A talk presented January 19, 2013 in the Indo-US Joint Workshop on Biodiversity Informatics at the Ashoka Trust for Research in Ecology and the Environment in Bangalore, India.
Regulatory harmonisation lessons from comparative studiesSTEPS Centre
The document discusses regulatory challenges surrounding transgenic cotton in Argentina and China. In Argentina, regulations have squeezed out small farmers by narrowing options, benefiting large commercial farms. In China, an explosion of seed company options has not empowered farmers to make real choices due to counterfeiting and inaccurate labeling. Both countries have used regulatory flexibilities but face implementation challenges as smaller farmer realities fall outside regulatory scope. New approaches are being explored, but the roles of regulators, public research, and civil society require consideration in designing effective regulations.
Rob Byrne: Energy transitions in low-income countries: Learning to articulate...STEPS Centre
Presentation at the STEPS Conference 2010 - Pathways to Sustainability: Agendas for a new politics of environment, development and social justice
http://www.steps-centre.org/events/stepsconference2010.html
Fifty years of M&E from before New Delhi to beyond the MDGsSTEPS Centre
This document discusses the history and evolution of monitoring and evaluation (M&E) practices over the past 50 years, from early target setting initiatives to current approaches. It outlines the basic definitions and purposes of M&E, including methodologies like logical frameworks and tools like surveys. The document then analyzes how M&E approaches have developed in tandem with target setting at the global, national and project levels. Finally, it considers the costs of M&E and debates the concept of value for money, concluding with questions around future directions for target setting and M&E methods.
Presentation by Michael Jacobs at the STEPS Centre Summer School, June 2013.
http://steps-centre.org/about/steps-summer-school/
Video here: http://www.youtube.com/watch?v=zqzcHzX6K8w
Lucrezia Tincani - Adaptable Livelihoods: wild foods, resilience and food sec...STEPS Centre
This document summarizes a study on how seasonality affects food security in rural Burkina Faso. The study used quantitative cooking surveys and interviews with 23 households over six seasons to analyze how households obtain food from different sources, including home production, purchases, wild foods, and gifts. The results show that households in northern villages had higher diversity in food sources and greater adaptive capacity to seasonal changes. The study aims to understand household resilience over time using the Panarchy Theory framework and identify trends between conservative and entrepreneurial approaches to livelihoods.
This document discusses the interconnected issues of water, energy, food, and climate (the nexus) and different perspectives on managing these resources. It notes that awareness is rising of how interconnected these issues are. It also discusses how the nexus can be framed as a national security issue or a social issue aimed at ensuring public goods and equitable access. The document advocates considering the nexus through a human security lens that decentralizes the state and focuses on environmental justice and insecurity. It argues nexus thinking can help identify mutually beneficial responses and trade-offs to meet demands sustainably.
The document discusses plans for an updated version (EOLv2) of the Encyclopedia of Life (EOL) website. EOLv2 will have a global scope, aggregate scientific data from various sources, engage diverse audiences through personalization and contextualization, and allow contributions from images, text, and comments. It aims to make taxonomic knowledge more accessible through internationalization, collections, communities, and incentives for improvement. Funding comes from various foundations and institutions, and content is provided through partnerships with scientific organizations and individual volunteers worldwide.
Regulatory harmonisation lessons from comparative studiesSTEPS Centre
The document discusses regulatory challenges surrounding transgenic cotton in Argentina and China. In Argentina, regulations have squeezed out small farmers by narrowing options, benefiting large commercial farms. In China, an explosion of seed company options has not empowered farmers to make real choices due to counterfeiting and inaccurate labeling. Both countries have used regulatory flexibilities but face implementation challenges as smaller farmer realities fall outside regulatory scope. New approaches are being explored, but the roles of regulators, public research, and civil society require consideration in designing effective regulations.
Rob Byrne: Energy transitions in low-income countries: Learning to articulate...STEPS Centre
Presentation at the STEPS Conference 2010 - Pathways to Sustainability: Agendas for a new politics of environment, development and social justice
http://www.steps-centre.org/events/stepsconference2010.html
Fifty years of M&E from before New Delhi to beyond the MDGsSTEPS Centre
This document discusses the history and evolution of monitoring and evaluation (M&E) practices over the past 50 years, from early target setting initiatives to current approaches. It outlines the basic definitions and purposes of M&E, including methodologies like logical frameworks and tools like surveys. The document then analyzes how M&E approaches have developed in tandem with target setting at the global, national and project levels. Finally, it considers the costs of M&E and debates the concept of value for money, concluding with questions around future directions for target setting and M&E methods.
Presentation by Michael Jacobs at the STEPS Centre Summer School, June 2013.
http://steps-centre.org/about/steps-summer-school/
Video here: http://www.youtube.com/watch?v=zqzcHzX6K8w
Lucrezia Tincani - Adaptable Livelihoods: wild foods, resilience and food sec...STEPS Centre
This document summarizes a study on how seasonality affects food security in rural Burkina Faso. The study used quantitative cooking surveys and interviews with 23 households over six seasons to analyze how households obtain food from different sources, including home production, purchases, wild foods, and gifts. The results show that households in northern villages had higher diversity in food sources and greater adaptive capacity to seasonal changes. The study aims to understand household resilience over time using the Panarchy Theory framework and identify trends between conservative and entrepreneurial approaches to livelihoods.
This document discusses the interconnected issues of water, energy, food, and climate (the nexus) and different perspectives on managing these resources. It notes that awareness is rising of how interconnected these issues are. It also discusses how the nexus can be framed as a national security issue or a social issue aimed at ensuring public goods and equitable access. The document advocates considering the nexus through a human security lens that decentralizes the state and focuses on environmental justice and insecurity. It argues nexus thinking can help identify mutually beneficial responses and trade-offs to meet demands sustainably.
The document discusses plans for an updated version (EOLv2) of the Encyclopedia of Life (EOL) website. EOLv2 will have a global scope, aggregate scientific data from various sources, engage diverse audiences through personalization and contextualization, and allow contributions from images, text, and comments. It aims to make taxonomic knowledge more accessible through internationalization, collections, communities, and incentives for improvement. Funding comes from various foundations and institutions, and content is provided through partnerships with scientific organizations and individual volunteers worldwide.
