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Linking Environmental and Health Data for
Epidemiologic Research
Howard Chang
howard.chang@emory.edu
Department of Biostatistics and Bioinformatics, Emory University
SAMSI CLM Opening Workshop
August 2017
Health Impact Assessment
Analytic framework for evaluating how a policy
or program affects population health.
Health
Data
Weather
Data
1. Health Effect
Estimation
Population
Projection
Climate
Simulations
2. Bias Correction
3. Health Impact
Projection
Health Effects of Environmental Risks
Exposures Health Outcomes
• Temperature
• Air pollution
• Heat waves
• Wildfire
• Heavy rainfall
• Pollen
• Mold
• Salt water intrusion
• Mortality
• Hospital admissions
• Emergency room visits
• Adverse birth outcomes
• Diarrheal diseases
• Vector-born diseases
What are the relevant spatial and temporal scale?
Challenges in Environmental Epidemiology
• Observational and retrospective.
• Small effects but ubiquitous exposures.
• Data are complex, incomplete, and messy.
• Both health and exposure data have spatial and
temporal dependence.
• Focus on causal inference: bias, measurement
error and confounding,
Health Effect Estimation – Health Data
Administrative Databases
• Death and birth certificates
• Medicare and hospital billing records
• Medical records
Advantages
• Individual-level data
• Centralized and cost efficient
Disadvantages
• Missing important individual-level confounders
• Crude geographical information/history
Some Research Interests
• Identify susceptible and vulnerable populations.
• Improve exposure assessment methods for
health effect/impact analyses.
• Estimating joint effects of multiple exposures.
• Evaluate environmental regulations/policies
(accountability) and mitigation strategies.
Atlanta Emergency Department Visits
• 20-county Atlanta
metropolitan area.
• Billing records of ED visits
between 1993 to 2012.
• ≈ 10 million individual
records
Daily Time-Series Analysis
2002 2004 2006 2008 2010
2000300040005000
Daily Emergency Department Visits in Atlanta
Counts
2002 2004 2006 2008 2010
010203040
Daily Maximum Temperature
Calendar Date
Temperature(Celsius)
Daily Time-Series Analysis
Daily total ED counts
Daily
Temperature
(e.g. ATL Airport)
Seasonal trend
Long-term trend
Day-of-week
Proxies for:
Diet
Access to care
Population health
log[𝐸 𝑌𝑡 ] =𝛽𝑋𝑡 + Confounders
ED Visits and Temperature
Broad Outcome Groups among the Elderly
INTERN GI DIA FEI CIRC RESP REN
AL
INTERN = all internal causes
GI = intestinal infections
DIA = diabetes
FEI = fluid & electrolyte
imbalance
CIRC = all circulatory diseases
RESP = all respiratory
diseases
RENAL = all renal diseases
*Associations of lag 0 TMX and ED visit outcomes based on primary ICD-9 codes
*RRs for TMX changes from 27 oC to 32 oC (25th to 75th percentile)
Winquist A, Grundstein AJ, Chang HH, Hess J Sarnat SE (2016). Environmental Research 147, 314-323.
ED Visits and Heat Waves
Heat wave definitions:
• Heat wave period = ≥2 consecutive days with daily metric
beyond the 98th percentiles.
• The first day of a heat wave period treated removed.
• Max/Avg/Min temperature and apparent temperature.
The added burden of sustained high temperature.
ED Visit-Heat Wave, Atlanta 1993-2012
Chen T, Sarnat SE, Grundstein AJ, Winquist A, Chang HH (2017). Environmental Health Perspectives. DOI:10.1289/EHP44
Heat Wave Statistics
Upper triangle = union days; lower triangle = intersection days
Heat
Wave
Def
MAXT MINT AVGT MAXAT MINAT AVGAT
MAXT 256 133 122 150 143
MINT 67 (26%) 251 259 232 245
AVGT 81 (61%) 104 (41%) 141 154 147
MAXAT 78 (64%) 82 (32%) 91 (65%) 154 139
MINAT 37 (25%) 96 (41%) 65 (42%) 51 (33%) 139
AVGAT 66 (46%) 105 (43%) 94 (64%) 88 (63%) 75 (54%)
Concordance-discordance between heat wave metrics.
Preterm Birth-Heat Wave, Atlanta 1994-2006
0.6
1.2
RR(95%ConfidenceInterval)
0.8
1.4
1.0
Daily counts of preterm birth with joint strata of gestational week,
maternal race, and maternal education, and offset by the number of
fetuses-at-risk of preterm birth on each day.
Darrow LA, Strickland MJ, Chang HH (2015) Society for Epidemiologic Research Annual Meeting. Denver, Colorado.
