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Text mining for protein and small molecule relations

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Lars Juhl Jensen
Lars Juhl Jensen

The document discusses using text mining to identify relationships between proteins and small molecules mentioned in biomedical documents. It describes techniques for entity recognition and identification, as well as methods for extracting relationships between entities using co-occurrence analysis and natural language processing. Examples are provided to illustrate how relationships can be identified between proteins mentioned in a sample text passage.

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Text mining for protein and small molecule relations Lars Juhl Jensen EMBL
Why?
Overview ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Entity recognition ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Entity identification ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Example ,[object Object],[object Object],[object Object]
Identification of small molecules ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Co-occurrence ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Example ,[object Object],[object Object],[object Object],[object Object]
NLP ,[object Object],[object Object],[object Object],[object Object]
Example ,[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
ย 
Extraction of relations between protein and small molecules ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Text mining ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
ย 
Correlations ,[object Object],[object Object],[object Object],[object Object],[object Object]
Temporal trends
Buzzwords
Acknowledgments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Thank you!

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