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A Novel CD19-Anti-CD20 Bridging Protein To Prevent and
Reverse Relapses from CAR-CD19 T Cell Therapy
Characterization, in vitro and in vivo activity
Paul D Rennert, President & CSO, Aleta Biotherapeutics
61st ASH Annual Meeting
December 7-10, 2019
Orlando, FL
Approved CAR-CD19 Therapies Have Changed the Clinical
Treatment Paradigm For B-cell Tumors…
CAR-CD19 T cell therapies have
been approved for subsets of r/r
NHL and ALL
2 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
CAR-CD19 therapy: responses & relapses
• CAR-CD19 therapy produces high complete
response rates in NHL and ALL
• The high CR rate is impacted by relapses
– Some have relapsed with CD19-negative or
dim tumors
– Some have had a suboptimal response and
have failed to clear the tumor burden
• Patients can relapse with CAR-CD19 T cells
still present
3 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
* calculated from Majzner & Mackall, Nat Med. 2019
CR rate relapse rate
% CD19-
relapses
72.4% 35% 41%
r/r pediatric and adult ALL and NHL (multiple
centers, CD28 and 4-1BB based-constructs*)
4
Most relapses occur in the first 6 months or less
Pediatric ALL
Tisagenlecleucel, Ph2
Adult NHL
Axicabtagene Ciloleucel, Ph1
61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
Maude et al 2018. NEJM
Neelapu, Locke et al 2017. NEJM
Can we rescue the CAR-CD19 activity?
• We created a CD19 – anti-CD20 bridging protein
⎼ The CD19 extracellular domain will bind anti-CD19 CARs and
will bind CD20 on the target tumor cell
⎼ Re-stimulate any CAR19 present in the patient by providing
additional antigen
• CD20 is expressed in virtually all NHL cases and 30-40%
of ALL cases
• CD20 expression is relatively insensitive to selection
pressure: CD20 escapes are uncommon
5 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
CD19 anti-CD20
This protein bridges CAR-
CD19 T cells to tumor
cells, forming a cytotoxic
synapse and triggering
tumor cell killing
Retargeting and therefore reactivating CAR-CD19 T cells
CAR19
B Cell Tumor
6 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
CD19 anti-CD20
CD20
anti-CD19
CAR-T Cell B Cell Tumor
Characterizing bridging proteins
7 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
binding EC50 cytotoxicity IC50
prototype 6.7 nM 143 pM / 8 ng/ml
candidate - 1 3.6 nM 66 pM / 3.8 ng/ml
candidate - 2 1.3 nM 22 pM / 1.3 ng/ml
• Small protein
• High affinity binding
• Potent mediator of CAR-CD19 cytotoxicity
Prototype
Candidate -1
Candidate -2
Cytotoxicity (+ CAR-CD19 T cells)Cell binding (anti-CD19-PE)
293-CD20
cells
Control
Prototype
Candidate -1
Candidate -2
8
Delivering the bridging protein
• Clone into a CAR-CD19 lentiviral construct as a dual-targeting therapy
• Engineer as an extended half-life biologic for injection
61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
A candidate bridging protein cloned downstream of a CAR-CD19
“CD20-bridging CAR19 T cell”
9 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
Promoter CAR19 2A dual epitope bridging protein
CAR19
CD19-anti-CD20
CAR-CD19 Bridging protein
binding EC50 cytotoxicity IC50
candidate - 2 1.3 nM 22 pM / 1.3 ng/ml
10 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
CD20-bridging CAR19 T cell activity in vitro
• Bridging protein secretion measured at 10 ng/ml in vitro
• High affinity binding to CAR-CD19 and to CD20 (1 -2 nM)
0.00%
20.00%
40.00%
60.00%
80.00%
100.00%
E:T
30:1
10:1
3:1
1:1
UTD CAR-CD19 CD20-bridging
CAR19
JeKo (CD19+/CD20+)
0.00%
20.00%
40.00%
60.00%
80.00%
100.00%
Donor 45
Donor 38
30:1 10:1 3:1 1:1
OC1-Ly3 (CD19-/CD20+)
CD20-bridging CAR19 T cells
11
Two means of delivery
• Cloned into a CAR-CD19 lentiviral construct
