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Predictive factors of the effect of adjuvant
systemic treatments in breast cancer
R. Arriagada 1-3
, S. Michiels 2
1
Karolinska Institutet and University
Hospital, Stockholm, Sweden
2
Institut Gustave-Roussy
3
Université de Paris-Sud, France
Predictive factors of the effect of
adjuvant systemic treatments
• Why only systemic treatments ?
• Hormonal receptors
• HER2
• Molecular classifications
• Genomics signatures
• Methodological considerations
Radiotherapy in invasive breast cancer
Isolated loco-regional recurrences in the trials of
any type of radiotherapy (RT) versus no RT
Isolated local recurrence
Absolute difference in risk of
isolated local recurrence: 20%,
mostly within the first 5 years.
EBCTCG, Lancet 366: 2087-2106,
2005
Prognostic and predictive factors
• Prognostic factors: those that in multivariate
analysis show an independent effect on the
studied event
• May be studied in large retrospective series
• Predictive factors: those that are shown to be
significantly related to treatment effect
• They should be studied in large randomised
series testing the treatment (subgroup analysis),
or taking tumour response as event (advanced
disease or neo-adjuvant setting)
Hormonal receptors and hormonoresistance
• ER: good predictors but not enough
• Still about 50% of patients with ER+ are non-
responders
• About 10% of patients with ER- are responders
• ER and PR are not enough
• Others markers, pathways and cross-talks
Variations of treatment effects
according to covariates
Intrinsic resistance to hormonal treatments
HR N Rate 95% CI
ER+ PR+ 102 / 319 32 % 27 - 37
( ER - PR + 15 / 26 58 % 37 – 77 )
ER + PR - 151 / 223 68 % 61 - 74
ER - PR - 179 / 197 91 % 86 - 94
* Osborne K. Breast, 1991
Hormonoresistance breast cancer
Rationale
• Two-thirds of tumours have positive ER and/or PR
• ER good predictor of tumour response (50%), but
only a part of the puzzle
- ERα
- ERβ (Gustafsson et al)
- Other factors (EGFR / HER2 receptors)
- Crosstalk ER and GFR pathways
Hormonoresistance breast cancer
Rationale
• EGFR / HER2 pathway may play a role in
resistance to SERMs (e.g. tamoxifen)
• ER complex with other transcription factors (Fos
and Jun proteins), alter gene transcription (cyclyn
D, ILGF-1,…)
• P53 mutation: poor response to tamoxifen
Hormonoresistance
Tamoxifen: largely used for 30 years
Hormonoresistance
• Loss of ER expression
• Modification of expression oestrogen-related
genes such as those coding GF or GF receptors
• Altered expression of transcriptional cofactors
associated with ER α
• Deterioration of ER α circulation
• Implication of ER β
• Alterations of tamoxifen metabolism
• ……
Hormonoresistance
Tamoxifen: gold standard for 30 years
• Agonistic and antagonistic effects
• Prevents the binding of oestrogen to its receptor
• Intrinsic (50% of ER+) and acquired resistance
• Agonistic effect: increase some side effects
• Adjuvant use for 5 years (however, some patients
could benefit from a longer treatment)
• More accurate and selective predictive factors are
needed.
Hormonoresistance
Anti-aromatase inhibitors (AIs)
• Exemestane, anastrazole, letrozole
• More effective than TAM in postmenopausal pts
• Optimal treatment and sequencing to be defined
• Adverse effects: joint disorders
• ER+, HER2+ : AIs ?
• ER+, PR+ : sequence of TAM and AIs ?
Hormonoresistance
Fulvestrant
• Steroidal ER antagonist with no agonist effect
• It binds, blocks and accelerates degradation of
ER protein
• As effective as anastrazole and tamoxifen in
advanced ER+ breast cancer
• Well tolerated
• Lacks cross-resistance with TAM and AIs
• Sequential regimens ?
