenoma
Congenital Fibrosarcoma
Ewing’s Sarcoma
Glioblastoma
Krukenberg Tumour
Neuroblastoma
Ovarian Carcinoma
Pancreatic Carcinoma
Primitive Neuro-ectodermal Tumour
Genetic abnormalities in cancer
Ovarian Carcinoma
Glioblastoma
Neuroblastoma
Breast Carcinoma
Denise Sheer ~ Inaugural Lecture 10th May 2010
15;17 identified in all cases of APL
Mapping the breakpoints
15;17 chromosome translocation in Acute Promyelocytic Leukaemia
X X
x
X
Xx
v
Vv vv v
v vv v
v v v
v
Human
Cells
Mouse
Cells
vv v
v vv v
vv V
Gene 1
vv v
v vv v
v vv
x
Gene 2
Sheer et al 1983
Sheer et al 1985
Denise Sheer ~ Inaugural Lecture 10th May 2010
What is the architecture of the chromosome?
“The great tragedy of science -
the slaying of a beautiful hypothesis by an ugly fact”
Thomas Henry Huxley (1870)
Thomas & Marion Cremer
Comings 1968 Cremer et al 1976
Chinese Hamster cells after
focal laser UV irradiation
Chromosome Territories
Inter-Chromosome Domain
Cremer et al 1993
Denise Sheer ~ Inaugural Lecture 10th May 2010
Chromosomes occupy discrete territories
Cremer & Cremer 2006Bolzer et al 2005
Denise Sheer ~ Inaugural Lecture 10th May 2010
6!
TAP2
PSMB8
TAP1
PSMB9
C2
BF
C4
HLA-F
HLA-G
HLA-A
HLA-E
HLA-C
HLA-B
MICB
C6orf10
HLA-DRA
HLA-DQA1,2
HLA-DQB1,2
HLA-DOB
HLA-DMA
HLA-DOA
HLA-DPA1
RING1
HLA-DPB1
TAPBP
TNF
HSPA1
TNXB
NOTCH4
HLA-DRB1,3,4,5
*
*
* *
*
* * *
*
*
*
*****
*** *
*
The Major Histocompatibility Complex - a perfect model
MHC-
Cell-Type Specific & Inducible Gene Activity
Denise Sheer ~ Inaugural Lecture 10th May 2010
MHC	
  
Chr	
  6	
  
Inac&ve	
   Ac&ve	
  
Chromosome architecture is related to gene activity
Volpi et al 2000
Inac&ve	
   Ac&ve	
  
* *
*
*
*
*
Ac&ve	
  
Denise Sheer ~ Inaugural Lecture 10th May 2010
2006
Centre for Neuroscience & Trauma
Blizard Institute of Cell & Molecular Science
Barts & the London School of Medicine & Dentistry
Queen Mary University of London
What is the architecture of the chromosome?
What are the molecular determinants?
Which genetic abnormalities are involved in cancer?
How do children’s brain tumours arise?
Denise Sheer ~ Inaugural Lecture 10th May 2010
Chromosome architecture is dependent on signalling pathways
Inac&ve	
  
Ac&ve	
  
Interferon Gamma
JAK-STAT SIGNALLING
Christova et al 2007
Denise Sheer ~ Inaugural Lecture 10th May 2010
Chromosome architecture is related to gene activity
Inac&ve	
  
Ac&ve	
  
Anchored sites
Ottaviani et al 2008a,b
Denise Sheer ~ Inaugural Lecture 10th May 2010
Genetic abnormalities in paediatric low grade astrocytoma
SEERDenise Sheer ~ Inaugural Lecture 10th May 2010
Tiny duplication on chromosome 7 in pilocytic astrocytoma
Denise Sheer ~ Inaugural Lecture 10th May 2010
Forshew et al 2009; Tatevossian et al 2010; Lawson et al 2010
Tiny duplication on chromosome 7 in pilocytic astrocytoma
Denise Sheer ~ Inaugural Lecture 10th May 2010
KIAA1549 BRAF
Genes duplicated on chromosome 7
Forshew et al 2009; Tatevossian et al 2010; Lawson et al 2010Denise Sheer ~ Inaugural Lecture 10th May 2010
KIAA1549 BRAF
KIAA1549 BRAFKIAA1549- BRAF
fusion
Forshew et al 2009; Tatevossian et al 2010; Lawson et al 2010
Genes duplicated on chromosome 7
Denise Sheer ~ Inaugural Lecture 10th May 2010
The MAP kinase signalling pathway
BRAF	