Les Levidow: Divergent Pathways for Sustainable Agriculture: Contending accou...STEPS Centre
The document discusses contending pathways and accounts of sustainable agriculture in European research agendas. The dominant pathway frames sustainability as inefficiency to be addressed through efficient technological fixes, turning agriculture into a biomass factory. Alternative pathways promoted by groups like Technology Platform Organics and the Standing Committee on Agricultural Research focus on farmers' agroecological knowledge and short supply chains valorizing local resources and product identity. These divergent paradigms prioritize different types of knowledge, economic relations, and research.
Leveraging an international infrastructure: Case studies from the Encyclopeda...Cyndy Parr
This document summarizes a presentation about leveraging international infrastructure for species descriptions using the Encyclopedia of Life (EOL) as a case study. It describes EOL's efforts to aggregate and curate over 1 million taxon pages from 200 providers. It analyzes the types and languages of content, license restrictions, ratings of providers, and the roles of curators. It also discusses opportunities to improve standards, support quality control, and make content more multilingual and open. Case studies demonstrate how EOL coordinates with other databases to resolve errors. The presentation concludes that EOL has made progress but there is still room to expand coverage and engage more users, content providers, and funders.
Prof Anne Glover: What is the right balance between respecting evidence and l...STEPS Centre
STEPS Centre Annual Symposium 2013 – Credibility Across Cultures: expertise, uncertainty and the global politics of scientific advice, 6-7 February 2013.
Professor Anne Glover CBE, Chief Scientific Adviser to the President of the European Commission keynote lecture.
Zhu Xufeng: Low Carbon Cooperation and Global LeadershipSTEPS Centre
ZHU Xufeng, Associate Professor, NanKai University.
Presentation to the UK-China Innovation Workshop for Sustainable and Equitable Development, Tsinghua University, 19 March 2010, co-organised by China Institute for Science and Technology Policy (CISTP) at Tsinghua University and the STEPS Centre.
http://anewmanifesto.org/news/china-workshop-presentationschina-workshop-presentations/
Maize Pathways workshop presentation 2: MCM findingsSTEPS Centre
1. The document summarizes findings from interviews conducted as part of a multicriteria mapping study exploring agricultural pathways in and out of maize production in Kenya.
2. Twenty-three interviews were conducted with farmers and Nairobi-based informants to discuss nine pathways and identify 147 criteria for evaluating pathway performance.
3. Analysis of the interview data identified groups of informants and criteria, evaluated pathway rankings, and analyzed qualitative information to understand perspectives on opportunities and barriers regarding different agricultural options.
Maria Teresa Armijos: Communal Water Dynamics: Politics, Identity and Natural...STEPS Centre
Presentation at the STEPS Conference 2010 - Pathways to Sustainability: Agendas for a new politics of environment, development and social justice
http://www.steps-centre.org/events/stepsconference2010.html
Anne Cunningham discusses why and how social networking can be used for learning and connecting with others in medical and health sciences education. She shares her experience starting a blog and Twitter account to link up with colleagues around the world to learn together. Cunningham addresses potential barriers to learning in networks, such as issues of openness, anonymity, identity, trust and time commitment. She emphasizes the need for generosity, thinking the best of others, and using emoticons to help networks function effectively.
Maize Pathways workshop presentation 3: Policy implicationsSTEPS Centre
Presentation from a national dissemination workshop in Nairobi on 22 March 2010, for the STEPS Centre's project on environmental change and maize innovation in Kenya.
To find out more about our maize work, visit www.steps-centre.org/ourresearch/crops,% 20kenya.html
The document discusses the benefits of exercise for mental health. Regular physical activity can help reduce anxiety and depression and improve mood and cognitive functioning. Exercise causes chemical changes in the brain that may help protect against mental illness and improve symptoms.
David Koepsell talked about The Mysteryof Intellectual Capital at the Manifesto Roundtable in the Hague, 24 November 2009, hosted by the 3TU.Centre for Ethics and Technology - www.ethicsandtechnology.eu
David Koepsell is assistant professor at TU Delft / 3TU.Ethics.
To find out more about the Roundtables, visit www.anewmanifesto.org
Manifesto Seminar - Joanna Chataway on Below the Radar InnovationSTEPS Centre
This document discusses approaches to innovation for developing countries. It proposes moving beyond traditional models of innovation focused on research and development (R&D) to approaches that emphasize small, incremental changes based on user feedback and learning by doing. The document also discusses the importance of disruptive innovation that challenges existing hierarchies and markets to better meet the needs of low-income consumers.
Bob Watson, Tyndall Centre, UEA - #steps13STEPS Centre
This document outlines Bob Watson's presentation on translating sound science into sound policy. It discusses key elements of the science-policy process including national and international research programs and assessments. It emphasizes that good science is essential but not sufficient for public policy and that decision-makers need consensus views on evidence, uncertainties, and policy implications. International assessments like those conducted by the IPCC and future proposed programs like Future Earth and the Intergovernmental Platform for Biodiversity and Ecosystem Services can help provide this evidence base.
Geoff Oldham: Reflections on UK/China collaborations on STI policy research -...STEPS Centre
Prof Geoff Oldham, Sussex University.
Presentation to the UK-China Innovation Workshop for Sustainable and Equitable Development, Tsinghua University, 19 March 2010, co-organised by China Institute for Science and Technology Policy (CISTP) at Tsinghua University and the STEPS Centre.
http://anewmanifesto.org/news/china-workshop-presentationschina-workshop-presentations/
Manifesto Roundtable - Kathmandu, NepalSTEPS Centre
The document summarizes Dr. Adrian Ely's presentation on developing a new manifesto for innovation, sustainability, and development. [1] It discusses the history of the original "Sussex Manifesto" commissioned by the UN. [2] Dr. Ely proposes a new "3D" agenda for the new manifesto focusing on directionality, distribution, and diversity. [3] The roundtable discussion will contribute perspectives on how innovation can help achieve sustainability goals.