Hormonoresistance
Additional predictive factors
• ERα + and PR+ only used for practical indications
• Functional genomics: subgroups of gene profile
(e.g. Paik et al)
• Proteomics: study complex protein mixtures with
high resolution, SELDI-TOF-MS and antibody
array (Linderholm et al): 5 new potential
biomarkers
Hormonoresistance
Practical implications of prediction
• Tumours resistant to TAM could be sensitive to
AIs and viceversa
• The same for the indication of Fulvestrant
• Definition of optimal sequencing (BIG 01-98)
• Knowledge about mechanisms of resistance: new
drugs or treatment of hormonal resistance
J 0
Frozen
biopsy
US
PET*
MRI
Frozen
biopsy
US
PET*
MRI
1 month
Surgery at
4 months if
OR < 50%
Surgery at 6 months
Frozen sample
US
PET*
MRI
US
PET*
MRI
* : optional
CARMINA: Neo-adjuvant study
T2 - 4 N0-3, M0 patients
Anastrozole or fulvestrant
5 yrs adjuvant
hormonal
treatment
Domain Function Homology
A/B The regulatory domain 18%
C The DNA-binding domain 97%
D The hinge 30%
E The ligand-binding domain 59%
F The F region 18%
Oestrogen receptor family
Human Estrogen Receptor α: 6q25.1
Human Estrogen Receptor β : 14q22-24
A/B C D E F -COOHNH2-
1 148 214 304 500 530
NH2- A/B C D E F -COOH
1 185 251 355 549 595
• In ductal cells of the mammary gland, ERα and
ERβ oppose each other on proliferation
• The proliferative response to oestrogens is
determined by the ratio of ERα / ERβ
• Functions of ERβ in the breast are probably
related to both its anti-proliferative and its
pro-differentiation functions
• Breast cancer in postmenopausal women:
 high expression of ERα (cancer cells and
normal ducts)
 indicate a normal elevation of ERα in the
absence of its ligand, estradiol
Oestrogen receptor family I
• ERα expression in normal postmenopausal
breast is not elevated
• ERβ expressed > 60% of breast epithelial cells
• In some women, ERβ is not detected but the
splice variant ERβ cx may be very abundant
• Breast cancer sections showed that ERβ is lost
and ERα is gained as we go from normal
tissue to cancer
• A decreased level of ERβ mRNA may be
associated with breast tumourigenesis
• DNA methylation: important mechanism for
ERβ gene silencing in breast cancer
Oestrogen receptor family II
Pharmacogenetic Tools (TAM)
Efficacy
• Polymorphism of TAM metabolising genes :
– CYP2D6 : TAM OH-Tam, N-desmethylTam⇨ ⇨
4 OH-N-desmethylTam (endoxifen)
• Antidepressant (selective serotonin re-uptake
inhibitors), currently used for hot flushes linked
to TAM, are CYP2D6 inhibitors.
• Plasma concentration of Endoxifen ⇩ if CYP2D6
*4/*4 genotype or paroxetin use.
Goetz et al, 2005,2007; Jin et al, 2005; Borges et al, 2006; Wegman et al, 2007
• AGE
• Hormonal receptors
• HER2
• Others ?