MEK1/2	

ERK1/2	

RAS	

NF1	

Signals from outside the cell
Forshew et al 2009; Tatevossian et al 2010; Lawson et al 2010
Regulated Cell Division	

Denise Sheer ~ Inaugural Lecture 10th May 2010
BRAF	

MEK1/2	

ERK1/2	

RAS	

P	

P	

Regulated Cell Division	

NF1	

Signals from outside the cell
The MAP kinase signalling pathway
Denise Sheer ~ Inaugural Lecture 10th May 2010
BRAF fusion causes cells to keep dividing
MEK1/2	

ERK1/2	

RAS	

P	

P	

NF1	

Signals from outside the cell
BRAFKIAA1549
Increased Cell Division	

Denise Sheer ~ Inaugural Lecture 10th May 2010
MEK1/2	

ERK1/2	

RAS	

P	

P	

NF1	

Signals from outside the cell
BRAFKIAA1549
New opportunities for treatment for pilocytic astrocytoma
Inhibitor
Increased Cell Division	

Denise Sheer ~ Inaugural Lecture 10th May 2010
BRAF fusions: A microhomology mediated mechanism?
microhomology
insertion
microhomology
microhomology
microhomology
microhomology
insertion
Lawson, Hindley et alDenise Sheer ~ Inaugural Lecture 10th May 2010
BRAF fusions: A microhomology mediated mechanism?
Denise Sheer ~ Inaugural Lecture 10th May 2010
Where to now?
Where do genes map onto chromosomes?
What is the architecture of the chromosome?
Which genetic abnormalities are involved in cancer?
Cremer et al 2006
Denise Sheer ~ Inaugural Lecture 10th May 2010
Centre for Neuroscience and Trauma
Prof John Priestley ~ Prof Gavin Giovannoni
Surinder Pal ~ Carol Brown
Sir Nick Wright
Prof Tom MacDonald
Prof Mike Curtis
Jo Kirner ~ Kerry Newbury
Josie Dance
BLIZARD INSTITUTE OF CELL AND MOLECULAR SCIENCE
Denise Sheer ~ Inaugural Lecture 10th May 2010
Johan Aarum
Pavel Bezecny
Rossi Christova
Tim Forshew
Guy Hindley
Gabriel Jamie
Tania Jones
Andrew Lawson
Elliott Lever
William Ogunkolade
Diego Ottaviani
Chris Pieri
Jarek Szary
Ruth Tatevossian
Denise Sheer ~ Inaugural Lecture 10th May 2010
Jane Babbage
Srinjan Basu
Andi Bolzer
Guiseppe Calabrese
Edith Chevret
Rossen Donev
Ceri Edwards
Luda Federova
Rachel Gillingham
Pat Gorman
Vikki Groves
Peter Johonnett
Fiona Kiely
Xin Mao
Chiara Mazzanti
Paul Mulholland
Rosella Muresu
Alistair Newall
Rodger Palmer
Ketan Patel
Chrys Poulikas
Sue Rider
Rebecca Roylance
Gabi Senger
Carol Shiels
Janet Shipley
Petros Takousis
Badmavady Segarane
Clare Taylor
Radost Vatcheva
Emanuela Volpi
Jayson Wang
Sarah Williams
Jill Williamson
Pei Jun Wu
Stephan Beck
Walter Bodmer
Marion Cremer
Thomas Cremer
Thomas Down
David Ellison
Thomas Jacques
Chris Jones
Gavin Kelly
David Kelsell
Steve Krawetz
Mike Levin
Andrew Lister
Antony Michalski
Richard Mitter
Paul Mulholland
Dean Nizetic
Andrew Pearson
Jon Pritchard
Jiannis Ragoussis
Peter Sasieni
Janet Shipley
Andrew Silver
Jeremy Squire
John Trowsdale
Frank Uhlmann
Bryan Young
Denise Sheer ~ Inaugural Lecture 10th May 2010
Denise Sheer ~ Inaugural Lecture 10th May 2010

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Denise Sheer Inaugural Lecture