Pediatric ED Asthma Visit and Temperature
O’Lenick CR, Winquist A, Chang HH, Kramer MR, Mulholland JA, , Grundstein AJ, Sarnat SE (2017) Environmental Research,
156, 132-144.
Spatial Exposure Uncertainty
Data Integration for Exposure Assessment
Exposure
Monitoring
Measurement
Satellite
Imagery
Computer
Model
Simulation
Meteorology
Physical
Variables
Fine-Scale Temperature Assessment
Daytime Nighttime
1 km spatial resolution over metropolitan Houston for daytime (left; 4:00 pm)
and nighttime (right; 12:00 am), created with the HRLDAS model.
Monaghan AJ, Hu L, Brunsell NA, Barlage M, Wilhelmi OV (2014). Journal of Geophysical Research: Atmospheres, 119(11),
6376-6392.
Estimated Average PM2.5 Levels in 2001
(𝜇𝑔/𝑚3
)
1km x 1km spatial grid in 20-county Atlanta
Are Finer Exposure Estimates Better?
CMS: central monitoring station
PWA: kriging + population weighted average
FSD: data fusion
Health Effect Associations by Poverty
Exposure Metric
% Change in Risk
(95% confidence interval)
ZIP-codes < 8% below
poverty
ZIP-codes > 8% below
poverty
Central site (Daily) 0.30 (-0.52, 1.13) 0.67 (-0.07, 1.42)
Spatial-resolved estimates
without prediction error 0.40 (-0.60, 1.40) 0.90 (0.00, 1.82)
with prediction error 0.38 (-0.61, 1.39) 0.86 (-0.04, 1.78)
Associations between daily ED visits for RESP per 10 μg/m3
increase in previous day PM2.5 ambient concentration, 2001
to 2009.
Exposure Measurement Error?
Smoothing  Berkson-type error
Modeling uncertainty  Classical-type error
Georgia birth records 2001-05 Long-term PM2.5 average
Keller J, Chang HH, Strickland MA, Szpiro A (2017). Epidemiology 28(3):338-345
Exposure Measurement Error?
Bootstrap
Cohort Correction Trimester Estimate Std. Err 95% CI
Restricted None 1 –1.53 0.82 (–3.14, 0.09)
2 –1.57 0.83 (–3.19, 0.06)
3 –2.37 0.78 (–3.89, –0.83)
Parameter 1 –1.55 1.01 (–3.53, 0.43)
2 –1.56 0.98 (–3.50, 0.37)
3 –2.39 0.92 (–4.20, –0.58)
Statewide None 1 0.281 0.54 (–0.78, 1.34)
2 –0.620 0.55 (–1.69, 0.45)
3 –0.660 0.51 (–1.67, 0.35)
Estimated difference in birth weight (in grams) associatedwith 1
µg/m3 higher ambient average PM2.5 during the specified trimester.
Keller J, Chang HH, Strickland MA, Szpiro A (2017). Epidemiology 28(3):338-345
Diarrhea and Environmental Drivers
21 Villages in Ecuador Weekly Diarrhea Incidence
Topographic Data Weather Stations
NSF 1360330 (PI: Remais)
Exposure Assessment for Precipitation
0.25 x 0.25 degree grid of the TRMM 3B42 satellite platform.
Deshpande A, Chang HH, Levy K (2017). Health Related Water Microbiology / Water Microbiology Conference.
Precipitation and Diarrheal Diseases
0.50
0.75
1.00
1.25
1.50
HRE, Dry AC HRE, Wet AC No HRE, Dry AC
ExpectedCountRatio
Expected Count Ratios of Diarrhea by Environmental Condition
in Rural Parishes at Lag of 7 Days
Associations between:
1. Daily counts of diarrheal disease in Esmeraldas, Ecuador
2. Heavy rain fall events (HRE) by antecedent conditions (AC)
Improving Exposure Assessment
• How do combine various data sources?
Monitoring networks
Model simulations
Satellite retrievals
• Analytical challenges
Missing data (spatio-temporal, informative)
Multiple exposures
Large datasets
Exposure prediction error
Accountability Research
Henneman LRF, Chang HH, Liao KJ, Lavoue D, Mulholland JA, Russell AG (2017). Air Quality, Atmosphere & Health DOI 10.1007/s11869-017-0463-2
Impacts of Emission versus Climate
Stowell JD, Kim YM, Gao Y, Fu JS, Chang HH, Liu Y (2017). Environment International, 108:41-50.
Health Effects of Multiple Exposures
X2
Y
X1
X2
Y
X1
YX1 X2
Joint Effects Effect Modification
Mediation
Thank you!
