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Water Significance and Contamination 
Water is essential for all forms of 
life and certain human activities. 
In the course of survival, certain 
living organisms may contaminate 
water required for use by others. 
Human activities may also lead to 
contamination of water sources 
with toxic substances.
Why control water standards? 
Health and survival of man and other 
organisms depends on the purity of the 
water they use. 
Different measures are used to access and 
control water quality with varying degrees 
of relevance and acceptability. 
Hence the need to adopt generalized 
methods of assessment and arbitrary 
standards for water quality.
Water Quality Assessment 
Water 
Quality 
Physical Chemical Microbial
Water Quality Parameters 
• Turbidity 
• Palatability 
• Conductivity 
• Total Dissolved Solutes 
• Organoleptic Properties 
• etc 
Physical 
• pH 
• Dissolved Oxygen Concentration 
• Residual Free Chlorine 
• Radionuclides 
• Organic/ inorganic Chemical Contents 
• etc 
Chemical 
• Faecal Coliform Count 
• Total Coliform Count 
• Faecal Streptococci 
• Cysts/ Ova of Parasites 
Microbial
Microbiological Analysis 
Offers the most sensitive test for the 
detection of recent and potentially 
dangerous faecal pollution 
Provides a hygienic assessment of water 
quality with high sensitivity and 
specificity 
It is important to examine water 
sources frequently by simple tests 
rather than infrequently by more 
complicated test or series of tests
Indicator Organisms 
Investigation for individual specific 
pathogens is rarely practical since they 
are fewer in numbers than the non-pathogenic 
organisms and their 
detection methods are too demanding. 
 Therefore, indicators of human/animal 
pollution e.g. coliforms are used to 
access water quality.
Indicators 
E. coli 
Faecal Coliforms 
Total Coliforms 
Faecal Streptococci
Indicator Organisms Cont’d 
Escherichia coli 
•Found in human and 
animal faeces; in 
sewage, treated 
effluents, and natural 
waters subjected to 
faecal contamination 
•Up to 109 per gram in 
fresh faeces. 
•Routine identification 
is complex, but tests are 
available for rapid 
reliable identification. 
Faecal coliforms 
•Genus Escherichia and 
some spp of Klebsiella, 
Enterobacter and 
Citrobacter 
•May originate from 
organically enriched 
water or from decaying 
matter. 
•Rarely regrow in the 
distribution system
Indicator Organisms Cont’d 
Total Coliforms 
•Gram-ve, bacilli tolerant to 
bile salts. 
•Not necessarily faecal 
bacteria. 
•Should not be detected in 
treated water and, if found, 
suggest inadequate 
treatment, post treatment 
contamination, or excessive 
nutrients. 
• Test used as an indicator 
both of treatment efficiency 
and of the integrity of the 
distribution system. 
Faecal streptococci 
• Present in the faeces human 
and animal faeces. 
•Belong to the genera 
Enterococcus and 
Streptococcus 
•Most spp are of faecal origin 
and indicate faecal 
contamination. 
•Rarely multiply in polluted 
water, and are more 
persistent than the coliforms. 
•Indicators of treatment 
efficiency.
Sampling Sampling from a tap or pump 
outlet 
 Remove any attachments from tap that 
may cause splashing. 
 Wipe off the dirt from outside the tap. 
 Turn on the tap at maximum flow rate 
and let the water flow for 1-2 minutes. 
 Sterilize it for a minute with flame 
using gas burner, lighter or ignited 
cotton wool soaked in spirit. 
 Open the tap and allow water to flow 
at medium rate for 1-2 minutes. 
 Open the container for collecting the 
sample and fill the water by holding 
the bottle under the water jet. Leave a 
small airspace to facilitate shaking at 
thetime of inoculation prior to 
analysis. 
 Stopper the cap and label the 
container. 
Sampling from reservoir 
 Submerge the bottle in the 
water. 
 Open the bottle inside of the 
water. 
 Fill it by holding it by the lower 
part, submerging it to a depth 
of about 30 centimetres, with 
the mouth facing slightly 
upwards. If there is a current, 
the bottle should face the 
current. 
 Pull it out when the bottle is 
filled. 
 Discard a little water to provide 
airspace 
 Stopper the bottle and label it.
Methods for Microbial Analysis 
Microbial 
Analysis 
Membrane 
filtration 
method 
Multiple-tube 
method
Sampling cont’d 
Sampling from a dug well 
 Attach a stone of suitable size to the sampling bottle with a 
piece of string. 
