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RSC|ChemSpider is one of the world’s largest online resources for chemistry related data and services. Developed with the intention of delivering access to structure-based chemistry data via the internet the ChemSpider platform hosts over 26 million unique chemical compounds aggregated from over 400 data sources and provides an environment for the community to both annotate and curate these existing data as well as deposit new data to the system. The search system delivers flexible querying capabilities together with links to external sites for publication and patent data. ChemSpider has spawned a number of projects include ChemSpider SyntheticPages for hosting openly peer-reviewed chemical synthesis articles. This presentation will review the present capabilities of the ChemSpider system providing direct examples of how to use the system to source high quality data of value to pharmaceutical companies. We will discuss some of the challenges associated with validating data quality, examine how ChemSpider is a part of the semantic web for chemistry and investigate approaches to using ChemSpider integrated to analytical instrumentation.
Scholarly Communication for Bioinformatics StudentsPhilip Bourne
Presentation made to the incoming bioinformatics and systems biology students at UCSD on how they could get involved in changing scholarly communication. Given February 28, 2011
RSC|ChemSpider is one of the world’s largest online resources for chemistry related data and services. Developed with the intention of delivering access to structure-based chemistry data via the internet the ChemSpider platform hosts over 26 million unique chemical compounds aggregated from over 400 data sources and provides an environment for the community to both annotate and curate these existing data as well as deposit new data to the system. The search system delivers flexible querying capabilities together with links to external sites for publication and patent data. ChemSpider has spawned a number of projects include ChemSpider SyntheticPages for hosting openly peer-reviewed chemical synthesis articles. This presentation will review the present capabilities of the ChemSpider system providing direct examples of how to use the system to source high quality data of value to pharmaceutical companies. We will discuss some of the challenges associated with validating data quality, examine how ChemSpider is a part of the semantic web for chemistry and investigate approaches to using ChemSpider integrated to analytical instrumentation.
EJME: enriched journal articles with OJS, 2011-10-19Driek Heesakkers
Presenting Enhanced Journals Made Easy.
This presentation has screenshots of all the steps in the submit-edit-publish procedure in OJS with EJME plugin.
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Living in the Cloud: Hosting Data & Apps Using the Google Infrastructureguest517f2f
In the modern web, the user rules. Nearly every successful web app has to worry about scaling to an exponentially growing user base and giving those users multiple ways of interacting with their data. Pamela Fox, Maps API Support Engineer & Developer advocate, provides an overview of two technologies - Google App Engine and the Google Data APIs - that aim to make web development and data portability easier.
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EJME: enriched journal articles with OJS, 2011-10-19Driek Heesakkers
Presenting Enhanced Journals Made Easy.
This presentation has screenshots of all the steps in the submit-edit-publish procedure in OJS with EJME plugin.
Using Fedora Commons To Create A Persistent ArchivePhil Cryer
With the increasing amount of digital data and demand for open access to view and reuse such data continually increasing, the adoption of open source digital repository software is critical for long term storage and management of digital objects. By utilizing the open source Fedora Commons software, the Missouri Botanical Garden has created a stable, persistent archive for Tropicos digital objects, including specimen images, plant photos, and other digital media. Metadata, organized in standard Dublin Core extracted from Tropicos, are stored alongside the digital objects providing search and sharing of data via open standards such as REST and OAI, opening the door for mash-ups and alternative uses. The presentation will cover initial discovery, required hardware and software, and an overview of our experience implementing Fedora Commons. Lessons learned, pros and cons, and other options will also be covered.
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In the modern web, the user rules. Nearly every successful web app has to worry about scaling to an exponentially growing user base and giving those users multiple ways of interacting with their data. Pamela Fox, Maps API Support Engineer & Developer advocate, provides an overview of two technologies - Google App Engine and the Google Data APIs - that aim to make web development and data portability easier.
Living in the Cloud: Hosting Data & Apps Using the Google Infrastructureguest517f2f
In the modern web, the user rules. Nearly every successful web app has to worry about scaling to an exponentially growing user base and giving those users multiple ways of interacting with their data. Pamela Fox, Maps API Support Engineer & Developer advocate, provides an overview of two technologies - Google App Engine and the Google Data APIs - that aim to make web development and data portability easier.
The Research Data Alliance (RDA) has developed a Catalogue of Metadata standards and tools aimed at researchers and those who support them. In its new version, the Metadata Standards Catalog will provide much greater detail about metadata standards and tools, and through its new API - it will be usable within other applications. It will also provide a platform for furthering the work of the RDA Metadata Interest Group, which is seeking to improve the interoperability of metadata in different standards by working towards semi-automatically generated converters.
An examination of the current data portability design patterns used in Social Media sites. Looking at a possible new Open Stack concept to create true plug and play interfaces for user to exchange data.
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https://alandix.com/academic/papers/synergy2024-epistemic/
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Plant Name Services Using Tropicos
1. PLANT NAME SERVICES USING TROPICOS Chuck Miller Vice President, IT & CIO Chris Freeland Director, Center for Biodiversity Informatics http://tropicos.org http://services.tropicos.org
19. API Usage Stats Harvesting by Encyclopedia of Life 176,280 requests in one day All APIs combined have received more than 17mil requests since 1 Jan 2011 Sample: Get Synonyms
![Tropicos History ,[object Object],[object Object],Dr. Robert Magill, ca. 1984, with Tropicos hardware.](data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7)