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Molecular	Founda-ons	of	Paediatric	Gliomas:	
The	Plot	Thickens	
Denise Sheer
Overview	
1.  Cancer	as	a	disease	of	the	genome	
2.  Paediatric	brain	tumours	
3.  Glioblastoma	
4.  Low-grade	glioma	
5.  HeadSmart
• Cancer arises from the accumulation of Genetic aberrations
• Epigenetic aberrations are also present
• Together, they give rise to altered gene expression
• Over 500 genes are now known to be involved in cancer
1.	Cancer	as	a	disease	of	the	genome
If we know which genes are involved, we can:
•  Have a better understanding of cancer biology
•  Develop diagnostic and prognostic markers
•  Follow the clinical course
•  Develop targeted treatment
Major classes of cancer genes
Gene-c	aberra-ons	
Chromosome	defects	
Muta-ons
Low mutation frequency in children’s cancer
Strachan et al. Genetics & Genomics in Medicine (2015)
Epigene-c	aberra-ons	
Mechanisms	for	altering	gene	expression		
without	affec6ng	the	DNA	sequence	
Histone	tail	modifica-ons	
DNA	methyla-on	
Regulatory	RNA
2.	Paediatric	brain	tumours	
•  Leading	cause	of	cancer-related	death	in	children	
•  Difficult	to	treat	
•  Require	interdisciplinary	therapeu-c	approach	
•  Survivors	can	have	long-term	neurological,	motor,	hormonal,	
&	cogni-ve	impairment	
•  Neuropathology	moved	from	morphology-based	approach	to	
use	of	immunohistochemical	&	molecular	markers	
•  Biology	star-ng	to	be	understood	from	molecular	studies	
•  Targeted	treatments	emerging
Grade I
Pilocytic astrocytoma
Angiocentric glioma
Grade II
Diffuse astrocytoma
Pilomyxoid astrocytoma
Pleomorphic xanthoastrocytoma
Grade III
Anaplastic astrocytoma
Grade IV
Glioblastoma
Overview	of	paediatric	gliomas
3. Paediatric glioblastoma
•  Highly	malignant,	diffusely	infiltra-ng	tumour	
•  Leading	cause	of	cancer-related	death	in	children	
•  2-year	survival	~12%	
•  Histology	similar	to	adult	GBM	
•  Molecular	founda-ons	are	dis-nct	from	adult	GBM	
Paediatric GBM Young adult GBM Adult GBM
Adapted from E.H.Raabe et al, Cancer Cell 2012
UPDATED:	C.W.Brennan	et	al	(TCGA),	Cell	2013		
TP53	
RTK/RAS/PI3K		
RB	
543	glioblastomas	
The	Cancer	Genome	Atlas	(TCGA)	Research	Network,	Nature	2008	
Adult	GBM:		
Deregula-on	of	p53,	RB,	RTK/RAS/PI3K	pathways
Paediatric glioblastoma
Muta-ons	in	Histone	H3.3,	ATRX	&	DAXX	
J.Schwartzentruber	et	al,	Nature	2012	
(H3.3)
Paediatric glioblastoma
Nucleosomal	
fibre	
Core	histones	
Linker	histone	
Essen-al	Cell	Biology,	Alberts	et	al,	3rd	Ed.	