Christian Stein - A network approach to analyzing governance of land, water a...STEPS Centre
Presentation at the STEPS Conference 2010 - Pathways to Sustainability: Agendas for a new politics of environment, development and social justice
http://www.steps-centre.org/events/stepsconference2010.html
Presentation from one of 3 breakout groups at the Brighton Manifesto Roundtable on 15 March 2010.
The group discussed examples of innovation, made recommendations and prepared questions for the debate which followed the roundtable.
For more information, see www.anewmanifesto.org
The Dutch Species Catalogue aims to be a central reference for researchers and policymakers on multicellular species in the Netherlands. It was launched in 2005 and has since been revised with input from over 100 volunteer specialists. The catalog currently lists over 40,000 taxa but only 4,000 have detailed textual information. It faces challenges in developing editorial applications and curating its network, while opportunities exist in connecting its information to other databases.
Global content summit: Overview, content partnering, richnessCyndy Parr
These are Cyndy Parr's presentations at the EOL Global Partner Summit, starting with an overview of the meeting, and including an overview of how we set up content partnerships, and how we calculate and use page richness scores.
Les Levidow: Divergent Pathways for Sustainable Agriculture: Contending accou...STEPS Centre
The document discusses contending pathways and accounts of sustainable agriculture in European research agendas. The dominant pathway frames sustainability as inefficiency to be addressed through efficient technological fixes, turning agriculture into a biomass factory. Alternative pathways promoted by groups like Technology Platform Organics and the Standing Committee on Agricultural Research focus on farmers' agroecological knowledge and short supply chains valorizing local resources and product identity. These divergent paradigms prioritize different types of knowledge, economic relations, and research.
Leveraging an international infrastructure: Case studies from the Encyclopeda...Cyndy Parr
This document summarizes a presentation about leveraging international infrastructure for species descriptions using the Encyclopedia of Life (EOL) as a case study. It describes EOL's efforts to aggregate and curate over 1 million taxon pages from 200 providers. It analyzes the types and languages of content, license restrictions, ratings of providers, and the roles of curators. It also discusses opportunities to improve standards, support quality control, and make content more multilingual and open. Case studies demonstrate how EOL coordinates with other databases to resolve errors. The presentation concludes that EOL has made progress but there is still room to expand coverage and engage more users, content providers, and funders.
Prof Anne Glover: What is the right balance between respecting evidence and l...STEPS Centre
STEPS Centre Annual Symposium 2013 – Credibility Across Cultures: expertise, uncertainty and the global politics of scientific advice, 6-7 February 2013.
Professor Anne Glover CBE, Chief Scientific Adviser to the President of the European Commission keynote lecture.
Zhu Xufeng: Low Carbon Cooperation and Global LeadershipSTEPS Centre
ZHU Xufeng, Associate Professor, NanKai University.
Presentation to the UK-China Innovation Workshop for Sustainable and Equitable Development, Tsinghua University, 19 March 2010, co-organised by China Institute for Science and Technology Policy (CISTP) at Tsinghua University and the STEPS Centre.
http://anewmanifesto.org/news/china-workshop-presentationschina-workshop-presentations/
Maize Pathways workshop presentation 2: MCM findingsSTEPS Centre
1. The document summarizes findings from interviews conducted as part of a multicriteria mapping study exploring agricultural pathways in and out of maize production in Kenya.
2. Twenty-three interviews were conducted with farmers and Nairobi-based informants to discuss nine pathways and identify 147 criteria for evaluating pathway performance.
3. Analysis of the interview data identified groups of informants and criteria, evaluated pathway rankings, and analyzed qualitative information to understand perspectives on opportunities and barriers regarding different agricultural options.
Maria Teresa Armijos: Communal Water Dynamics: Politics, Identity and Natural...STEPS Centre
Presentation at the STEPS Conference 2010 - Pathways to Sustainability: Agendas for a new politics of environment, development and social justice
http://www.steps-centre.org/events/stepsconference2010.html
Anne Cunningham discusses why and how social networking can be used for learning and connecting with others in medical and health sciences education. She shares her experience starting a blog and Twitter account to link up with colleagues around the world to learn together. Cunningham addresses potential barriers to learning in networks, such as issues of openness, anonymity, identity, trust and time commitment. She emphasizes the need for generosity, thinking the best of others, and using emoticons to help networks function effectively.
Maize Pathways workshop presentation 3: Policy implicationsSTEPS Centre
Presentation from a national dissemination workshop in Nairobi on 22 March 2010, for the STEPS Centre's project on environmental change and maize innovation in Kenya.
To find out more about our maize work, visit www.steps-centre.org/ourresearch/crops,% 20kenya.html
The document discusses the benefits of exercise for mental health. Regular physical activity can help reduce anxiety and depression and improve mood and cognitive functioning. Exercise causes chemical changes in the brain that may help protect against mental illness and improve symptoms.
David Koepsell talked about The Mysteryof Intellectual Capital at the Manifesto Roundtable in the Hague, 24 November 2009, hosted by the 3TU.Centre for Ethics and Technology - www.ethicsandtechnology.eu
David Koepsell is assistant professor at TU Delft / 3TU.Ethics.
To find out more about the Roundtables, visit www.anewmanifesto.org
Manifesto Seminar - Joanna Chataway on Below the Radar InnovationSTEPS Centre
This document discusses approaches to innovation for developing countries. It proposes moving beyond traditional models of innovation focused on research and development (R&D) to approaches that emphasize small, incremental changes based on user feedback and learning by doing. The document also discusses the importance of disruptive innovation that challenges existing hierarchies and markets to better meet the needs of low-income consumers.
Bob Watson, Tyndall Centre, UEA - #steps13STEPS Centre
This document outlines Bob Watson's presentation on translating sound science into sound policy. It discusses key elements of the science-policy process including national and international research programs and assessments. It emphasizes that good science is essential but not sufficient for public policy and that decision-makers need consensus views on evidence, uncertainties, and policy implications. International assessments like those conducted by the IPCC and future proposed programs like Future Earth and the Intergovernmental Platform for Biodiversity and Ecosystem Services can help provide this evidence base.