 Tie a 20 meter length of clean string on the bottle and to a 
stick. 
 Open the bottle as described above and lower into the well. 
 Immerse the bottle completely in water without touching 
the sides of the well and lower it down to the bottom of the 
well. 
 Pull it out when the bottle is filled. 
 6. Discard a little water to provide airspace. 
 7. Stopper and label the bottle.
Membrane Filtration Method 
Aseptically introduce sample 
into sterile membrane filter 
assembly ( 0.2 or 0.45 μm) 
Filter retains indicator 
organisms 
Transfer to a suitable culture 
medium and incubate 
Count colonies and report 
results in CFU /100 ml
Membrane filtration machine
Multiple-tube method 
Add different measured sample 
volumes of to tubes containing a 
suitable culture medium 
Organisms reproduce and 
produce acid with or 
without gas 
Statistically determine MPN of 
organisms in the original 
sample
Principle 
 Separate analyses are usually conducted on five portions of each 
of three serial dilutions of a water sample. 
 The individual portions are used to inoculate tubes of culture 
medium that are then incubated at a standard temperature for a 
standard period of time. 
 The presence of coliforms is indicated by turbidity in the culture 
medium, by a pH change and/or by the presence of gas. 
 The MPN index is determined by comparing the pattern of 
positive results (the number of tubes showing growth at each 
dilution) with statistical tables. 
 The tabulated value is reported as MPN per 100 ml of sample.
Culture media 
Medium uses Incubation periods 
Lactose broth Total or thermotolerant 
Isolation media 
Double strength broth: Dissolve 71.2 g of lauryl sulphate broth in 1 litre distilled 
water. 
 After solubilisation, dispense 10 ml into each test tube containing inverted Durhan-tubes. 
 Sterilise by autoclaving at 121°C for 15 minutes. Cool down slowly to prevent bubbles in 
Durhan-tubes. 
Single strength broth: Dissolve 35.6 g of lauryl sulphate broth in 1 litre distilled 
water. 
 After solubilisation, dispense 10 ml into each test tube containing inverted Durhan-tubes. 
 Sterilise by autoclaving at 121°C for 15 minutes. Cool down slowly to prevent bubbles in 
Durhan-tubes. 
coliforms 
48 hours at 35 ± 0.5 °C or 37 
± 0.5 °C for total coliforms 
and 24 hours at 44 ± 0.25 °C 
or 44.5 ± 0.25 °C for 
thermotolerant coliforms 
MacConkey 
Broth & Lauryl tryptose 
(lactose) broth 
Total or 
thermotolerant 
coliforms 
48 hours at 35 ± 0.5 °C or 37 
± 0.5 °C for total coliforms 
and 24 hours at 44 ± 0.25 °C 
or 44.5 ± 0.25 °C for 
thermotolerant coliforms
 Prepare the required number of tubes of culture medium. 
The volume and strength (single or double) of medium in 
the tubes will vary depending on the expected 
bacteriological density in the water and the dilution series 
planned. 
 Select and prepare a range of sample dilutions 
 Pipette the appropriate volumes of sample and diluted 
sample into the tubes of medium 
 Label the tubes with the sample reference number, the 
dilution and the volume of sample (or dilution) added to 
the tube. 
 Shake gently to mix the sample with the medium. Place the 
rack in an incubator or water-bath for 48 hours at 35 ± 0.5 
ºC or 37 ± 0.5 ºC.
Procedure cont’d 
 After 18 or 24 hours, note which tubes show growth. 
 Tubes that show turbidity and gas production, or a colour change 
indicating the production of acid (if the medium contains a pH 
indicator), are regarded as positive 
 Return the tubes to the incubator and re-examine after a total of 48 
hours of incubation. Continue with the next step of the procedure. 
Confirmatory test 
 Prepare the required number of tubes of confirmation culture medium 
(BGLB broth for total coliforms and E. coli medium for faecal 
coliforms). 