Adjuvant chemotherapy effect
Predictive factors
Variations of treatment effects according to
covariates
Intrinsic resistance to chemotherapy
IBCSG study: 1275 pts N- , periop CT
Factor N HR (CT vs no) P (Cox)
Grade 1 200 2.11 0.04
2 519 0.76
3 432 0.75
ER + 608 0.87 0.01
- 379 0.58
PR + 459 0.67 0.03
PR - 466 0.80
* Neville et al, JCO 10: 696-705, 1992
Variations of treatment effects according to
covariates
Adjuvant setting: Hormonal receptors
• In more recent randomised data, HR+ appears as a
marker of intrinsic chemoresistance:
♦ French studies *
♦ IBCSG IX study **
* Arriagada R et al. Ann Oncol, 13: 1378-86, 2002
Arriagada R et al. Acta Oncol, 44: 458-66, 2005
** IBCSG JNCI 94: 1054-1065, 2002
Variations of treatment effects
according to covariates
Chemotherapy
• Drug type: anthracycline vs CMF-like
regimens (EBCTCG)
• Anthracycline dose: Belgian and French trials*
• Hormonal receptors: French study**
• Age (EBCTCG)
* Piccart M et al, JCO 19: 3103-10, 2001; Bonneterre J et al,
JCO 19: 602-11, 2001
** Arriagada R et al. Acta Oncol 44: 458-66, 2005
DFS according to ER
ERPoor 27/79 41/76 -10.2 16.8
ER++ 47/157 63/159 -9.2 27.4
ER+++ 85/250 84/249 -0.2 42.2
Total 159/486 188/484 -19.6 86.4
Category CT NoCT O-E Variance (CT:NoCT) ( SD)
No.Events/No.Entered RelativeRisk RiskRedn
CTeffect2P=0.04
CTbetter|NoCTbetterTestforheterogeneity:2P=0.09
Testfortrend:2P=0.03
20 % 10
0.0 0.5 1.0 1.5 2.0
Trend
P = 0.03
Arriagada R et al. Acta Oncol 44: 458-66, 2005
DFS according to ER
Interaction
P = 0.005
Comforti R et al. Ann Oncol (in press)
DFS in ER- (CT vs no CT)
Interaction
P = 0.005
Comforti R et al. Ann Oncol (in press)
DFS according to HER2
Interaction
P = 0.34
Comforti R et al. Ann Oncol (in press)
DFS according to molecular
subclassification
Interaction
P = 0.076
Comforti R et al. Ann Oncol (in press)
Overcoming drug resistance
Drug Doses
Lower doses of anthracyclines have a lower effect
than higher doses
1. CALGB *
2. Belgian trial **
3. French trial ***
4. Counterpart: AML ?
* Budman et al. JNCI 90: 1205-11, 1998
** Piccart et al. JCO 19: 3103-10, 2001
*** Bonneterre et al. JCO 19: 602-11, 2001
**** Ann Oncol 14: 663-5, 2003
Adjuvant anthracyclin-based CT
HER2 as a prognostic factor
Pritchard KI et al. N Engl J Med 354: 2103-11, 2006
Adjuvant anthracyclin-based CT
HER2 as a predictive factor
Pritchard KI et al. N Engl J Med 354: 2103-11, 2006
Adjuvant trastuzumab
HER2
• HER2 +++ predictive of treatment effect
• 0 / 1 effect ? Determinism ?
• NSABP-31: HER++ FISH (–) also a similar effect
• New trial for these patients
• BETH trial: adding bevacizumab for N+, HER2+++
Piccart M et al. N Engl J Med 353: 1659-72,
HERA trial
Definition of new predictive factors
Genomics / Proteomics
1. Knowledge about the human genoma
2. Knowledge about functional genes
3. Investigation of gene expression: proteins
4. Technical facilities: Micro-arrays
1. Frozen tissues
2. Fresh tissues
These investigations will be introduced in
prospective randomised trials (e.g. MINDACT)
Definition of new predictive factors
Genomics / Micro-arrays
1. Determination of 25,000 genes
2. Selection of a genetic profile (or signature)
based on 70 genes
3. Used in limited database and evaluated as a
prognostic factor *
4. The introduction in randomised trials will allow
to evaluate their predictive value
* van’t der Veer L et al. Nature, 2002
Van der Vijver M et al. NEJM, 2003
NSABP 21-gene RS (Oncotype DX)
Tam versus TAM + CT (CMF or MF)
651 pts
DMF interval
A) Total
B) Low risk
C) Intermediate
D) High risk
(25 %)
Paik S et al.