  • 1. De Generatione Animalium On the Generation of Animals William Harvey, 1651 Ex ovo omnia From the egg, everything 1578-1657 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 2. From the chromosome… everything Denise Sheer Centre for Neuroscience & Trauma Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 3. Walther Flemming 1843-1905 Antonie van Leeuwenhoek 1632-1723 Polytene chromosomes in Chironomus Dividing cells Chick red blood cells Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 4. Cells behave as they do because of their genes Cell nucleus 46 chromosomes GenesDNA Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 5. Where do genes map onto chromosomes? What is the architecture of the chromosome? Which genetic abnormalities are involved in cancer? Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 6. A path travelled well…. Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 7. Dr Jenni Tsafrir Genetics of eye colour What was known then about chromosomes? 1965 - Barbara McClintock, Cornell University-Aspects of Gene Control in Higher Organisms “mechanisms related to.. .the chromosomes…and the highly organized nuclei”. Down Syndrome Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 8. 1969-1973 University of the Witwatersrand Johannesburg B.Sc - Zoology & Embryology BSc (Hons) - Zoology Prof Barry FabianProf Boris Balinsky Professor Barry Fabian nature Lifetime Mentoring Award 2007 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 9. Hamburger & Hamilton 1951 Balinsky 1925 Amabis & Cabral 1970 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 10. 1974-1975 South African Institute of Medical Research Anti-Snake Venom Primate Research Prof Trefor Jenkins Diagnostic genetics Genetic counselling Chromosome banding “Effects of dagga on primate chromosomes” Down Syndrome Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 11. Supervisor: Dr Martin Bobrow 1976-1980 University of Oxford D.Phil. Sir Walter Bodmer Reproduced with kind permission of Juliet Wood X X x X Xx v vv vv v v vv v v v v vv v v vv v v vv X vv v v vv v v vv v vv v v vv v v vv x Human Cells Mouse Cells Gene 1 Gene 2 Gene 3 Human-Mouse Hybrid Cells Mapping genes onto chromosomes Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 12. Imperial Cancer Research Fund/ Cancer Research UK 1980-1982 Post-Doctoral Research Fellow with Dr. Ellen Solomon 1982-2006 Head: Human Cytogenetics Laboratory Mapping genes onto chromosomes Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 13. Mapping genes onto chromosomes LIMK1 TP53 XPG ERBA2 ERBA1 APC MHC KIR/ILT TOP2B FRAX EIF-5A NOS1 ELK3 NOS3 HOXB Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 14. Mapping the APC gene on chromosome 5 Adenomatous Polyposis Coli APC gene at 5q21 Bodmer et al 1987 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 15. Genetic abnormalities in cancer At the cellular level, cancer is a genetic disease Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 16. Acute Lymphoblastic Leukaemia Acute Myelomonocytic Leukaemia Acute Promyelocytic Leukaemia Breast Carcinoma Chronic Myeloid Leukaemia Colorectal Adenoma Congenital Fibrosarcoma Ewing’s Sarcoma Glioblastoma Krukenberg Tumour Neuroblastoma Ovarian Carcinoma Pancreatic Carcinoma Primitive Neuro-ectodermal Tumour Genetic abnormalities in cancer Ovarian Carcinoma Glioblastoma Neuroblastoma Breast Carcinoma Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 17. 15;17 identified in all cases of APL Mapping the breakpoints 15;17 chromosome translocation in Acute Promyelocytic Leukaemia X X x X Xx v Vv vv v v vv v v v v v Human Cells Mouse Cells vv v v vv v vv V Gene 1 vv v v vv v v vv x Gene 2 Sheer et al 1983 Sheer et al 1985 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 18. What is the architecture of the chromosome? “The great tragedy of science - the slaying of a beautiful hypothesis by an ugly fact” Thomas Henry Huxley (1870) Thomas & Marion Cremer Comings 1968 Cremer et al 1976 Chinese Hamster cells after focal laser UV irradiation Chromosome Territories Inter-Chromosome Domain Cremer et al 1993 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 19. Chromosomes occupy discrete territories Cremer & Cremer 2006Bolzer et al 2005 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 20. 6! TAP2 PSMB8 TAP1 PSMB9 C2 BF C4 HLA-F HLA-G HLA-A HLA-E HLA-C HLA-B MICB C6orf10 HLA-DRA HLA-DQA1,2 HLA-DQB1,2 HLA-DOB HLA-DMA HLA-DOA HLA-DPA1 RING1 HLA-DPB1 TAPBP TNF HSPA1 TNXB NOTCH4 HLA-DRB1,3,4,5 * * * * * * * * * * * ***** *** * * The Major Histocompatibility Complex - a perfect model MHC- Cell-Type Specific & Inducible Gene Activity Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 21. MHC   Chr  6   Inac&ve   Ac&ve   Chromosome architecture is related to gene activity Volpi et al 2000 Inac&ve   Ac&ve   * * * * * * Ac&ve   Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 22. 