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Sampling
  review

 Jardim, E.,
Prista, N. &
  Dias, M.


Introduction   Portuguese Market and On-board
Data

Methods
                    Sampling Effort Review
                  Working document presented to PGCCDBS, 7-11 February 2011
Results

Conclusions
                           Jardim, E., Prista, N. & Dias, M.


                                   February 5, 2011
Sampling
  review

 Jardim, E.,                      Outline
Prista, N. &
  Dias, M.


Introduction

Data
               1   Introduction
Methods

Results

Conclusions    2   Data

               3   Methods

               4   Results

               5   Conclusions
Sampling
  review

 Jardim, E.,                                   Introduction
Prista, N. &
  Dias, M.


Introduction   The implementation of the metier approach resulted in:
Data
                   a decrease in the precision of the length frequencies
Methods
                   estimates by species, due to the spread of sampling effort
Results
                   to new species and the reduction of trips sampled.
Conclusions
                   an increase in the number of strata to be sampled
                   on-board
               The objective of this work is to optimize sampling effort by
               computing the number of samples required to achieve the
               precision levels defined by the DCF:
                   for length frequencies of the landings sampled at the
                   market
                   for total discards sampled on-board
Sampling
  review

 Jardim, E.,                                              Data
Prista, N. &
  Dias, M.


Introduction

Data

Methods
                   On market:
Results                number of individuals estimated by trip
Conclusions
                       data from 2009-2010,
                       by REGION, GEAR, SPECIES & QUARTER
                   On board:
                       weight discarded by trip
                       data from 2004-2010
                       by METIER (OTBDEF, OTBCRU) & QUARTER
               Data is scarce and the breakdown by metier makes it
               even scarcer, it was necessary to aggregate.
Sampling
  review

 Jardim, E.,                                          Methods
Prista, N. &
  Dias, M.


Introduction

Data
                   Model CV = f (N) using exponential decay models (N
Methods
                   being number of samples)
Results

Conclusions
                   Compute N to achive 12.5% CV for market sampling or
                   20% for on-board
                   Compute 95% percentile of N as an indicator of a high
                   probability to achieve the objective and cover species with
                   more variability than average
                   Review the sampling plans
               (Lots of technical details and statistical mambo-jambo to be
               provided if requested)
Sampling
  review

 Jardim, E.,                Data aggregation for
Prista, N. &
  Dias, M.                       market sampling
Introduction

Data

Methods        Each pair used in model refers to
Results
                   the CV of the total number of individuals sampled
Conclusions        the number of samples collected from which the CV above
                   was computed
               Each pair was computed by GEAR (aggregation of
               metiers), QUARTER, REGION & SPECIES
               Each model was fit to distinct dimensions of the data
               collapsing all other dimensions
                   for each REGION
                   for each GEAR
                   for each combination of REGION and GEAR
Sampling
  review

 Jardim, E.,                                 Example models for
Prista, N. &
  Dias, M.                                      market sampling
Introduction

Data
                                                             Trammel nets

Methods
                       0.7
                                 q




Results
                       0.6



                                 q




Conclusions
                                                                                                 exp
                                                                                                 strexp
                       0.5




                                                                                                 exp log
                                                                                                 strexp log
                                     q
                                     q




                                 q
                       0.4




                                             q


                                     q
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               TOTCV




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                             0               5                    10                        15                    20

                                                                  N
Sampling
  review

 Jardim, E.,   Models for on-board
Prista, N. &
  Dias, M.                sampling
Introduction

Data

Methods

Results

Conclusions
Sampling
  review

 Jardim, E.,          Preliminary conclusions
Prista, N. &
  Dias, M.               for market sampling
Introduction
                    Region   Metier              SampEff.2010   SampEff.2011
Data            1   North    FPO MOL >=29 0 0              5            17
                2   North    GNS DEF 80-99 0 0             2            21
Methods         3   North    GNS DEF 60-79 0 0             3            21
                4   North    GTR DEF >=100 0 0             8            12
Results
                5   North    LLS DEF 0 0 0                 1            17
Conclusions     6   North    OTB DEF 65-69 0 0             6            18
                7   North    PS SPF >=16 0 0               7            13
                8   North    TBB CRU >=20 0 0              1            17
                9   Center   FPO MOL >=29 0 0              5            17
               10   Center   GNS DEF 80-99 0 0             3            19
               11   Center   GTR DEF >=100 0 0             7             4
               12   Center   LLD LPF 0 0 0                 2             2
               13   Center   LLS DEF 0 0 0                 2            17
               14   Center   LLS DWS 0 0 0                 2            17
               15   Center   OTB CRU >=70 0 0              6             4
               16   Center   OTB CRU 55-59 0 0
               17   Center   OTB DEF 65-69 0 0             1             4
               18   Center   PS SPF >=16 0 0               5            13
               19   South    FPO MOL >=29 0 0              5            17
               20   South    GNS DEF 80-99 0 0             2            21
               21   South    LLD LPF 0 0 0                 1             1
               22   South    LLS DEF 0 0 0                 1            17
               23   South    OTB CRU >=70 0 0              5            18
               24   South    OTB CRU 55-59 0 0
               25   South    OTB DEF 65-69 0 0             2            18
               26   South    PS SPF >=16 0 0               2            13
               27   Total                                 84           338
Sampling
  review