J Clin Oncol
24: 2006
Definition of new predictive factors
BIG/TRANSBIG: Mindact
US Intergroup TAILORx trial
• Thousands of N- patients to be included
• Europe: Amsterdam signature
• US: Oncotype
• Randomising adjuvant CT and HT
• Expensive +++
• Feasibility ?
Prognostic signature challenges
C. Sotiriou (Brussels)
• 10 – 20% discordance between labs
• Molecular classification: suboptimal
reproducibility
• Fine-tuning needed
• Very small gene overlap
• Some validations
• Most prognostic genes are markers of
proliferation
Statistical challenges related to
micro-chips
Hopes and false positive results
S. Michiels, S. Koscielny,
T. Boulet, C. Hill
Biostatistics and Epidemiology Department
16 April 2007
Some issues
Molecular signature
• Limited number of genes defining patient groups
• Predictive signature for a defined metastatic risk
assumes the existence of an unique genetic
combination for this risk
The old story of numbers
• Analysed series with a small number of patients and
thousands of covariates
• Statistical power issues, interpretation and results
validation
Taille de l'échantillon d'apprentissage
Tauxdemauvaisesclassifications
20 40 60 80 100
0.20.30.40.50.6
Prediction quality
95% CI
Mean rate of
misclassification
• Proportion of misclassification according to the
number of number of patients in the learning sample
( van’t Veer, 2002)
Data of the validation 1 study
n=234 (55 with distant metastases)
Survival without distant metastasis, Cox model
(Dunkler, Michiels, Schemper. Eur J Cancer, 2007)
Explained variability of the pioneer study
R2
Model without factors 0%
Model with only conventional factors 16 % (±5%)
Model with only molecular signature 12% (±4%)
Model with conventional factors AND the
molecular signature
19 % (±5%)
Added value of the molecular signature 3 %
Predictive factors of the effect of systemic
treatments
Conclusions
• Useful predictive factors: HR, HER2
• However, they explain only a part of the
variability
• They give probabilities and are not
deterministic
• Biomics signatures: Hopes and a large field of
research
• Clinical application: only robust results

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Arriagada, r. breast cancer

  • 1. Predictive factors of the effect of adjuvant systemic treatments in breast cancer R. Arriagada 1-3 , S. Michiels 2 1 Karolinska Institutet and University Hospital, Stockholm, Sweden 2 Institut Gustave-Roussy 3 Université de Paris-Sud, France
  • 2. Predictive factors of the effect of adjuvant systemic treatments • Why only systemic treatments ? • Hormonal receptors • HER2 • Molecular classifications • Genomics signatures • Methodological considerations
  • 3. Radiotherapy in invasive breast cancer Isolated loco-regional recurrences in the trials of any type of radiotherapy (RT) versus no RT Isolated local recurrence Absolute difference in risk of isolated local recurrence: 20%, mostly within the first 5 years. EBCTCG, Lancet 366: 2087-2106, 2005
  • 4. Prognostic and predictive factors • Prognostic factors: those that in multivariate analysis show an independent effect on the studied event • May be studied in large retrospective series • Predictive factors: those that are shown to be significantly related to treatment effect • They should be studied in large randomised series testing the treatment (subgroup analysis), or taking tumour response as event (advanced disease or neo-adjuvant setting)
  • 5. Hormonal receptors and hormonoresistance • ER: good predictors but not enough • Still about 50% of patients with ER+ are non- responders • About 10% of patients with ER- are responders • ER and PR are not enough • Others markers, pathways and cross-talks
