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1
Strings and Pattern Matching
2
Brute Force
• The Brute Force algorithm compares the pattern to the text, one
character at a time, until unmatching characters are found
Compared characters are italicized.
Correct matches are in boldface type.
• The algorithm can be designed to stop on either the first
occurrence of the pattern, or upon reaching the end of the text.
3
Brute Force Pseudo-Code
• Here’s the pseudo-code
do if (text letter == pattern letter)
compare next letter of pattern to next
letter of text
else move pattern down text by one letter
while (entire pattern found or end of text)
4
Brute Force-Complexity
• Given a pattern M characters in length, and a text N characters in
length...
• Worst case: compares pattern to each substring of text of length M.
For example, M=5.
• This kind of case can occur for image data.
Total number of comparisons: M (N-M+1)
Worst case time complexity: O(MN)
5
Brute Force-Complexity(cont.)
• Given a pattern M characters in length, and a text N characters in
length...
• Best case if pattern found: Finds pattern in first M positions of text.
For example, M=5.
Total number of comparisons: M
Best case time complexity: O(M)
6
Brute Force-Complexity(cont.)
• Given a pattern M characters in length, and a text N characters in
length...
• Best case if pattern not found: Always mismatch on first character.
For example, M=5.
Total number of comparisons: N
Best case time complexity: O(N)
7
Rabin-Karp
• The Rabin-Karp string searching algorithm calculates a hash value
for the pattern, and for each M-character subsequence of text to be
compared.
• If the hash values are unequal, the algorithm will calculate the hash
value for next M-character sequence.
• If the hash values are equal, the algorithm will do a Brute Force
comparison between the pattern and the M-character sequence.
• In this way, there is only one comparison per text subsequence, and
Brute Force is only needed when hash values match.
8
Rabin-Karp Example
• Hash value of “AAAAA” is 37
• Hash value of “AAAAH” is 100
9
Rabin-Karp Algorithm
pattern is M characters long
hash_p=hash value of pattern
hash_t=hash value of first M letters in body of text
do
if (hash_p == hash_t)
brute force comparison of pattern and selected section of text
hash_t= hash value of next section of text, one character over
while (end of text)
11
Hash Function
• Let b be the number of letters in the alphabet. The text subsequence
t[i .. i+M-1] is mapped to the number
• Furthermore, given x(i) we can compute x(i+1) for the next
subsequence t[i+1 .. i+M] in constant time, as follows:
• In this way, we never explicitly compute a new value. We
simply adjust the existing value as we move over one
character.
12
Rabin-Karp Math Example
• Let’s say that our alphabet consists of 10 letters.
• our alphabet = a, b, c, d, e, f, g, h, i, j
• Let’s say that “a” corresponds to 1, “b” corresponds to 2 and so
on.
The hash value for string “cah” would be ...
3*100 + 1*10 + 8*1 = 318
13
Rabin-Karp Mods
• If M is large, then the resulting value (~bM) will be enormous. For this
reason, we hash the value by taking it mod a prime number q.
• The mod function is particularly useful in this case due to several of its
inherent properties:
[(x mod q) + (y mod q)] mod q = (x+y) mod q
(x mod q) mod q = x mod q
• For these reasons:
h(i)=((t[i] bM-1 mod q) +(t[i+1] bM-2 mod q) + … +(t[i+M-1] mod q))mod q
h(i+1) =( h(i) b mod q
Shift left one digit
-t[i] bM mod q
Subtract leftmost digit
+t[i+M] mod q )
Add new rightmost digit
mod q
14
Rabin-Karp Complexity
• If a sufficiently large prime number is used for the hash function,
the hashed values of two different patterns will usually be distinct.
• If this is the case, searching takes O(N) time, where N is the
number of characters in the larger body of text.
• It is always possible to construct a scenario with a worst case
complexity of O(MN). This, however, is likely to happen only if
the prime number used for hashing is small.