 Jardim, E.,                 Preliminary conclusions
Prista, N. &
  Dias, M.                    for on-board sampling
Introduction

Data

Methods            Model point estimate is 15 samples per quarter for both
Results
                   metiers
Conclusions
                   Sampling theory estimate is 18-20 samples per quarter
                   95 percentile is 48 samples per quarter
                   Increase sampling effort up to 192 trips per year for each
                   metier
               The sampling effort is not applicable due to high costs
               and lack of human resources. In 2011 on-board sampling
               effort will be increased up to the maximum possible,
               taking into account other metiers and resources available.
Sampling
  review

 Jardim, E.,   The End
Prista, N. &
  Dias, M.


Introduction

Data

Methods

Results

Conclusions
Sampling
  review

 Jardim, E.,                             Details: codes
Prista, N. &
  Dias, M.


Introduction

Data

Methods

Results        N, C, S = Norte, Centro Sul
Conclusions
               OTB, PS, GTR, GNS, FPO, LLS = trawl, purse seine,
               trammel nets, gill nets, traps, longliners
               Models: exp, strexp, exp log, strexp log = exponential,
               streched exponential, exponential with log errors, streched
               exponential with log errors.
Sampling
  review

 Jardim, E.,                        Details: Methods
Prista, N. &
  Dias, M.
               Models are fit to distinct data breakdowns, All, by
Introduction
               REGION, by GEAR, by REGION & GEAR = 60 models
Data

Methods
               (only market)
Results        Models are fit to both metiers merged (only on-board)
Conclusions    Fits are analysed by visual inspection of residuals, AIC,
               likelihood, precision of parameters, precision of the
               estimated number of samples to achieve objective.
               Fits selected are averaged considering the inverse of the
               residuals variance (only market)
               Number of samples are allocated considering the highest
               number for each combination of GEAR & REGION (only
               market).
               Number of samples are estimated by the best model as
               well as with sampling theory (only on-board).
Sampling
  review

 Jardim, E.,              Details CV (µ) = CV (τ )
Prista, N. &
  Dias, M.


Introduction

Data

Methods

Results
                                 τ =C ∗µ
                                 ˆ     ˆ
Conclusions



                           var (ˆ) = C 2 ∗ var (ˆ)
                                τ               µ

                          C 2 ∗ var (ˆ)
                                     µ       var (ˆ)
                                                  µ
               CV (ˆ) =
                   τ                    =            = CV (ˆ)
                                                           µ
                            C ∗µ ˆ            µ
                                              ˆ
Sampling
  review

 Jardim, E.,                               Details τ & var (τ )
Prista, N. &
  Dias, M.


Introduction   Consider N the number of individuals, i = 1 . . . l to index
Data           length classes and j = 1 . . . s to index sampled trips.
Methods

Results                                    N=         Ni
Conclusions                                       i

                    Σ = var (N) =        var (Ni ) + 2 ∗                 cov (Ni , Nj )
                                     i                       i   j=i+1

                                          Ni =        Nij
                                                  j

                                                    Nij ∗w
                                                 j ( wj      − Ni )2
                                 var (Ni ) =
                                                 s ∗ (s − 1)
Sampling
  review

 Jardim, E.,                 Details DPUE & var (DPUE )
Prista, N. &
  Dias, M.