  • 6. Variations of treatment effects according to covariates Intrinsic resistance to hormonal treatments HR N Rate 95% CI ER+ PR+ 102 / 319 32 % 27 - 37 ( ER - PR + 15 / 26 58 % 37 – 77 ) ER + PR - 151 / 223 68 % 61 - 74 ER - PR - 179 / 197 91 % 86 - 94 * Osborne K. Breast, 1991
  • 7. Hormonoresistance breast cancer Rationale • Two-thirds of tumours have positive ER and/or PR • ER good predictor of tumour response (50%), but only a part of the puzzle - ERα - ERβ (Gustafsson et al) - Other factors (EGFR / HER2 receptors) - Crosstalk ER and GFR pathways
  • 8. Hormonoresistance breast cancer Rationale • EGFR / HER2 pathway may play a role in resistance to SERMs (e.g. tamoxifen) • ER complex with other transcription factors (Fos and Jun proteins), alter gene transcription (cyclyn D, ILGF-1,…) • P53 mutation: poor response to tamoxifen
  • 9. Hormonoresistance Tamoxifen: largely used for 30 years Hormonoresistance • Loss of ER expression • Modification of expression oestrogen-related genes such as those coding GF or GF receptors • Altered expression of transcriptional cofactors associated with ER α • Deterioration of ER α circulation • Implication of ER β • Alterations of tamoxifen metabolism • ……
  • 10. Hormonoresistance Tamoxifen: gold standard for 30 years • Agonistic and antagonistic effects • Prevents the binding of oestrogen to its receptor • Intrinsic (50% of ER+) and acquired resistance • Agonistic effect: increase some side effects • Adjuvant use for 5 years (however, some patients could benefit from a longer treatment) • More accurate and selective predictive factors are needed.
  • 11. Hormonoresistance Anti-aromatase inhibitors (AIs) • Exemestane, anastrazole, letrozole • More effective than TAM in postmenopausal pts • Optimal treatment and sequencing to be defined • Adverse effects: joint disorders • ER+, HER2+ : AIs ? • ER+, PR+ : sequence of TAM and AIs ?
  • 12. Hormonoresistance Fulvestrant • Steroidal ER antagonist with no agonist effect • It binds, blocks and accelerates degradation of ER protein • As effective as anastrazole and tamoxifen in advanced ER+ breast cancer • Well tolerated • Lacks cross-resistance with TAM and AIs • Sequential regimens ?
  • 13. Hormonoresistance Additional predictive factors • ERα + and PR+ only used for practical indications • Functional genomics: subgroups of gene profile (e.g. Paik et al) • Proteomics: study complex protein mixtures with high resolution, SELDI-TOF-MS and antibody array (Linderholm et al): 5 new potential biomarkers
  • 14. Hormonoresistance Practical implications of prediction • Tumours resistant to TAM could be sensitive to AIs and viceversa • The same for the indication of Fulvestrant • Definition of optimal sequencing (BIG 01-98) • Knowledge about mechanisms of resistance: new drugs or treatment of hormonal resistance
  • 15. J 0 Frozen biopsy US PET* MRI Frozen biopsy US PET* MRI 1 month Surgery at 4 months if OR < 50% Surgery at 6 months Frozen sample US PET* MRI US PET* MRI * : optional CARMINA: Neo-adjuvant study T2 - 4 N0-3, M0 patients Anastrozole or fulvestrant 5 yrs adjuvant hormonal treatment
  • 16. Domain Function Homology A/B The regulatory domain 18% C The DNA-binding domain 97% D The hinge 30% E The ligand-binding domain 59% F The F region 18% Oestrogen receptor family Human Estrogen Receptor α: 6q25.1 Human Estrogen Receptor β : 14q22-24 A/B C D E F -COOHNH2- 1 148 214 304 500 530 NH2- A/B C D E F -COOH 1 185 251 355 549 595
