Slides from presentation given at COMBINE 2011, in Heidelberg, Germany, on September 4, 2011.

1. General updates about SBML
and SBML Team activities
Michael Hucka and the rest of the SBML Team
Control and Dynamical Systems
Division of Engineering and Applied Science
California Institute of Technology
Pasadena, CA, USA
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2. 1. SBML.org Updates
Outline
2. SBML Development
3. SBML Team Software
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3. SBML.org updates
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4. SBML Software Guide changes
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5. New version of the SBML software survey
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6. Forthcoming in the SBML Software Guide
More data about SBML software in the world
More accurate data about SBML software in the world
Statistics about SBML software in the world
• Examples: data on 81 software tools reported between May–July
MIRIAM 16
SBO 14
Supports SBGN 13
SBML Level 3 BioPAX 6
36% Does not yet CellML 3
support Level 3 SED-ML 3
64% MFAML 1
PNML 1
SBOL 1
0 5 10 15 20
Percentage supporting
Total # tools supporting other standards
SBML Level 3
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7. Updated SBML Level 3 package activity table
http://sbml.org/Community/Wiki
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8. SBML Development
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9. SBML Development Process Progress
http://sbml.org/Documents/SBML_Development_Process
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10. Elaboration of process for Level 3 packages
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11. Further elaboration of package voting criteria
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12. Writing L3 package specs
Proper draft spec. for Hierarchical Model Composition almost ready
New LaTeX templates for SBML package specifications
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13. SBML Editor vote coming up
Chris Jim Lucian
Sarah Frank Yours truly
One new editor being replaced
• Nominations & voting open to anyone on sbml-discuss mailing list
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14. SBML Editor vote coming up
Chris Jim Lucian
Sarah
?
Frank Yours truly
One new editor being replaced
• Nominations & voting open to anyone on sbml-discuss mailing list
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15. SBML Team Software
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16. libSBML 5.0.0: over 3400 downloads since April
800
700
188
600 195 158
500 64
201
93 122
400 147
52 103
126
300 103
119
Source 200
52
40 331
Mac OS X 268 298
Linux 100 215
155
Windows
0
April May June July August
Downloads of all libSBML 5.0.0 distributions since April
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17. Other software news
LibSBML, JSBML, SBMLToolbox, Online SBML Validator, others....
... Listen to Sarah, Frank, Nico & Andreas
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