Introduction

Data

Methods        Let i be the index of the number of hauls sampled in trip j
Results        (i = 1, 2, .., nj , j = 1, 2, .., nt ), d be total weight discarded (in
Conclusions
               kg) and h be the haul duration (in hours)
                             nj di,j
                             i=1 hi,j
               DPUE j =       nj
               and          nt
                                  DPUE j
               DPUE =       i=1
                                  nt
                                        nt
                                        j=1   (DPUEj −DPUE )2
               VAR(DPUE ) =                    nt (nt −1)
Sampling
  review

 Jardim, E.,   Details residuals of
Prista, N. &
  Dias, M.         on-board model
Introduction

Data

Methods

Results

Conclusions
Sampling
  review

 Jardim, E.,                                                  Details residuals of
Prista, N. &
  Dias, M.                                              market model for trammel
Introduction                                                                  nets
Data

Methods                           30
                                                                             EXP                                                                                                              STREXP                                                                                                        EXP LOG                                                                                                       STREXP LOG




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Results




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                                                                                                                                                                                                                                                                                                                                                                                    −3
                                                  0.10            0.15            0.20               0.25             0.30                             0.10                 0.15              0.20               0.25            0.30                                             0.10                      0.15                       0.20                                              0.10                        0.15                      0.20                0.25

                                                                         mod0$pred                                                                                                        mod1$pred                                                                                                             mod2$pred                                                                                                     mod3$pred




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                                         0                  20                   40                  60                 80                              0                      20                   40                   60               80                             0                       20                   40                       60           80                           0                          20                 40                     60          80

                                                                             Index                                                                                                              Index                                                                                                                Index                                                                                                         Index



                                                                 Normal Q−Q Plot                                                                                                    Normal Q−Q Plot                                                                                                    Normal Q−Q Plot                                                                                                   Normal Q−Q Plot
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                                                                  Theoretical Quantiles                                                                                               Theoretical Quantiles                                                                                            Theoretical Quantiles                                                                                             Theoretical Quantiles

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Portuguese Market and On-board Sampling Effort Review