Geoff Oldham: Reflections on UK/China collaborations on STI policy research -...STEPS Centre
Prof Geoff Oldham, Sussex University.
Presentation to the UK-China Innovation Workshop for Sustainable and Equitable Development, Tsinghua University, 19 March 2010, co-organised by China Institute for Science and Technology Policy (CISTP) at Tsinghua University and the STEPS Centre.
http://anewmanifesto.org/news/china-workshop-presentationschina-workshop-presentations/
Manifesto Roundtable - Kathmandu, NepalSTEPS Centre
The document summarizes Dr. Adrian Ely's presentation on developing a new manifesto for innovation, sustainability, and development. [1] It discusses the history of the original "Sussex Manifesto" commissioned by the UN. [2] Dr. Ely proposes a new "3D" agenda for the new manifesto focusing on directionality, distribution, and diversity. [3] The roundtable discussion will contribute perspectives on how innovation can help achieve sustainability goals.
Christian Stein - A network approach to analyzing governance of land, water a...STEPS Centre
Presentation at the STEPS Conference 2010 - Pathways to Sustainability: Agendas for a new politics of environment, development and social justice
http://www.steps-centre.org/events/stepsconference2010.html
Presentation from one of 3 breakout groups at the Brighton Manifesto Roundtable on 15 March 2010.
The group discussed examples of innovation, made recommendations and prepared questions for the debate which followed the roundtable.
For more information, see www.anewmanifesto.org
The Dutch Species Catalogue aims to be a central reference for researchers and policymakers on multicellular species in the Netherlands. It was launched in 2005 and has since been revised with input from over 100 volunteer specialists. The catalog currently lists over 40,000 taxa but only 4,000 have detailed textual information. It faces challenges in developing editorial applications and curating its network, while opportunities exist in connecting its information to other databases.
Global content summit: Overview, content partnering, richnessCyndy Parr
These are Cyndy Parr's presentations at the EOL Global Partner Summit, starting with an overview of the meeting, and including an overview of how we set up content partnerships, and how we calculate and use page richness scores.
A talk given at the Semantic Reasoning workshop held at the National Museum of Natural History September 6, 2012. The audience included computer scientists and biological scientists interested in using EOL for their research.
EOL aggregates scientific data from various databases about all species globally to provide summaries for various audiences including enthusiasts, learners, citizen scientists, and scientists. It utilizes crowd-sourcing to improve data quality and provide computable data for research through features like collections, APIs, and challenges. Future enhancements aim to further enhance EOL's capabilities for scientific research.
A talk presented January 20, 2013 in the Indo-US Joint Workshop on Biodiversity Informatics at the Ashoka Trust for Research in Ecology and the Environment in Bangalore, India.
Forging the Digital Roadmap: The Preservation, Curation and Stewardship NexusBianca Crowley
Bianca Crowley discusses her role as Collections Coordinator at the Smithsonian Libraries and her work with the Biodiversity Heritage Library (BHL). The BHL is a digital library consortium that provides open access to over 58,000 titles and 39 million pages of biodiversity literature. As Collections Coordinator, her responsibilities include addressing challenges like preserving content, integrating externally scanned materials, and ensuring data and metadata quality. She emphasizes that collaboration, flexible problem-solving, and incorporating user feedback are keys to the BHL's success. Moving forward, the BHL aims to improve article-level access and integrate with related resources like Biostor.org to enhance its role in the broader biodiversity research community.
Keynote presented to KE workshop held in conjunction with the release of the report "A Surfboard for Riding the Wave
Towards a four country action programme on research data": http://www.knowledge-exchange.info/Default.aspx?ID=469
V Rolfe OER12 Conference Search Engine Optimisation 17April2012Vivien Rolfe
Talk given by Viv to OER12, Cambridge UK on using SEO techniques to make OER discoverable on the internet. Part of the UKOER Phase 3 project at De Montfort University, http://www.biologycourses.co.uk
BioCuration 2019 - Evidence and Conclusion Ontology 2019 Updatedolleyj
The Evidence and Conclusion Ontology (ECO) describes types of evidence relevant to biological investigations. First developed in the early 2000s, ECO now consists of over 1700 defined classes and is used by a large, and growing, list of resources. ECO imports close to 1000 classes from the Ontology for Biomedical Investigations and the Gene Ontology for use in logical definitions. Historically, ECO terms have generally been categorized by either the biological context of the evidence (e.g. gene expression) or the technique used to generate the evidence (e.g. PCR-based evidence). The result is that sometimes terms that have related biological context are found under different unrelated nodes. To address this, we have been performing a rigorous review of the structure and logic of the branches of ECO. Working with additional input from collaborators through the issue tracker on GitHub, term labels, definitions, and relationships are being evaluated and updated. The goal of these changes is to increase the logical consistency of ECO, make it easier for users to find and understand terms, and allow for ECO to continue to grow and support its users. In addition to the structural review, we have been working with CollecTF to utilize ECO for automated text mining. To generate a curated corpus for this effort, we have been annotating ECO terms to sentences which contain evidence-based assertions about gene products, taxonomic entities, and sequence features. From this effort we have developed clearly-defined annotation guidelines that have been passed on to a team of undergraduates who are continuing the curation effort.
Annotations are limited to single sentences, or to two consecutive sentences, containing the evidence instance and assertion clause. The quality of the mapping to ECO
and the strength of the author’s assertion are also captured. ECO is freely available at http://evidenceontology.org/ and https://github.com/evidenceontology.