Muta-ons	in	Histone	H3.3,	ATRX	&	DAXX
H3.3	
H3.3	is	enriched	at	regulatory	elements,	promoters	and	ac-ve	genes
The	ATRX/DAXX	complex	loads	H3.3	onto	chroma-n	
DAXX	H3.3	
ATRX
Muta-ons	in	Histone	H3.3	
Lead	to	altered	gene	expression	
K27M	 G34R/V	
J. Schwartzentruber et al, Nature 2012, L. Bjerke et al, Cancer Research 2013
MYCN	
Global	loss	of	H3K27m3	
Sequestra-on	of	Polycomb	EZH2	
TP53		mut
Adapted from A.Korshunov et al, Acta Neuropathol 2015
Dis-nct	molecular	subgroups	in	paediatric	high-grade	glioma
Gajjar et al, JCO 2015	
Dis-nct	molecular	subgroups	in	paediatric	high-grade	glioma
Iden-fica-on	of	biomarkers	
Improved	clinical	trial	design	
Development	of	targeted	treatment	
Dis-nct	molecular	subgroups	in	paediatric	high-grade	glioma
Pilocytic astrocytoma
•  Most common paediatric brain tumour
•  Typically in cerebellum or midline along hypothalamic/optic pathways
•  Well-circumscribed, non-invasive
•  Usually treated with surgery alone
•  Activating mutations in the MAPK signalling pathway (and PI3K)
Diffuse astrocytoma
•  Infiltrating tumours
•  Occur throughout the CNS
•  Difficult to remove with surgery alone
•  Treated with radiation and chemotherapy
•  Activating mutations in the MAPK signalling pathway (and PI3K)
•  MYB mutations
4.	Paediatric	low-grade	glioma
KIAA1549-BRAF
Chr 7
KIAA1549 BRAF
Tandem	duplica-on	
Forshew	et	al,	J.	Pathol	2009	
BRAF	gene	fusions	in	pilocy-c	astrocytomas	
				BRAF	
7	
	control	
probe
BRAF	
KIAA1549	
KIAA1549-BRAF	
Transmembrane	domain	
Ras-binding	domain	
Cysteine-rich	domain	
Kinase	domain	
Glycine	–rich	loop	
Ac-va-on	segment	
Fusion	breakpoint	
T.Forshew et al, J. Pathol 2009; R.G.Tatevossian et al, J. Cell Physiol 2010
KIAA1549-BRAF fusion
BRAF	muta-on	in	pilocy-c	and	diffuse	astrocytomas	
Ras-binding	domain	
Cysteine-rich	domain	
Kinase	domain	
Glycine–rich	loop	
Ac-va-on	segment	
V600E
Extracellular	Signals	
Activation of the MAPK pathway
BRAF	
MEK1/2	
ERK1/2	
RAS	
P	
P	
Prolifera4on	
NF1	
Receptor	Tyrosine	Kinases
Activation of the MAPK pathway
BRAF	
MEK1/2	
ERK1/2	
RAS	
P	
P	
Oncogene-Induced	Senescence	
NF1	
Receptor	Tyrosine	Kinases	
Extracellular	Signals	
E.H.Raabe, Clin Cancer Res 2011; K.Jacob, Clin Cancer Res 2011
Whole	genome	sequencing	of	paediatric	low-grade	gliomas	
J.Zhang et al, Nature Genetics 2013
J.Zhang et al, Nature Genetics 2013
Whole	genome	sequencing	of	paediatric	low-grade	gliomas
KIAA1549-BRAF	
FAM131-BRAF	
FXR1-BRAF	
BRAF-MACF	
SRGAP3-RAF1	
QKI-RAF1	
BRAFv600e	
NF1-m	
FGFR1-TKD	
FGFR1-TACC1	
FGFR1-TACC3	
QKI-NTRK2	
NACC2-NTRK2	
Zhang et al, Nat Genetics 2013; Jones et al, Nat Genet 2013; Penman et al, Front Oncol 2015
Muta-ons	in	paediatric	low-grade	gliomas
Vemurafenib
Dabrafenib
Sorafenib
Selumetinib
Perifosine
Perifosine
MK2206
Rapamycin
Everolimus
PI-103
Bevacizumab
Sorafenib
Erlotinib
VEGF
VEGFR
EGFR
KIAA1549-BRAF	
FAM131-BRAF	
FXR1-BRAF	
BRAF-MACF	
SRGAP3-RAF1	
QKI-RAF1	
BRAFv600e	
NF1-m	
FGFR1-TKD	
FGFR1-TACC1	
FGFR1-TACC3	
QKI-NTRK2	
NACC2-NTRK2	
Zhang et al, Nat Genetics 2013; Jones et al, Nat Genet 2013; Penman et al, Front Oncol 2015
Opportuni-es	for	targeted	therapy
M.A. Karajannis, Neuro-Oncology 2014
Opportuni-es	for	targeted	therapy	
NCT01338857
Sorafenib
ACCELERATED	
TUMOUR		
GROWTH!