• Engineered as a biologic with extended half-life
61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
CD19 – anti-CD20anti-albumin-VHH
• Added to a novel series of CD20 binders
• Albumin binding provides FcRN-mediated half-life
extension of ~ 3 weeks
• Importantly, binding to albumin does not functionally
multimerize the bound protein, cf. Fc-fusions
12 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
In vitro characterization of half-life extended bridging proteins
• Highly purified monomeric proteins from standard mammalian expression culture
• Do not induce tonic signaling when bound to CAR-CD19
• Stable at 37oC in serum x 3 days: no aggregation, no clipping
• Potent binding, potently cytotoxic in the presence of CD20-positive cells and CAR-CD19 T cells
Prototype bridging protein - anti-albumin
Candidate bridging protein
Candidate bridging protein - anti-albumin
prototype-anti-alb novel BP novel BP-anti-alb
IC50 (ng/mL) 1 0.04 0.04
IC50 14.4 pM 0.84 pM 0.69 pM
13 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
In vitro model of antigen heterogeneity
293-CD19 293-CD20
co-culture
0
20
40
60
80
100
%killing
CAR-CD19
+ 3 ug/ml + 0.3 ug/ml
l
prototype bridging protein
CAR-CD19
alone
Cells
only
CAR-CD19
+ 3 ug/ml + 0.3 ug/ml
candidate bridging
protein
Cytotoxicity
• This simple experiment demonstrates that the CAR-CD19 can kill directly
(targeting CD19) and indirectly (via the CD19-anti-CD20 bridging protein)
14 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
In vitro model of antigen escape using dual-antigen-positive cells
• JeKo cell line is derived from a mantle cell lymphoma
• These cells brightly express CD19 and CD20
• The vast majority of individual JeKo cells are CD19+/CD20+
• Regardless, these cells are highly proliferative and prone to antigen escape
CD19-PE
CD20-APC
CD19 CD20
Day 1
Day 6
Day 13
1 : 1 0.3 : 1 0.1: 1
B cells
CAR-CD19 T cells
CD20
CD19
CD19+/CD20+
CD19-/CD20+
Establishing antigen escape • JeKo cells targeted by CAR-CD19 T cells
16 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
Reversing antigen escape
• JeKo cells targeted by CAR-CD19 T cells, then by CAR-CD19 T cells with or without bridging protein
ESCAPE mixed populations
Rest x
48 hours
Add excess CAR-CD19 cells (10:1)
Add excess bridging protein (1 mg/ml)
CD19- cells
untouched
no cell death
all target cells
eliminated
Add CAR-CD19 T cells
and bridging protein
(candidate BP – anti-albumin)
(candidate BP – anti-albumin)
17
Delivering the bridging protein in vivo
• CD20-bridging CAR-CD19 T cells
• Extended half-life biologic for injection
61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
18 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
Untreated mice
Untransduced T cells
CAR-CD19 T cells
CAR-CD19 T cells + bridging protein (100ug/q3w)
CD20-bridging CAR19 T cells
Nalm6-luciferase model (CD19+, CD20-)
CD19 CD20
• Nalm6-luciferase, pre-implanted iv x 3 days
• Challenged with CAR-CD19 or CAR-CD19 with bridging protein
delivery
19 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
Day 18
Evolution of escape in the JeKo model (CD19+, CD20+)
Untreated, UTD
Day 32
CAR-CD19 T cells
CAR-CD19 T cells + bridging protein
CD20-bridging CAR19 T cells
Day 28 Untreated mice, untransduced T cells
Day 28
Next steps
• Allow relapse to occur in the JeKo model, then add bridging protein to reverse
• Evaluate PDX models if available (ie. CD19-/CD20+ or mixed phenotype)
• IND in 16 -18 months, Phase 1 dose escalation (single and multiple dose)
• We will enroll patients who are relapsing at < 6 months post-CAR-CD19 infusion
• The Phase 1 PD marker is simple – do the CAR-CD19 T cells expand above baseline?