  • 1. Sampling review Jardim, E., Prista, N. & Dias, M. Introduction Portuguese Market and On-board Data Methods Sampling Effort Review Working document presented to PGCCDBS, 7-11 February 2011 Results Conclusions Jardim, E., Prista, N. & Dias, M. February 5, 2011
  • 2. Sampling review Jardim, E., Outline Prista, N. & Dias, M. Introduction Data 1 Introduction Methods Results Conclusions 2 Data 3 Methods 4 Results 5 Conclusions
  • 3. Sampling review Jardim, E., Introduction Prista, N. & Dias, M. Introduction The implementation of the metier approach resulted in: Data a decrease in the precision of the length frequencies Methods estimates by species, due to the spread of sampling effort Results to new species and the reduction of trips sampled. Conclusions an increase in the number of strata to be sampled on-board The objective of this work is to optimize sampling effort by computing the number of samples required to achieve the precision levels defined by the DCF: for length frequencies of the landings sampled at the market for total discards sampled on-board
  • 4. Sampling review Jardim, E., Data Prista, N. & Dias, M. Introduction Data Methods On market: Results number of individuals estimated by trip Conclusions data from 2009-2010, by REGION, GEAR, SPECIES & QUARTER On board: weight discarded by trip data from 2004-2010 by METIER (OTBDEF, OTBCRU) & QUARTER Data is scarce and the breakdown by metier makes it even scarcer, it was necessary to aggregate.
  • 5. Sampling review Jardim, E., Methods Prista, N. & Dias, M. Introduction Data Model CV = f (N) using exponential decay models (N Methods being number of samples) Results Conclusions Compute N to achive 12.5% CV for market sampling or 20% for on-board Compute 95% percentile of N as an indicator of a high probability to achieve the objective and cover species with more variability than average Review the sampling plans (Lots of technical details and statistical mambo-jambo to be provided if requested)
  • 6. Sampling review Jardim, E., Data aggregation for Prista, N. & Dias, M. market sampling Introduction Data Methods Each pair used in model refers to Results the CV of the total number of individuals sampled Conclusions the number of samples collected from which the CV above was computed Each pair was computed by GEAR (aggregation of metiers), QUARTER, REGION & SPECIES Each model was fit to distinct dimensions of the data collapsing all other dimensions for each REGION for each GEAR for each combination of REGION and GEAR
  • 7. Sampling review Jardim, E., Example models for Prista, N. & Dias, M. market sampling Introduction Data Trammel nets Methods 0.7 q Results 0.6 q Conclusions exp strexp 0.5 exp log strexp log q q q 0.4 q q q q TOTCV q q q q q q q 0.3 q q q q q q q q q q q q q q 0.2 q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q 0.1 q q q q q q q q q q q q q 0.0 q 0 5 10 15 20 N
  • 8. Sampling review Jardim, E., Models for on-board Prista, N. & Dias, M. sampling Introduction Data Methods Results Conclusions
  • 9. Sampling review Jardim, E., Preliminary conclusions Prista, N. & Dias, M. for market sampling Introduction Region Metier SampEff.2010 SampEff.2011 Data 1 North FPO MOL >=29 0 0 5 17 2 North GNS DEF 80-99 0 0 2 21 Methods 3 North GNS DEF 60-79 0 0 3 21 4 North GTR DEF >=100 0 0 8 12 Results 5 North LLS DEF 0 0 0 1 17 Conclusions 6 North OTB DEF 65-69 0 0 6 18 7 North PS SPF >=16 0 0 7 13 8 North TBB CRU >=20 0 0 1 17 9 Center FPO MOL >=29 0 0 5 17 10 Center GNS DEF 80-99 0 0 3 19 11 Center GTR DEF >=100 0 0 7 4 12 Center LLD LPF 0 0 0 2 2 13 Center LLS DEF 0 0 0 2 17 14 Center LLS DWS 0 0 0 2 17 15 Center OTB CRU >=70 0 0 6 4 16 Center OTB CRU 55-59 0 0 17 Center OTB DEF 65-69 0 0 1 4 18 Center PS SPF >=16 0 0 5 13 19 South FPO MOL >=29 0 0 5 17 20 South GNS DEF 80-99 0 0 2 21 21 South LLD LPF 0 0 0 1 1 22 South LLS DEF 0 0 0 1 17 23 South OTB CRU >=70 0 0 5 18 24 South OTB CRU 55-59 0 0 25 South OTB DEF 65-69 0 0 2 18 26 South PS SPF >=16 0 0 2 13 27 Total 84 338
  • 10. Sampling review Jardim, E., Preliminary conclusions Prista, N. & Dias, M. for on-board sampling Introduction Data Methods Model point estimate is 15 samples per quarter for both Results metiers Conclusions Sampling theory estimate is 18-20 samples per quarter 95 percentile is 48 samples per quarter Increase sampling effort up to 192 trips per year for each metier The sampling effort is not applicable due to high costs and lack of human resources. In 2011 on-board sampling effort will be increased up to the maximum possible, taking into account other metiers and resources available.
  • 11. Sampling review Jardim, E., The End Prista, N. & Dias, M. Introduction Data Methods Results Conclusions