2006 Centre for Neuroscience & Trauma Blizard Institute of Cell & Molecular Science Barts & the London School of Medicine & Dentistry Queen Mary University of London What is the architecture of the chromosome? What are the molecular determinants? Which genetic abnormalities are involved in cancer? How do children’s brain tumours arise? Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 23. Chromosome architecture is dependent on signalling pathways Inac&ve   Ac&ve   Interferon Gamma JAK-STAT SIGNALLING Christova et al 2007 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 24. Chromosome architecture is related to gene activity Inac&ve   Ac&ve   Anchored sites Ottaviani et al 2008a,b Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 25. Genetic abnormalities in paediatric low grade astrocytoma SEERDenise Sheer ~ Inaugural Lecture 10th May 2010
  • 26. Tiny duplication on chromosome 7 in pilocytic astrocytoma Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 27. Forshew et al 2009; Tatevossian et al 2010; Lawson et al 2010 Tiny duplication on chromosome 7 in pilocytic astrocytoma Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 28. KIAA1549 BRAF Genes duplicated on chromosome 7 Forshew et al 2009; Tatevossian et al 2010; Lawson et al 2010Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 29. KIAA1549 BRAF KIAA1549 BRAFKIAA1549- BRAF fusion Forshew et al 2009; Tatevossian et al 2010; Lawson et al 2010 Genes duplicated on chromosome 7 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 30. The MAP kinase signalling pathway BRAF MEK1/2 ERK1/2 RAS NF1 Signals from outside the cell Forshew et al 2009; Tatevossian et al 2010; Lawson et al 2010 Regulated Cell Division Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 31. BRAF MEK1/2 ERK1/2 RAS P P Regulated Cell Division NF1 Signals from outside the cell The MAP kinase signalling pathway Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 32. BRAF fusion causes cells to keep dividing MEK1/2 ERK1/2 RAS P P NF1 Signals from outside the cell BRAFKIAA1549 Increased Cell Division Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 33. MEK1/2 ERK1/2 RAS P P NF1 Signals from outside the cell BRAFKIAA1549 New opportunities for treatment for pilocytic astrocytoma Inhibitor Increased Cell Division Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 34. BRAF fusions: A microhomology mediated mechanism? microhomology insertion microhomology microhomology microhomology microhomology insertion Lawson, Hindley et alDenise Sheer ~ Inaugural Lecture 10th May 2010
  • 35. BRAF fusions: A microhomology mediated mechanism? Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 36. Where to now? Where do genes map onto chromosomes? What is the architecture of the chromosome? Which genetic abnormalities are involved in cancer? Cremer et al 2006 Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 37. Centre for Neuroscience and Trauma Prof John Priestley ~ Prof Gavin Giovannoni Surinder Pal ~ Carol Brown Sir Nick Wright Prof Tom MacDonald Prof Mike Curtis Jo Kirner ~ Kerry Newbury Josie Dance BLIZARD INSTITUTE OF CELL AND MOLECULAR SCIENCE Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 38. Johan Aarum Pavel Bezecny Rossi Christova Tim Forshew Guy Hindley Gabriel Jamie Tania Jones Andrew Lawson Elliott Lever William Ogunkolade Diego Ottaviani Chris Pieri Jarek Szary Ruth Tatevossian Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 39. Jane Babbage Srinjan Basu Andi Bolzer Guiseppe Calabrese Edith Chevret Rossen Donev Ceri Edwards Luda Federova Rachel Gillingham Pat Gorman Vikki Groves Peter Johonnett Fiona Kiely Xin Mao Chiara Mazzanti Paul Mulholland Rosella Muresu Alistair Newall Rodger Palmer Ketan Patel Chrys Poulikas Sue Rider Rebecca Roylance Gabi Senger Carol Shiels Janet Shipley Petros Takousis Badmavady Segarane Clare Taylor Radost Vatcheva Emanuela Volpi Jayson Wang Sarah Williams Jill Williamson Pei Jun Wu Stephan Beck Walter Bodmer Marion Cremer Thomas Cremer Thomas Down David Ellison Thomas Jacques Chris Jones Gavin Kelly David Kelsell Steve Krawetz Mike Levin Andrew Lister Antony Michalski Richard Mitter Paul Mulholland Dean Nizetic Andrew Pearson Jon Pritchard Jiannis Ragoussis Peter Sasieni Janet Shipley Andrew Silver Jeremy Squire John Trowsdale Frank Uhlmann Bryan Young Denise Sheer ~ Inaugural Lecture 10th May 2010
  • 40. Denise Sheer ~ Inaugural Lecture 10th May 2010