Keynote presentation by Professor Carole Goble at BOSC (Bioinformatics Open Source Conference) Long Beach, California, USA, July 14 2012. Co-located with ISMB, Intelligent Systems in Molecular Biology
BioCatalogue DILS & Enfin 2009 by JitsBioCatalogue
Jiten Bhagat presented on the BioCatalogue, a public and curated catalogue of life science web services. The BioCatalogue allows anyone to register, discover, and curate web services. It provides rich metadata for over 3,000 publicly available life science web services. The BioCatalogue aims to make these services easier to find, advertise, understand, and use for various stakeholders like service providers, users, and curators. It utilizes a community-driven model where experts oversee annotation from both automated sources and crowdsourced user contributions.
Here are some examples of countries involved in open educational resources (OERs) across the world:
- United States: MIT Open Courseware Project, Rice University Connexions
- France: ParisTech OCW Project
- China: China Open Resources for Education consortium involving over 222 universities
- Africa: OER Africa initiative supported by UNESCO
- India: MORIL (Masters of Rules, India and Law) Project
- Multiple countries: Open educational practices and policies supported by UNESCO and its virtual university
Encyclopedia of Life: Use cases for phenotypesCyndy Parr
EOL aggregates and curates scientific data from multiple sources to provide comprehensive summaries of taxa. It has grown from 2.8 million pages and 2 million data objects two years ago to 3.3 million pages and over 5 million data objects today. EOL is working to improve semantic search, link data to external resources, promote text mining and crowdsourcing, and provide analyzable data summaries to enable new types of research across the tree of life.
Encyclopedia of Life: Applying Concepts from Amazon and LEGO to Biodiversity ...Cyndy Parr
The document summarizes the Encyclopedia of Life (EOL) project, which aims to create a webpage for every known species. It discusses how EOL works by crowdsourcing content from over 240 providers and harvesting data from third party applications. EOL currently has pages for over 1.1 million species and sees 3 million unique visitors annually. The document outlines ongoing efforts to make EOL's large volume of species data more computable through linking data to external ontologies, promoting text mining and crowdsourcing of data, and developing infrastructure for standardized access and analysis of species interaction networks and trait information.
The document discusses the Encyclopedia of Life (EOL) project, which aims to create a web page for every known species containing key information about it. It outlines EOL's goals of aggregating biodiversity data from various sources and making it openly accessible online. The document also describes EOL's efforts to establish a taxonomic framework and infrastructure to facilitate collaborative curation of species pages.
Ontology-based Tools to Enhance the Curation WorkflowTrish Whetzel
This document discusses tools from the National Center for Biomedical Ontology (NCBO) that can enhance the data curation workflow. It describes Ontology Widgets and web services that allow consistent annotation of data by reusing terms from ontologies. It also describes BioPortal Notes for collecting structured feedback to enrich ontologies, and the NCBO Annotator web service for annotating textual metadata with ontology terms. These tools address challenges of curating large amounts of data by facilitating data submission, ontology evolution, and metadata annotation.
Introducing OWL Ontologies - the use of globally accessible controlled vocabularies in the domain of biology, chemistry, health, and data science. The more that data elements and form fields reference these, the more your application and data will become globally connected and adaptable.
Webinar presentation by Cyndy Parr and Erin Antognoli hosted by Hunger Solutions Institute (HSI) and Presidents United to Solve Hunger (PUSH) at Auburn University on April 25, 2019.
The Ag Data Commons is a platform for aggregating, cataloging, and sharing agricultural data. It harvests metadata from various federal and university repositories to make data more discoverable without duplication of submission efforts. Currently it catalogs open datasets and links them to related literature. In the future, it aims to harvest more funding information and methodological details to better link datasets to associated research articles and grants. The goal is to organize agricultural data according to shared standards to make it fully machine-readable and reusable to support further research and decision-making.
Biodiversity informatics and the agricultural data landscapeCyndy Parr
Introductory talk of a symposium on Agrobiodiversity informatics at the 2016 annual meeting of the Biodiversity Information Standards. Begins with an overview of the symposium and its speakers, and then launches into my talk.
Public access to research results at USDACyndy Parr
An update on public access activities at the National Agricultural Library and next steps, presented 11 January 2017 at the Earth Science Information Partners (ESIP) meeting in Bethesda, Maryland.
Ag Data Commons: Agricultural research metadata and dataCyndy Parr
The document proposes the Ag Data Commons as a solution to address challenges with agricultural research data by creating a central repository to host metadata and data according to federal directives for public access. It outlines the goals of the Ag Data Commons to support public access mandates through a sustainable platform for hosting and sharing agricultural research data and metadata in both human and machine-readable formats. The document also provides details on the workflow for submitting and publishing data on the Ag Data Commons to ensure standardized metadata and compliance with best practices.
Ag Data Commons: A new USDA catalog and repository for agricultural research ...Cyndy Parr
The document summarizes the USDA's Ag Data Commons, a new catalog and repository for agricultural research data. It provides an overview of the National Agricultural Library's Knowledge Services Division, which manages the Ag Data Commons. Key points include that the Ag Data Commons provides data repository, curation, and management services; supports the open data initiative; and has grown from a prototype in 2015 to include almost 200 datasets from over 35 non-NAL users in its pilot phase in 2016. The goal is for the Ag Data Commons to become a centralized catalog and repository for open agricultural research data.
Preparing for data-intensive science across domains.Cyndy Parr
Presented at American Institute for Biological Sciences council meeting 8 December 2015. I focus on anecdotes from multiple domains on the kinds of skills and trajectories that empower scientists at multiple levels to become engaged in data-intensive science as data wranglers or tool-builders. Even if they don't have lots of funding from NSF or NIH.
This document discusses the Ag Data Commons, a proposed solution for aggregating and providing access to open agricultural research data. It would support public access mandates by hosting USDA and other agricultural data. The Ag Data Commons would provide both human and machine access to metadata and data. It would integrate existing databases and repositories and add value by standardizing metadata, assigning DOIs, and linking to related data and literature. The document considers options for the technical platform, focusing on standards for metadata, controlled vocabularies, and trusted data repository requirements.