  • 17. • In ductal cells of the mammary gland, ERα and ERβ oppose each other on proliferation • The proliferative response to oestrogens is determined by the ratio of ERα / ERβ • Functions of ERβ in the breast are probably related to both its anti-proliferative and its pro-differentiation functions • Breast cancer in postmenopausal women:  high expression of ERα (cancer cells and normal ducts)  indicate a normal elevation of ERα in the absence of its ligand, estradiol Oestrogen receptor family I
  • 18. • ERα expression in normal postmenopausal breast is not elevated • ERβ expressed > 60% of breast epithelial cells • In some women, ERβ is not detected but the splice variant ERβ cx may be very abundant • Breast cancer sections showed that ERβ is lost and ERα is gained as we go from normal tissue to cancer • A decreased level of ERβ mRNA may be associated with breast tumourigenesis • DNA methylation: important mechanism for ERβ gene silencing in breast cancer Oestrogen receptor family II
  • 19. Pharmacogenetic Tools (TAM) Efficacy • Polymorphism of TAM metabolising genes : – CYP2D6 : TAM OH-Tam, N-desmethylTam⇨ ⇨ 4 OH-N-desmethylTam (endoxifen) • Antidepressant (selective serotonin re-uptake inhibitors), currently used for hot flushes linked to TAM, are CYP2D6 inhibitors. • Plasma concentration of Endoxifen ⇩ if CYP2D6 *4/*4 genotype or paroxetin use. Goetz et al, 2005,2007; Jin et al, 2005; Borges et al, 2006; Wegman et al, 2007
  • 20. • AGE • Hormonal receptors • HER2 • Others ? Adjuvant chemotherapy effect Predictive factors
  • 21. Variations of treatment effects according to covariates Intrinsic resistance to chemotherapy IBCSG study: 1275 pts N- , periop CT Factor N HR (CT vs no) P (Cox) Grade 1 200 2.11 0.04 2 519 0.76 3 432 0.75 ER + 608 0.87 0.01 - 379 0.58 PR + 459 0.67 0.03 PR - 466 0.80 * Neville et al, JCO 10: 696-705, 1992
  • 22. Variations of treatment effects according to covariates Adjuvant setting: Hormonal receptors • In more recent randomised data, HR+ appears as a marker of intrinsic chemoresistance: ♦ French studies * ♦ IBCSG IX study ** * Arriagada R et al. Ann Oncol, 13: 1378-86, 2002 Arriagada R et al. Acta Oncol, 44: 458-66, 2005 ** IBCSG JNCI 94: 1054-1065, 2002
  • 23. Variations of treatment effects according to covariates Chemotherapy • Drug type: anthracycline vs CMF-like regimens (EBCTCG) • Anthracycline dose: Belgian and French trials* • Hormonal receptors: French study** • Age (EBCTCG) * Piccart M et al, JCO 19: 3103-10, 2001; Bonneterre J et al, JCO 19: 602-11, 2001 ** Arriagada R et al. Acta Oncol 44: 458-66, 2005
  • 24. DFS according to ER ERPoor 27/79 41/76 -10.2 16.8 ER++ 47/157 63/159 -9.2 27.4 ER+++ 85/250 84/249 -0.2 42.2 Total 159/486 188/484 -19.6 86.4 Category CT NoCT O-E Variance (CT:NoCT) ( SD) No.Events/No.Entered RelativeRisk RiskRedn CTeffect2P=0.04 CTbetter|NoCTbetterTestforheterogeneity:2P=0.09 Testfortrend:2P=0.03 20 % 10 0.0 0.5 1.0 1.5 2.0 Trend P = 0.03 Arriagada R et al. Acta Oncol 44: 458-66, 2005
  • 25. DFS according to ER Interaction P = 0.005 Comforti R et al. Ann Oncol (in press)
  • 26. DFS in ER- (CT vs no CT) Interaction P = 0.005 Comforti R et al. Ann Oncol (in press)
  • 27. DFS according to HER2 Interaction P = 0.34 Comforti R et al. Ann Oncol (in press)
  • 28. DFS according to molecular subclassification Interaction P = 0.076 Comforti R et al. Ann Oncol (in press)
  • 29. Overcoming drug resistance Drug Doses Lower doses of anthracyclines have a lower effect than higher doses 1. CALGB * 2. Belgian trial ** 3. French trial *** 4. Counterpart: AML ? * Budman et al. JNCI 90: 1205-11, 1998 ** Piccart et al. JCO 19: 3103-10, 2001 *** Bonneterre et al. JCO 19: 602-11, 2001 **** Ann Oncol 14: 663-5, 2003