NIEHS R01 ES027892, R21 ES022795, R21 ES023763

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Program on Mathematical and Statistical Methods for Climate and the Earth System Opening Workshop, Projecting Health Impacts of Climate Change: Embracing an Uncertain Future - Howard Chang, Aug 23, 2017

  • 1. Linking Environmental and Health Data for Epidemiologic Research Howard Chang howard.chang@emory.edu Department of Biostatistics and Bioinformatics, Emory University SAMSI CLM Opening Workshop August 2017
  • 2. Health Impact Assessment Analytic framework for evaluating how a policy or program affects population health. Health Data Weather Data 1. Health Effect Estimation Population Projection Climate Simulations 2. Bias Correction 3. Health Impact Projection
  • 3. Health Effects of Environmental Risks Exposures Health Outcomes • Temperature • Air pollution • Heat waves • Wildfire • Heavy rainfall • Pollen • Mold • Salt water intrusion • Mortality • Hospital admissions • Emergency room visits • Adverse birth outcomes • Diarrheal diseases • Vector-born diseases What are the relevant spatial and temporal scale?
  • 4. Challenges in Environmental Epidemiology • Observational and retrospective. • Small effects but ubiquitous exposures. • Data are complex, incomplete, and messy. • Both health and exposure data have spatial and temporal dependence. • Focus on causal inference: bias, measurement error and confounding,
  • 5. Health Effect Estimation – Health Data Administrative Databases • Death and birth certificates • Medicare and hospital billing records • Medical records Advantages • Individual-level data • Centralized and cost efficient Disadvantages • Missing important individual-level confounders • Crude geographical information/history
  • 6. Some Research Interests • Identify susceptible and vulnerable populations. • Improve exposure assessment methods for health effect/impact analyses. • Estimating joint effects of multiple exposures. • Evaluate environmental regulations/policies (accountability) and mitigation strategies.
  • 7. Atlanta Emergency Department Visits • 20-county Atlanta metropolitan area. • Billing records of ED visits between 1993 to 2012. • ≈ 10 million individual records
  • 8. Daily Time-Series Analysis 2002 2004 2006 2008 2010 2000300040005000 Daily Emergency Department Visits in Atlanta Counts 2002 2004 2006 2008 2010 010203040 Daily Maximum Temperature Calendar Date Temperature(Celsius)
  • 9. Daily Time-Series Analysis Daily total ED counts Daily Temperature (e.g. ATL Airport) Seasonal trend Long-term trend Day-of-week Proxies for: Diet Access to care Population health log[𝐸 𝑌𝑡 ] =𝛽𝑋𝑡 + Confounders
  • 10. ED Visits and Temperature Broad Outcome Groups among the Elderly INTERN GI DIA FEI CIRC RESP REN AL INTERN = all internal causes GI = intestinal infections DIA = diabetes FEI = fluid & electrolyte imbalance CIRC = all circulatory diseases RESP = all respiratory diseases RENAL = all renal diseases *Associations of lag 0 TMX and ED visit outcomes based on primary ICD-9 codes *RRs for TMX changes from 27 oC to 32 oC (25th to 75th percentile) Winquist A, Grundstein AJ, Chang HH, Hess J Sarnat SE (2016). Environmental Research 147, 314-323.
  • 11. ED Visits and Heat Waves Heat wave definitions: • Heat wave period = ≥2 consecutive days with daily metric beyond the 98th percentiles. • The first day of a heat wave period treated removed. • Max/Avg/Min temperature and apparent temperature. The added burden of sustained high temperature.
  • 12. ED Visit-Heat Wave, Atlanta 1993-2012 Chen T, Sarnat SE, Grundstein AJ, Winquist A, Chang HH (2017). Environmental Health Perspectives. DOI:10.1289/EHP44
  • 13. Heat Wave Statistics Upper triangle = union days; lower triangle = intersection days Heat Wave Def MAXT MINT AVGT MAXAT MINAT AVGAT MAXT 256 133 122 150 143 MINT 67 (26%) 251 259 232 245 AVGT 81 (61%) 104 (41%) 141 154 147 MAXAT 78 (64%) 82 (32%) 91 (65%) 154 139 MINAT 37 (25%) 96 (41%) 65 (42%) 51 (33%) 139 AVGAT 66 (46%) 105 (43%) 94 (64%) 88 (63%) 75 (54%) Concordance-discordance between heat wave metrics.
  • 14. Preterm Birth-Heat Wave, Atlanta 1994-2006 0.6 1.2 RR(95%ConfidenceInterval) 0.8 1.4 1.0 Daily counts of preterm birth with joint strata of gestational week, maternal race, and maternal education, and offset by the number of fetuses-at-risk of preterm birth on each day. Darrow LA, Strickland MJ, Chang HH (2015) Society for Epidemiologic Research Annual Meeting. Denver, Colorado.