Ag Data Commons: Adding Value to open agricultural research dataCyndy Parr
A talk presented on 30 September 2013 at the Biodiversity Information Standards (Taxonomic Databases Working Group TDWG) annual meeting in Nairobi, Kenya
This document provides an overview of the TDWG annual meeting in Nairobi, Kenya. It lists the meeting themes, registration details, membership numbers, executive committee members, and highlights of the program which includes symposia, talks, posters, workshops and interest groups. A history of past meeting locations is also included.
iEvoBio Keynote: Frontiers of discovery with Encyclopedia of Life -- TRAITBANK Cyndy Parr
Talk presented at iEvoBio 2014 conference in Raleigh, North Carolina. Though there's a similar title and overlap with the talk I posted last week, there is new material here especially geared towards an informatics crowd savvy in the tools and technology.
Frontiers of discovery with Encyclopedia of LifeCyndy Parr
Presented at the National Museum of Natural History, Smithsonian Institution 18 June 2014
Describes, among other things, development of the TraitBank repository of species attributes, and the use of EOL and TraitBank in scientific research.
Practical interoperability across semantic stores of data for ecological, tax...Cyndy Parr
Presented at the Biodiversity Information Standards (Taxonomic Databases Working Group) 2013 meeting in Florence, Italy on 31 October 2013. Essentially, an introduction to aspects of the back end of the new trait repository of Encyclopedia of Life.
Using and extending Darwin Core for structured attribute dataCyndy Parr
Presented at the Biodiversity Information Standards (Taxonomic Databases Working Group) 2013 meeting in Florence, Italy on 29 October 2013. Essentially, an introduction to the new trait repository of Encyclopedia of Life.
How the Encyclopedia of Life is wrangling organismal attribute dataCyndy Parr
The document discusses the Encyclopedia of Life's (EOL) efforts to aggregate and standardize organism attribute data from various sources. Some key points:
- EOL harvests data from over 240 content providers and hosts over 1.1 million species pages. It receives over 3.3 million annual visitors from 235 countries.
- EOL is developing a TraitBank to aggregate trait data from various datasets, totaling over 128,000 data points for over 20,000 taxa so far. It aims to make this data easily accessible and analyzable.
- Challenges include standardizing data from different sources and filling gaps, but aggregated trait data could help answer questions about topics like species interactions, tissue
The Road to TraitBank: What's Next for the Encyclopedia of LifeCyndy Parr
The document discusses plans to expand the Encyclopedia of Life (EOL) database to include a new "TraitBank" that will store trait data for millions of species. Currently, EOL contains basic information pages for over 1 million species but lacks details on species traits. The first step is adding limited trait data to EOL pages through a new funding initiative focused on marine species. The long term goal is to create a larger TraitBank database that can handle vast amounts of trait data, promote best practices, and enable crowd-sourcing contributions to facilitate research. By linking trait information to species on EOL, it will become a more powerful open resource for studying biodiversity.
1) EOL China collects and aggregates species data from various Chinese institutions into centralized databases for animals, plants, and microbes.
2) Data is collected in Bisby Core XML format and made available through a central EOL China portal and specialized websites.
3) The databases currently contain over 22,000 pages of information on Chinese species, with the goal of expanding coverage over the next few years.
The Western Ghats Portal (http://thewesternghats.in) is an open collaborative information system launched in January 2012 to disseminate biodiversity and conservation knowledge about the Western Ghats region. It was initiated to aggregate data from various partner institutions and provide an open access platform. Currently, it contains over 150 map layers, 600 species pages, and over 110,000 occurrence records. The portal is funded by CEPF until 2013 and aims to build a participative community and governance structure for long term sustainability. Key challenges include mobilizing additional data contributions and ensuring data quality at scale.
High performance Serverless Java on AWS- GoTo Amsterdam 2024Vadym Kazulkin
Java is for many years one of the most popular programming languages, but it used to have hard times in the Serverless community. Java is known for its high cold start times and high memory footprint, comparing to other programming languages like Node.js and Python. In this talk I'll look at the general best practices and techniques we can use to decrease memory consumption, cold start times for Java Serverless development on AWS including GraalVM (Native Image) and AWS own offering SnapStart based on Firecracker microVM snapshot and restore and CRaC (Coordinated Restore at Checkpoint) runtime hooks. I'll also provide a lot of benchmarking on Lambda functions trying out various deployment package sizes, Lambda memory settings, Java compilation options and HTTP (a)synchronous clients and measure their impact on cold and warm start times.
The Microsoft 365 Migration Tutorial For Beginner.pptxoperationspcvita
This presentation will help you understand the power of Microsoft 365. However, we have mentioned every productivity app included in Office 365. Additionally, we have suggested the migration situation related to Office 365 and how we can help you.
You can also read: https://www.systoolsgroup.com/updates/office-365-tenant-to-tenant-migration-step-by-step-complete-guide/
Dandelion Hashtable: beyond billion requests per second on a commodity serverAntonios Katsarakis
This slide deck presents DLHT, a concurrent in-memory hashtable. Despite efforts to optimize hashtables, that go as far as sacrificing core functionality, state-of-the-art designs still incur multiple memory accesses per request and block request processing in three cases. First, most hashtables block while waiting for data to be retrieved from memory. Second, open-addressing designs, which represent the current state-of-the-art, either cannot free index slots on deletes or must block all requests to do so. Third, index resizes block every request until all objects are copied to the new index. Defying folklore wisdom, DLHT forgoes open-addressing and adopts a fully-featured and memory-aware closed-addressing design based on bounded cache-line-chaining. This design offers lock-free index operations and deletes that free slots instantly, (2) completes most requests with a single memory access, (3) utilizes software prefetching to hide memory latencies, and (4) employs a novel non-blocking and parallel resizing. In a commodity server and a memory-resident workload, DLHT surpasses 1.6B requests per second and provides 3.5x (12x) the throughput of the state-of-the-art closed-addressing (open-addressing) resizable hashtable on Gets (Deletes).