  • 30. Adjuvant anthracyclin-based CT HER2 as a prognostic factor Pritchard KI et al. N Engl J Med 354: 2103-11, 2006
  • 31. Adjuvant anthracyclin-based CT HER2 as a predictive factor Pritchard KI et al. N Engl J Med 354: 2103-11, 2006
  • 32. Adjuvant trastuzumab HER2 • HER2 +++ predictive of treatment effect • 0 / 1 effect ? Determinism ? • NSABP-31: HER++ FISH (–) also a similar effect • New trial for these patients • BETH trial: adding bevacizumab for N+, HER2+++ Piccart M et al. N Engl J Med 353: 1659-72, HERA trial
  • 33. Definition of new predictive factors Genomics / Proteomics 1. Knowledge about the human genoma 2. Knowledge about functional genes 3. Investigation of gene expression: proteins 4. Technical facilities: Micro-arrays 1. Frozen tissues 2. Fresh tissues These investigations will be introduced in prospective randomised trials (e.g. MINDACT)
  • 34. Definition of new predictive factors Genomics / Micro-arrays 1. Determination of 25,000 genes 2. Selection of a genetic profile (or signature) based on 70 genes 3. Used in limited database and evaluated as a prognostic factor * 4. The introduction in randomised trials will allow to evaluate their predictive value * van’t der Veer L et al. Nature, 2002 Van der Vijver M et al. NEJM, 2003
  • 35. NSABP 21-gene RS (Oncotype DX) Tam versus TAM + CT (CMF or MF) 651 pts DMF interval A) Total B) Low risk C) Intermediate D) High risk (25 %) Paik S et al. J Clin Oncol 24: 2006
  • 36. Definition of new predictive factors BIG/TRANSBIG: Mindact US Intergroup TAILORx trial • Thousands of N- patients to be included • Europe: Amsterdam signature • US: Oncotype • Randomising adjuvant CT and HT • Expensive +++ • Feasibility ?
  • 37. Prognostic signature challenges C. Sotiriou (Brussels) • 10 – 20% discordance between labs • Molecular classification: suboptimal reproducibility • Fine-tuning needed • Very small gene overlap • Some validations • Most prognostic genes are markers of proliferation
  • 38. Statistical challenges related to micro-chips Hopes and false positive results S. Michiels, S. Koscielny, T. Boulet, C. Hill Biostatistics and Epidemiology Department 16 April 2007
  • 39. Some issues Molecular signature • Limited number of genes defining patient groups • Predictive signature for a defined metastatic risk assumes the existence of an unique genetic combination for this risk The old story of numbers • Analysed series with a small number of patients and thousands of covariates • Statistical power issues, interpretation and results validation
  • 40. Taille de l'échantillon d'apprentissage Tauxdemauvaisesclassifications 20 40 60 80 100 0.20.30.40.50.6 Prediction quality 95% CI Mean rate of misclassification • Proportion of misclassification according to the number of number of patients in the learning sample ( van’t Veer, 2002)
  • 41. Data of the validation 1 study n=234 (55 with distant metastases) Survival without distant metastasis, Cox model (Dunkler, Michiels, Schemper. Eur J Cancer, 2007) Explained variability of the pioneer study R2 Model without factors 0% Model with only conventional factors 16 % (±5%) Model with only molecular signature 12% (±4%) Model with conventional factors AND the molecular signature 19 % (±5%) Added value of the molecular signature 3 %
  • 42. Predictive factors of the effect of systemic treatments Conclusions • Useful predictive factors: HR, HER2 • However, they explain only a part of the variability • They give probabilities and are not deterministic • Biomics signatures: Hopes and a large field of research • Clinical application: only robust results

Editor's Notes

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