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Rabin-Karp (2).ppt

  • 2. 2 Brute Force • The Brute Force algorithm compares the pattern to the text, one character at a time, until unmatching characters are found Compared characters are italicized. Correct matches are in boldface type. • The algorithm can be designed to stop on either the first occurrence of the pattern, or upon reaching the end of the text.
  • 3. 3 Brute Force Pseudo-Code • Here’s the pseudo-code do if (text letter == pattern letter) compare next letter of pattern to next letter of text else move pattern down text by one letter while (entire pattern found or end of text)
  • 4. 4 Brute Force-Complexity • Given a pattern M characters in length, and a text N characters in length... • Worst case: compares pattern to each substring of text of length M. For example, M=5. • This kind of case can occur for image data. Total number of comparisons: M (N-M+1) Worst case time complexity: O(MN)
  • 5. 5 Brute Force-Complexity(cont.) • Given a pattern M characters in length, and a text N characters in length... • Best case if pattern found: Finds pattern in first M positions of text. For example, M=5. Total number of comparisons: M Best case time complexity: O(M)
  • 6. 6 Brute Force-Complexity(cont.) • Given a pattern M characters in length, and a text N characters in length... • Best case if pattern not found: Always mismatch on first character. For example, M=5. Total number of comparisons: N Best case time complexity: O(N)
  • 7. 7 Rabin-Karp • The Rabin-Karp string searching algorithm calculates a hash value for the pattern, and for each M-character subsequence of text to be compared. • If the hash values are unequal, the algorithm will calculate the hash value for next M-character sequence. • If the hash values are equal, the algorithm will do a Brute Force comparison between the pattern and the M-character sequence. • In this way, there is only one comparison per text subsequence, and Brute Force is only needed when hash values match.
  • 8. 8 Rabin-Karp Example • Hash value of “AAAAA” is 37 • Hash value of “AAAAH” is 100
  • 9. 9 Rabin-Karp Algorithm pattern is M characters long hash_p=hash value of pattern hash_t=hash value of first M letters in body of text do if (hash_p == hash_t) brute force comparison of pattern and selected section of text hash_t= hash value of next section of text, one character over while (end of text)
  • 10. 11 Hash Function • Let b be the number of letters in the alphabet. The text subsequence t[i .. i+M-1] is mapped to the number • Furthermore, given x(i) we can compute x(i+1) for the next subsequence t[i+1 .. i+M] in constant time, as follows: • In this way, we never explicitly compute a new value. We simply adjust the existing value as we move over one character.
  • 11. 12 Rabin-Karp Math Example • Let’s say that our alphabet consists of 10 letters. • our alphabet = a, b, c, d, e, f, g, h, i, j • Let’s say that “a” corresponds to 1, “b” corresponds to 2 and so on. The hash value for string “cah” would be ... 3*100 + 1*10 + 8*1 = 318
  • 12. 13 Rabin-Karp Mods • If M is large, then the resulting value (~bM) will be enormous. For this reason, we hash the value by taking it mod a prime number q. • The mod function is particularly useful in this case due to several of its inherent properties: [(x mod q) + (y mod q)] mod q = (x+y) mod q (x mod q) mod q = x mod q • For these reasons: h(i)=((t[i] bM-1 mod q) +(t[i+1] bM-2 mod q) + … +(t[i+M-1] mod q))mod q h(i+1) =( h(i) b mod q Shift left one digit -t[i] bM mod q Subtract leftmost digit +t[i+M] mod q ) Add new rightmost digit mod q
  • 13. 14 Rabin-Karp Complexity • If a sufficiently large prime number is used for the hash function, the hashed values of two different patterns will usually be distinct. • If this is the case, searching takes O(N) time, where N is the number of characters in the larger body of text. • It is always possible to construct a scenario with a worst case complexity of O(MN). This, however, is likely to happen only if the prime number used for hashing is small.