Conversational agents, or chatbots, are increasingly used to access all sorts of services using natural language. While open-domain chatbots - like ChatGPT - can converse on any topic, task-oriented chatbots - the focus of this paper - are designed for specific tasks, like booking a flight, obtaining customer support, or setting an appointment. Like any other software, task-oriented chatbots need to be properly tested, usually by defining and executing test scenarios (i.e., sequences of user-chatbot interactions). However, there is currently a lack of methods to quantify the completeness and strength of such test scenarios, which can lead to low-quality tests, and hence to buggy chatbots.
To fill this gap, we propose adapting mutation testing (MuT) for task-oriented chatbots. To this end, we introduce a set of mutation operators that emulate faults in chatbot designs, an architecture that enables MuT on chatbots built using heterogeneous technologies, and a practical realisation as an Eclipse plugin. Moreover, we evaluate the applicability, effectiveness and efficiency of our approach on open-source chatbots, with promising results.
zkStudyClub - LatticeFold: A Lattice-based Folding Scheme and its Application...Alex Pruden
Folding is a recent technique for building efficient recursive SNARKs. Several elegant folding protocols have been proposed, such as Nova, Supernova, Hypernova, Protostar, and others. However, all of them rely on an additively homomorphic commitment scheme based on discrete log, and are therefore not post-quantum secure. In this work we present LatticeFold, the first lattice-based folding protocol based on the Module SIS problem. This folding protocol naturally leads to an efficient recursive lattice-based SNARK and an efficient PCD scheme. LatticeFold supports folding low-degree relations, such as R1CS, as well as high-degree relations, such as CCS. The key challenge is to construct a secure folding protocol that works with the Ajtai commitment scheme. The difficulty, is ensuring that extracted witnesses are low norm through many rounds of folding. We present a novel technique using the sumcheck protocol to ensure that extracted witnesses are always low norm no matter how many rounds of folding are used. Our evaluation of the final proof system suggests that it is as performant as Hypernova, while providing post-quantum security.
Paper Link: https://eprint.iacr.org/2024/257
Discover top-tier mobile app development services, offering innovative solutions for iOS and Android. Enhance your business with custom, user-friendly mobile applications.
In the realm of cybersecurity, offensive security practices act as a critical shield. By simulating real-world attacks in a controlled environment, these techniques expose vulnerabilities before malicious actors can exploit them. This proactive approach allows manufacturers to identify and fix weaknesses, significantly enhancing system security.
This presentation delves into the development of a system designed to mimic Galileo's Open Service signal using software-defined radio (SDR) technology. We'll begin with a foundational overview of both Global Navigation Satellite Systems (GNSS) and the intricacies of digital signal processing.
The presentation culminates in a live demonstration. We'll showcase the manipulation of Galileo's Open Service pilot signal, simulating an attack on various software and hardware systems. This practical demonstration serves to highlight the potential consequences of unaddressed vulnerabilities, emphasizing the importance of offensive security practices in safeguarding critical infrastructure.
Fueling AI with Great Data with Airbyte WebinarZilliz
This talk will focus on how to collect data from a variety of sources, leveraging this data for RAG and other GenAI use cases, and finally charting your course to productionalization.
"Frontline Battles with DDoS: Best practices and Lessons Learned", Igor IvaniukFwdays
At this talk we will discuss DDoS protection tools and best practices, discuss network architectures and what AWS has to offer. Also, we will look into one of the largest DDoS attacks on Ukrainian infrastructure that happened in February 2022. We'll see, what techniques helped to keep the web resources available for Ukrainians and how AWS improved DDoS protection for all customers based on Ukraine experience
inQuba Webinar Mastering Customer Journey Management with Dr Graham HillLizaNolte
HERE IS YOUR WEBINAR CONTENT! 'Mastering Customer Journey Management with Dr. Graham Hill'. We hope you find the webinar recording both insightful and enjoyable.
In this webinar, we explored essential aspects of Customer Journey Management and personalization. Here’s a summary of the key insights and topics discussed:
Key Takeaways:
Understanding the Customer Journey: Dr. Hill emphasized the importance of mapping and understanding the complete customer journey to identify touchpoints and opportunities for improvement.
Personalization Strategies: We discussed how to leverage data and insights to create personalized experiences that resonate with customers.
Technology Integration: Insights were shared on how inQuba’s advanced technology can streamline customer interactions and drive operational efficiency.
Must Know Postgres Extension for DBA and Developer during MigrationMydbops
Mydbops Opensource Database Meetup 16
Topic: Must-Know PostgreSQL Extensions for Developers and DBAs During Migration
Speaker: Deepak Mahto, Founder of DataCloudGaze Consulting
Date & Time: 8th June | 10 AM - 1 PM IST
Venue: Bangalore International Centre, Bangalore
Abstract: Discover how PostgreSQL extensions can be your secret weapon! This talk explores how key extensions enhance database capabilities and streamline the migration process for users moving from other relational databases like Oracle.
Key Takeaways:
* Learn about crucial extensions like oracle_fdw, pgtt, and pg_audit that ease migration complexities.
* Gain valuable strategies for implementing these extensions in PostgreSQL to achieve license freedom.
* Discover how these key extensions can empower both developers and DBAs during the migration process.
* Don't miss this chance to gain practical knowledge from an industry expert and stay updated on the latest open-source database trends.
Mydbops Managed Services specializes in taking the pain out of database management while optimizing performance. Since 2015, we have been providing top-notch support and assistance for the top three open-source databases: MySQL, MongoDB, and PostgreSQL.
Our team offers a wide range of services, including assistance, support, consulting, 24/7 operations, and expertise in all relevant technologies. We help organizations improve their database's performance, scalability, efficiency, and availability.
Contact us: info@mydbops.com
Visit: https://www.mydbops.com/
Follow us on LinkedIn: https://in.linkedin.com/company/mydbops
For more details and updates, please follow up the below links.
Meetup Page : https://www.meetup.com/mydbops-databa...
Twitter: https://twitter.com/mydbopsofficial
Blogs: https://www.mydbops.com/blog/
Facebook(Meta): https://www.facebook.com/mydbops/
Main news related to the CCS TSI 2023 (2023/1695)Jakub Marek
An English 🇬🇧 translation of a presentation to the speech I gave about the main changes brought by CCS TSI 2023 at the biggest Czech conference on Communications and signalling systems on Railways, which was held in Clarion Hotel Olomouc from 7th to 9th November 2023 (konferenceszt.cz). Attended by around 500 participants and 200 on-line followers.