  • 12. Sampling review Jardim, E., Details: codes Prista, N. & Dias, M. Introduction Data Methods Results N, C, S = Norte, Centro Sul Conclusions OTB, PS, GTR, GNS, FPO, LLS = trawl, purse seine, trammel nets, gill nets, traps, longliners Models: exp, strexp, exp log, strexp log = exponential, streched exponential, exponential with log errors, streched exponential with log errors.
  • 13. Sampling review Jardim, E., Details: Methods Prista, N. & Dias, M. Models are fit to distinct data breakdowns, All, by Introduction REGION, by GEAR, by REGION & GEAR = 60 models Data Methods (only market) Results Models are fit to both metiers merged (only on-board) Conclusions Fits are analysed by visual inspection of residuals, AIC, likelihood, precision of parameters, precision of the estimated number of samples to achieve objective. Fits selected are averaged considering the inverse of the residuals variance (only market) Number of samples are allocated considering the highest number for each combination of GEAR & REGION (only market). Number of samples are estimated by the best model as well as with sampling theory (only on-board).
  • 14. Sampling review Jardim, E., Details CV (µ) = CV (τ ) Prista, N. & Dias, M. Introduction Data Methods Results τ =C ∗µ ˆ ˆ Conclusions var (ˆ) = C 2 ∗ var (ˆ) τ µ C 2 ∗ var (ˆ) µ var (ˆ) µ CV (ˆ) = τ = = CV (ˆ) µ C ∗µ ˆ µ ˆ
  • 15. Sampling review Jardim, E., Details τ & var (τ ) Prista, N. & Dias, M. Introduction Consider N the number of individuals, i = 1 . . . l to index Data length classes and j = 1 . . . s to index sampled trips. Methods Results N= Ni Conclusions i Σ = var (N) = var (Ni ) + 2 ∗ cov (Ni , Nj ) i i j=i+1 Ni = Nij j Nij ∗w j ( wj − Ni )2 var (Ni ) = s ∗ (s − 1)
  • 16. Sampling review Jardim, E., Details DPUE & var (DPUE ) Prista, N. & Dias, M. Introduction Data Methods Let i be the index of the number of hauls sampled in trip j Results (i = 1, 2, .., nj , j = 1, 2, .., nt ), d be total weight discarded (in Conclusions kg) and h be the haul duration (in hours) nj di,j i=1 hi,j DPUE j = nj and nt DPUE j DPUE = i=1 nt nt j=1 (DPUEj −DPUE )2 VAR(DPUE ) = nt (nt −1)
  • 17. Sampling review Jardim, E., Details residuals of Prista, N. & Dias, M. on-board model Introduction Data Methods Results Conclusions
  • 18. Sampling review Jardim, E., Details residuals of Prista, N. & Dias, M. market model for trammel Introduction nets Data Methods 30 EXP STREXP EXP LOG STREXP LOG 30 30 30 20 20 Frequency Frequency Frequency Frequency Results 20 20 10 10 5 10 10 5 5 Conclusions 0 0 0 0 −0.3 −0.2 −0.1 0.0 0.1 0.2 0.3 0.4 −0.3 −0.2 −0.1 0.0 0.1 0.2 0.3 0.4 −3 −2 −1 0 1 −3 −2 −1 0 1 mod0$res mod1$res mod2$res mod3$res 0.4 0.4 1 q q q q 1 q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q qq q q q q q q q q q q q q q q q q q q 0.2 q q q q q 0 q q q 0.2 0 q q q q q q q q q q q q q q q q q q q q qq q q q q q mod0$res mod1$res mod2$res mod3$res q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q −1 −1 q q q q q q q q q q q q q q q q q q q q q qq q q 0.0 q q q q q q q 0.0 q q q q q q q q q q q q q q q q q q q q q q q q q q q q qq q q q q q q q q q q q q q q q q q q q q q q q q q q q q q q −2 q −2 q q q q q q q q q q q q q q q q −0.2 q q q q q −0.2 q q q −3 q q q q −3 0.10 0.15 0.20 0.25 0.30 0.10 0.15 0.20 0.25 0.30 0.10 0.15 0.20 0.10 0.15 0.20 0.25 mod0$pred mod1$pred mod2$pred mod3$pred q q q q q q q q q qq q q q q qq q 3 1 q 3 1 q q q q q qq q qq q qq q q qq q q q q q q q qq q q qq q q q q q qqq q q q q q q q scale(mod0$res) scale(mod1$res) scale(mod2$res) scale(mod3$res) q q q q q q q q q q q qq q q q q q q q q q q q q q q 0 q q q qq q 2 q q q q 2 q q q q q q q q q q q q qq q q q q q q q q q q q qq qq qq q q q q q q q q q q q qq q q q q qq q q q −1 q q q q 1 q q q q q q q 1 qq q q q q q q q q q q q q q q q q q q qq q q q qqq q q q q q q qq q q q q q −2 q q q q q qq qq q q q q q 0 q q q q q 0 q q q q q q q q q q q q q q q q q q q q q q q q qq q q q q q q q q q q q qq qq q qq qq q q q −3 qq q q q q q q q q q q q q q q q q q q q q q q q q q −4 q q q q −2 q −2 q q q q q q −5 0 20 40 60 80 0 20 40 60 80 0 20 40 60 80 0 20 40 60 80 Index Index Index Index Normal Q−Q Plot Normal Q−Q Plot Normal Q−Q Plot Normal Q−Q Plot 0.4 0.4 1 q q q q 1 q q q qq q q q q qq q q q qq qq q qqq q q q q q qqqq q q qqq qqqqq qqq qq qqq q Sample Quantiles Sample Quantiles Sample Quantiles Sample Quantiles qqq qq qqq qqq qqq qqq qq qqqq qq qqqq 0.2 qqq qqq qqq qqq 0 qqq qq 0.2 0 qq qq qq qq qq q qqq qqq qqq qq q qq qqq qq q qq qqq q qqq qq q qq q qq q qq q qq q qq q qq qq qq qq qq qq q qqq qqq qq −1 −1 q qq q q qqq qq q q qq q qqq q qqq qqq qqq 0.0 qq qq qq qqq qqq 0.0 qq qq q q qqq qqq qqq qq qqqq qqqq qqqq q qq qq qqqq qqqq q qqq qq qq q qq q qq qq qqq qq −2 −2 qqq qqq q qq qq q qq q q qq −0.2 q qqq q −0.2 q q q −3 q q q q −3 −2 −1 0 1 2 −2 −1 0 1 2 −2 −1 0 1 2 −2 −1 0 1 2 Theoretical Quantiles Theoretical Quantiles Theoretical Quantiles Theoretical Quantiles