• CAR T expansion is the single best predictor of therapeutic efficacy; the PD marker is
clinically relevant
20 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
21
Acknowledgements
Aleta Biotherapeutics University of Minnesota Scientific Advisory Board
Christine Ambrose Benjamin Hackel Sarah Tasian, CHOP
Lihe Su Justin Klesmith James Mulé, Moffitt Cancer Center
Lan Wu Ian Schrack Chris Klebanoff, MSKCC
Fay Dufort Christine Brown, City of Hope
Alyssa Bir Funding
Tom Sanford
Roy Lobb Advent Life Sciences
61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL

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Rennert et al. ASH 2019 talk

  • 1. A Novel CD19-Anti-CD20 Bridging Protein To Prevent and Reverse Relapses from CAR-CD19 T Cell Therapy Characterization, in vitro and in vivo activity Paul D Rennert, President & CSO, Aleta Biotherapeutics 61st ASH Annual Meeting December 7-10, 2019 Orlando, FL
  • 2. Approved CAR-CD19 Therapies Have Changed the Clinical Treatment Paradigm For B-cell Tumors… CAR-CD19 T cell therapies have been approved for subsets of r/r NHL and ALL 2 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
  • 3. CAR-CD19 therapy: responses & relapses • CAR-CD19 therapy produces high complete response rates in NHL and ALL • The high CR rate is impacted by relapses – Some have relapsed with CD19-negative or dim tumors – Some have had a suboptimal response and have failed to clear the tumor burden • Patients can relapse with CAR-CD19 T cells still present 3 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL * calculated from Majzner & Mackall, Nat Med. 2019 CR rate relapse rate % CD19- relapses 72.4% 35% 41% r/r pediatric and adult ALL and NHL (multiple centers, CD28 and 4-1BB based-constructs*)
  • 4. 4 Most relapses occur in the first 6 months or less Pediatric ALL Tisagenlecleucel, Ph2 Adult NHL Axicabtagene Ciloleucel, Ph1 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL Maude et al 2018. NEJM Neelapu, Locke et al 2017. NEJM
  • 5. Can we rescue the CAR-CD19 activity? • We created a CD19 – anti-CD20 bridging protein ⎼ The CD19 extracellular domain will bind anti-CD19 CARs and will bind CD20 on the target tumor cell ⎼ Re-stimulate any CAR19 present in the patient by providing additional antigen • CD20 is expressed in virtually all NHL cases and 30-40% of ALL cases • CD20 expression is relatively insensitive to selection pressure: CD20 escapes are uncommon 5 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL CD19 anti-CD20 This protein bridges CAR- CD19 T cells to tumor cells, forming a cytotoxic synapse and triggering tumor cell killing
  • 6. Retargeting and therefore reactivating CAR-CD19 T cells CAR19 B Cell Tumor 6 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL CD19 anti-CD20 CD20 anti-CD19 CAR-T Cell B Cell Tumor
  • 7. Characterizing bridging proteins 7 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL binding EC50 cytotoxicity IC50 prototype 6.7 nM 143 pM / 8 ng/ml candidate - 1 3.6 nM 66 pM / 3.8 ng/ml candidate - 2 1.3 nM 22 pM / 1.3 ng/ml • Small protein • High affinity binding • Potent mediator of CAR-CD19 cytotoxicity Prototype Candidate -1 Candidate -2 Cytotoxicity (+ CAR-CD19 T cells)Cell binding (anti-CD19-PE) 293-CD20 cells Control Prototype Candidate -1 Candidate -2
  • 8. 8 Delivering the bridging protein • Clone into a CAR-CD19 lentiviral construct as a dual-targeting therapy • Engineer as an extended half-life biologic for injection 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
  • 9. A candidate bridging protein cloned downstream of a CAR-CD19 “CD20-bridging CAR19 T cell” 9 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL Promoter CAR19 2A dual epitope bridging protein CAR19 CD19-anti-CD20 CAR-CD19 Bridging protein binding EC50 cytotoxicity IC50 candidate - 2 1.3 nM 22 pM / 1.3 ng/ml
  • 10. 10 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL CD20-bridging CAR19 T cell activity in vitro • Bridging protein secretion measured at 10 ng/ml in vitro • High affinity binding to CAR-CD19 and to CD20 (1 -2 nM) 0.00% 20.00% 40.00% 60.00% 80.00% 100.00% E:T 30:1 10:1 3:1 1:1 UTD CAR-CD19 CD20-bridging CAR19 JeKo (CD19+/CD20+) 0.00% 20.00% 40.00% 60.00% 80.00% 100.00% Donor 45 Donor 38 30:1 10:1 3:1 1:1 OC1-Ly3 (CD19-/CD20+) CD20-bridging CAR19 T cells