The original Czech 🇨🇿 version of the presentation can be found here: https://www.slideshare.net/slideshow/hlavni-novinky-souvisejici-s-ccs-tsi-2023-2023-1695/269688092 .
The videorecording (in Czech) from the presentation is available here: https://youtu.be/WzjJWm4IyPk?si=SImb06tuXGb30BEH .
"$10 thousand per minute of downtime: architecture, queues, streaming and fin...Fwdays
Direct losses from downtime in 1 minute = $5-$10 thousand dollars. Reputation is priceless.
As part of the talk, we will consider the architectural strategies necessary for the development of highly loaded fintech solutions. We will focus on using queues and streaming to efficiently work and manage large amounts of data in real-time and to minimize latency.
We will focus special attention on the architectural patterns used in the design of the fintech system, microservices and event-driven architecture, which ensure scalability, fault tolerance, and consistency of the entire system.
What is an RPA CoE? Session 1 – CoE VisionDianaGray10
In the first session, we will review the organization's vision and how this has an impact on the COE Structure.
Topics covered:
• The role of a steering committee
• How do the organization’s priorities determine CoE Structure?
Speaker:
Chris Bolin, Senior Intelligent Automation Architect Anika Systems
GraphRAG for LifeSciences Hands-On with the Clinical Knowledge Graph
Species pages and portals
1. Encyclopedia of Life
Serving the building blocks of biodiversity knowledge
Cynthia Parr @cydparr
Joint Indo-US Workshop on Biodiversity Informatics @eol
Bangelore, 20 January 2013
2. Problems
• Specialist communities make their own
species pages
• Duplicating effort is costly
• Hard to find scattered information
• Not always aimed at the right audience
• Hard to compare and know what to trust
• New applications have to start over
The solution?
3. The solutions
Make sure specialist communities thrive
& develop resources they need
Encourage coordination and sharing with credit
and rewards
Provide tools for data discovery, exchange,
improvement & re-use
4. EOL aggregates and curates
Scientific Databases
Scientific Journals
Direct text contribution
Links to BHL, etc. Curate
Aggregate
Comment
Rate, Collect
eol.org
Quality control API
Third party apps
5. >1.1 million taxon pages with content
from more than 200 providers
1000s individual contributors
5 million content objects
63,000 members
1,163 curators
6.
7. Example biological content
on details tab
EOL Table of Contents TDWG Species Profile Model
Overview › Distribution #Distribution
Physical Description › Morphology #Morphology
Physical Description › Size #Size
Ecology › Habitat #Habitat
Ecology › Associations #Associations
Life History & Behavior › Life Expectancy #LifeExpectancy
Evolution and Systematics › Functional Adaptations #Evolution
Conservation > Conservation Status #ConservationStatus
Molecular Biology and Genetics › Genetics #Genetics
11. EOL curation
Master curators
Full curators
Assistant Curators
Add & prefer common names
Trust or untrust
Fix taxon Set exemplar image
problems Add new ID
Set preferred Members
name and
classification Rate Comment
Add new text
12. Norway
Dutch
USA Taiwan
Mexico China
Egypt
India
Costa
Rica Colombia
Peru
Australia
South Africa
EOL interface now in 12 languages
Via translatewiki.org
22. Summary
• Focus on building blocks
• Multiple audiences
• Scalable
• Sustainable
• Improvable
Building Species Pages workshop 4 – 6pm today
parrc@si.edu
23. Thanks to
Our funders
John D. and Catherine T. MacArthur Foundation
Alfred P. Sloan Foundation
Smithsonian Institution
Marine Biological Laboratory
David Rubenstein
and other funders and donors
All our content providers and global partners
Volunteer curators and individual contributors via Flickr,
Wikimedia, and members of EOL
ATREE and all of you
Editor's Notes
Whirlwind tour to EOLAs you may know, Encyclopedia of Life is a web site providing global access to knowledge about life on earth.Global – the whole worldAccess – free, and freely re-usableKnowledge – synthesized, not rawLife on Earth – biological diversity
EOL takes information from about 200 sources so far, mostly scientific databases, but also including Flickr and Wikipedia, and automatically sorts it onto on taxon pages based on the names. Within each page, the information is sorted by subject. Our curators can then trust or untrust it, or anybody can provide comments or ratings. About a thousand credentialed scientists have already volunteered to help with quality control. Actions and comments get fed back to the original providers, and the material on EOL is also available to other applications via an Application Programming Interface, which I’ll talk more about in a moment.We’re partnering with over two hundred scientific databases as well as public conribution sites like Flickr and Wikipedia.100+ partner databases700 curators/1000s contributors/46,000 members2.8 million pages500 thousand pages with Creative Commons contentOver 2 million data objects and >1 million pages with links to research literatureTraffic in past year: 1.7 million unique users, 6.2 million page views
This is a media gallery for arachnids
Collections might be practical, like helping people learn more about the foods that we eat, like posting lists of wanted things, like this list of microorganisms found by Jessica Green in the air ducts of office buildings.Help people put their information in context that are meaningful to them.Do you want crowds to help annotate items in the collection with a controlled vocabulary? Do you want to know the average riches of pages in the collection?
These are only checklists that have more than one item.
Free for third party applications, as long as licenses are respectedField guidesMobile applicationWeb page widget
You can also use EOL for crowd-sourcing. For example, Jennifer Hammock has started a collection called “Mystery associates” and asked people to try to identify the partners shown in photos that have some sort of ecological association. When they’ve been identified, like this sea star and anemone predation interaction, then she moves the image to the “known associates” collection. This adds to the information we have from a bunch of partners on food web interactions, and then would be available for foodweb modelers. There are many other possible ways that the large crowds on EOL could be harnessed to generate new datasets from EOL content. And this is all possible to some degree now.