Sorafenib	trial:	Accelerated	tumour	growth	
due	to	inhibi-on	of	senescence?	
BRAF	
MEK1/2	
ERK1/2	
RAS	
P	
P	
Oncogene-Induced	Senescence	
NF1	
Receptor	Tyrosine	Kinases	
E.H.Raabe, Clin Cancer Res 2011; K.Jacob, Clin Cancer Res 2011
Pilocy-c	astrocytomas	have	up-regula-on	of	microRNAs	that	
target	the	MAPK	and	NF-kB	pathways:		
Jones	Jeyapalan	et	al,	Acta	Neuropath	Communica-ons	(in	press)		
Sorafenib	trial:	Accelerated	tumour	growth	
due	to	inhibi-on	of	regulatory	factors?
Cross-talk	between	signalling	pathways:		
M.C.	Mendoza	et	al,	TIBS	2011	
Sorafenib	trial:	Accelerated	tumour	growth	
due	to	pathway	cross-talk?
Gene-c,	Epigene-c,	Protein		
profiling	
Biology	 Diagnosis	
Sub-classifica-on	
Prognosis	
Response	to	therapy	
New	therapeu-c	
approaches	
We	need	a	comprehensive	understanding	of	all	
the	regulatory	elements	to	realise	
	the	full	poten-al	for	pa-ent	care
Thanks to:
American	Lebanese	Syrian		
Associated	Chari-es	
Dr.	Thomas	Jacques,	Ins-tute	of	Child	Health/GOSH,	University	College	London	
Prof.	David	Ellison	&	Dr.	Ruth	Tatevossian,	St	Jude	Children’s	Research	Hospital,	Memphis	USA	
Jennie	
Jeyapalan	
Tania	
CorbeN-Jones	
Johan	Aarum	
William	Qays	
Foster-Hall	
Neil	Atam
5. HeadSmart	
HeadSmart	is a national campaign
in the UK to raise awareness of the
signs and symptoms of brain tumours
in children and young people
amongst the public and health professionals
to reduce diagnosis times,
reducing long-term disabilities and saving lives
Early diagnosis can
improve the outcome –
saving lives and
reducing long-term
disability
The	‘pathway’	to	diagnosis	
Children	open	have	mul-ple	contacts	with	health	professionals	before	diagnosis
Why	do	delays	in	diagnosis	occur?	
•  Symptoms	and	signs	mimic	common,	less	serious	disorders	
•  Symptoms	&	signs	are	very	varied	
– depending	on	their	loca-on	
– depending	on	the	age	of	the	child	
– their	severity	can	fluctuate	
•  	Childhood	brain	tumours	are	rela-vely	rare	
– GPs	will	typically	see	only	one,	maybe	two,	childhood	
brain	tumours	in	their	whole	career
Launch:	June	2011	
•  Over	1.5	million	Symptoms	Cards	distributed	
•  Extensive	media	campaign	
•  Almost	100,000	hits	on	website	
•  Drama-c	improvement	in	diagnos-c	interval
Online	educa-onal	materials	and	training	
www.headsmart.org.uk
David	Walker:		
A	new	clinical	guideline	from	the	Royal	College	of	
Paediatrics	and	Child	Health	with	a	na-onal	awareness	
campaign	accelerates	brain	tumor	diagnosis	in	UK	children
—“HeadSmart:	Be	Brain	Tumour	Aware”		
Neuro-Oncology	2015	
Mean	Diagnos4c	Interval:	
	 	 	 	 	 		 	 	Pre-campaign 	-	14	weeks	
	 	 	 	 	 	 	 	May	2013	 	-	6.7	weeks
Supported	by:	
A	Partnership	between:	
Pioneered	by:	Professor	David	Walker,	Noungham

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