  • 15. Pediatric ED Asthma Visit and Temperature O’Lenick CR, Winquist A, Chang HH, Kramer MR, Mulholland JA, , Grundstein AJ, Sarnat SE (2017) Environmental Research, 156, 132-144.
  • 17. Data Integration for Exposure Assessment Exposure Monitoring Measurement Satellite Imagery Computer Model Simulation Meteorology Physical Variables
  • 18. Fine-Scale Temperature Assessment Daytime Nighttime 1 km spatial resolution over metropolitan Houston for daytime (left; 4:00 pm) and nighttime (right; 12:00 am), created with the HRLDAS model. Monaghan AJ, Hu L, Brunsell NA, Barlage M, Wilhelmi OV (2014). Journal of Geophysical Research: Atmospheres, 119(11), 6376-6392.
  • 19. Estimated Average PM2.5 Levels in 2001 (𝜇𝑔/𝑚3 ) 1km x 1km spatial grid in 20-county Atlanta
  • 20. Are Finer Exposure Estimates Better? CMS: central monitoring station PWA: kriging + population weighted average FSD: data fusion
  • 21. Health Effect Associations by Poverty Exposure Metric % Change in Risk (95% confidence interval) ZIP-codes < 8% below poverty ZIP-codes > 8% below poverty Central site (Daily) 0.30 (-0.52, 1.13) 0.67 (-0.07, 1.42) Spatial-resolved estimates without prediction error 0.40 (-0.60, 1.40) 0.90 (0.00, 1.82) with prediction error 0.38 (-0.61, 1.39) 0.86 (-0.04, 1.78) Associations between daily ED visits for RESP per 10 μg/m3 increase in previous day PM2.5 ambient concentration, 2001 to 2009.
  • 22. Exposure Measurement Error? Smoothing  Berkson-type error Modeling uncertainty  Classical-type error Georgia birth records 2001-05 Long-term PM2.5 average Keller J, Chang HH, Strickland MA, Szpiro A (2017). Epidemiology 28(3):338-345
  • 23. Exposure Measurement Error? Bootstrap Cohort Correction Trimester Estimate Std. Err 95% CI Restricted None 1 –1.53 0.82 (–3.14, 0.09) 2 –1.57 0.83 (–3.19, 0.06) 3 –2.37 0.78 (–3.89, –0.83) Parameter 1 –1.55 1.01 (–3.53, 0.43) 2 –1.56 0.98 (–3.50, 0.37) 3 –2.39 0.92 (–4.20, –0.58) Statewide None 1 0.281 0.54 (–0.78, 1.34) 2 –0.620 0.55 (–1.69, 0.45) 3 –0.660 0.51 (–1.67, 0.35) Estimated difference in birth weight (in grams) associatedwith 1 µg/m3 higher ambient average PM2.5 during the specified trimester. Keller J, Chang HH, Strickland MA, Szpiro A (2017). Epidemiology 28(3):338-345
  • 24. Diarrhea and Environmental Drivers 21 Villages in Ecuador Weekly Diarrhea Incidence Topographic Data Weather Stations NSF 1360330 (PI: Remais)
  • 25. Exposure Assessment for Precipitation 0.25 x 0.25 degree grid of the TRMM 3B42 satellite platform. Deshpande A, Chang HH, Levy K (2017). Health Related Water Microbiology / Water Microbiology Conference.
  • 26. Precipitation and Diarrheal Diseases 0.50 0.75 1.00 1.25 1.50 HRE, Dry AC HRE, Wet AC No HRE, Dry AC ExpectedCountRatio Expected Count Ratios of Diarrhea by Environmental Condition in Rural Parishes at Lag of 7 Days Associations between: 1. Daily counts of diarrheal disease in Esmeraldas, Ecuador 2. Heavy rain fall events (HRE) by antecedent conditions (AC)
  • 27. Improving Exposure Assessment • How do combine various data sources? Monitoring networks Model simulations Satellite retrievals • Analytical challenges Missing data (spatio-temporal, informative) Multiple exposures Large datasets Exposure prediction error
  • 28. Accountability Research Henneman LRF, Chang HH, Liao KJ, Lavoue D, Mulholland JA, Russell AG (2017). Air Quality, Atmosphere & Health DOI 10.1007/s11869-017-0463-2
  • 29. Impacts of Emission versus Climate Stowell JD, Kim YM, Gao Y, Fu JS, Chang HH, Liu Y (2017). Environment International, 108:41-50.
  • 30. Health Effects of Multiple Exposures X2 Y X1 X2 Y X1 YX1 X2 Joint Effects Effect Modification Mediation
  • 31. Thank you! NIEHS R01 ES027892, R21 ES022795, R21 ES023763