  • 11. 11 Two means of delivery • Cloned into a CAR-CD19 lentiviral construct • Engineered as a biologic with extended half-life 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL CD19 – anti-CD20anti-albumin-VHH • Added to a novel series of CD20 binders • Albumin binding provides FcRN-mediated half-life extension of ~ 3 weeks • Importantly, binding to albumin does not functionally multimerize the bound protein, cf. Fc-fusions
  • 12. 12 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL In vitro characterization of half-life extended bridging proteins • Highly purified monomeric proteins from standard mammalian expression culture • Do not induce tonic signaling when bound to CAR-CD19 • Stable at 37oC in serum x 3 days: no aggregation, no clipping • Potent binding, potently cytotoxic in the presence of CD20-positive cells and CAR-CD19 T cells Prototype bridging protein - anti-albumin Candidate bridging protein Candidate bridging protein - anti-albumin prototype-anti-alb novel BP novel BP-anti-alb IC50 (ng/mL) 1 0.04 0.04 IC50 14.4 pM 0.84 pM 0.69 pM
  • 13. 13 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL In vitro model of antigen heterogeneity 293-CD19 293-CD20 co-culture 0 20 40 60 80 100 %killing CAR-CD19 + 3 ug/ml + 0.3 ug/ml l prototype bridging protein CAR-CD19 alone Cells only CAR-CD19 + 3 ug/ml + 0.3 ug/ml candidate bridging protein Cytotoxicity • This simple experiment demonstrates that the CAR-CD19 can kill directly (targeting CD19) and indirectly (via the CD19-anti-CD20 bridging protein)
  • 14. 14 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL In vitro model of antigen escape using dual-antigen-positive cells • JeKo cell line is derived from a mantle cell lymphoma • These cells brightly express CD19 and CD20 • The vast majority of individual JeKo cells are CD19+/CD20+ • Regardless, these cells are highly proliferative and prone to antigen escape CD19-PE CD20-APC CD19 CD20
  • 15. Day 1 Day 6 Day 13 1 : 1 0.3 : 1 0.1: 1 B cells CAR-CD19 T cells CD20 CD19 CD19+/CD20+ CD19-/CD20+ Establishing antigen escape • JeKo cells targeted by CAR-CD19 T cells
  • 16. 16 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL Reversing antigen escape • JeKo cells targeted by CAR-CD19 T cells, then by CAR-CD19 T cells with or without bridging protein ESCAPE mixed populations Rest x 48 hours Add excess CAR-CD19 cells (10:1) Add excess bridging protein (1 mg/ml) CD19- cells untouched no cell death all target cells eliminated Add CAR-CD19 T cells and bridging protein (candidate BP – anti-albumin) (candidate BP – anti-albumin)
  • 17. 17 Delivering the bridging protein in vivo • CD20-bridging CAR-CD19 T cells • Extended half-life biologic for injection 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
  • 18. 18 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL Untreated mice Untransduced T cells CAR-CD19 T cells CAR-CD19 T cells + bridging protein (100ug/q3w) CD20-bridging CAR19 T cells Nalm6-luciferase model (CD19+, CD20-) CD19 CD20 • Nalm6-luciferase, pre-implanted iv x 3 days • Challenged with CAR-CD19 or CAR-CD19 with bridging protein delivery
  • 19. 19 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL Day 18 Evolution of escape in the JeKo model (CD19+, CD20+) Untreated, UTD Day 32 CAR-CD19 T cells CAR-CD19 T cells + bridging protein CD20-bridging CAR19 T cells Day 28 Untreated mice, untransduced T cells Day 28
  • 20. Next steps • Allow relapse to occur in the JeKo model, then add bridging protein to reverse • Evaluate PDX models if available (ie. CD19-/CD20+ or mixed phenotype) • IND in 16 -18 months, Phase 1 dose escalation (single and multiple dose) • We will enroll patients who are relapsing at < 6 months post-CAR-CD19 infusion • The Phase 1 PD marker is simple – do the CAR-CD19 T cells expand above baseline? • CAR T expansion is the single best predictor of therapeutic efficacy; the PD marker is clinically relevant 20 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL
  • 21. 21 Acknowledgements Aleta Biotherapeutics University of Minnesota Scientific Advisory Board Christine Ambrose Benjamin Hackel Sarah Tasian, CHOP Lihe Su Justin Klesmith James Mulé, Moffitt Cancer Center Lan Wu Ian Schrack Chris Klebanoff, MSKCC Fay Dufort Christine Brown, City of Hope Alyssa Bir Funding Tom Sanford Roy Lobb Advent Life Sciences 61st ASH Annual Meeting, December 7-10, 2019, Orlando, FL