 Using a sterile wire loop, transfer inocula from positive tubes into the 
confirmation medium 
 Incubate them for 48 hours at 35 ± 0.5 °C or 37 ± 0.5 °C for total 
coliforms (BGLB broth) or for 24 hours at 44 ± 0.5 °C for faecal 
coliforms (E. coli medium)
Procedure cont’d 
 After the prescribed incubation time, note which tubes 
show growth with the production of gas, 
and record the number of positives for each sample 
dilution 
 The test organism is cultured in a 
medium which contains 
tryptophane, kovac’s reagent 
added to confirm indole 
production 
 Compare the pattern of positive results with a most 
probable number table such as one of those given in Tables
Typical sample volumes and number of tubes for multiple fermentation tube 
analysis 
Sample 50ml 10ml 1ml 0.1 0.01ml 
Treated 
drinking-water 
1 
1 5 
Partially 
treated 
drinking 
water 
5 5 5 
Recreational 
water 
5 5 5 
Protected 
source water 
5 5 5
Membrane Filtration... 
Method involves 
comparatively 
simpler 
procedures. 
Technique is 
inappropriate for 
highly turbid 
waters. 
Filters may be 
expensive in 
some countries.
MPN statistical table 
Combination of 
positive 
MPN index /100ml 95% confidence level 
Upper lower 
0 0 0 < 2 - - 
0 0 1 2 1 10 
1 1 0 4 1 15 
2 1 0 7 2 20
Multiple-tube method... 
Method is applicable 
to all kinds of water: 
clear, coloured, or turbid 
containing sewage, sludge, 
mud or soil particles, 
provided the contaminants 
in the prepared test samples 
are homogeneously 
Distributed. 
Method is 
comparatively 
complex.
Water Quality Standards 
Regulations on the purity of water 
used for various purposes. 
Mandatory limits concerning 
constituents and contaminants of 
water known to be hazardous 
and/or cause inconveniencies. 
Sets of procedures and practices 
required to meet the mandatory 
limits.
Water Quality Standards 
Water Quality 
Standards 
Surface Water 
Quality 
Standards 
Drinking 
Water Quality 
Standards
Water Quality Parameters 
Physical properties 
Chemical / Inorganic Substances 
Organic Constituents 
Disinfectants and their by-products 
Radionuclides 
Microbiological Parameters.
ISO Drinking Water Quality Standard
Quality Standards of Water( Summary) 
Physical 
parameter 
Fresh water Communal 
water 
Trout water High quality 
water 
Turbidity 50/25 NTU 10 NTU < 10 NTU 
Temperature RT RT RT RT 
Hardness 100mg/l cacO3 
Chemical 
parameter 
Fresh water Communal 
water 
Trout water High quality 
water 
pH 6-9 6.8-8.5 7 
Salinity N N N N 
Chlorine 230mg/l 250mg/l N 
Alluminum 87ug/l 6500ug/l 
Dessolved 
Not less than 
Not less than 
oxygen 
5.mg/l 
6mg/l 
Not less than 
6mg/l
Quality Standards of Water cont’d 
Bacteriological 
Fresh water Communal water High quality 
parameter 
water 
Enterococcus 35org. /100ml 
Feacal coliforms 200org. /100ml 
Key: 
NTU- Neplelometric Tubidity Unit 
RT- Room Temperature 
N- Normal 
Refer to Table 1. Microbial Examination of Water and Water Quality Standards (group 
2) for more detail

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Microbiological examination of water2

  • 1.
  • 2. Water Significance and Contamination Water is essential for all forms of life and certain human activities. In the course of survival, certain living organisms may contaminate water required for use by others. Human activities may also lead to contamination of water sources with toxic substances.
  • 3. Why control water standards? Health and survival of man and other organisms depends on the purity of the water they use. Different measures are used to access and control water quality with varying degrees of relevance and acceptability. Hence the need to adopt generalized methods of assessment and arbitrary standards for water quality.
  • 4. Water Quality Assessment Water Quality Physical Chemical Microbial
  • 5. Water Quality Parameters • Turbidity • Palatability • Conductivity • Total Dissolved Solutes • Organoleptic Properties • etc Physical • pH • Dissolved Oxygen Concentration • Residual Free Chlorine • Radionuclides • Organic/ inorganic Chemical Contents • etc Chemical • Faecal Coliform Count • Total Coliform Count • Faecal Streptococci • Cysts/ Ova of Parasites Microbial
  • 6. Microbiological Analysis Offers the most sensitive test for the detection of recent and potentially dangerous faecal pollution Provides a hygienic assessment of water quality with high sensitivity and specificity It is important to examine water sources frequently by simple tests rather than infrequently by more complicated test or series of tests
  • 7. Indicator Organisms Investigation for individual specific pathogens is rarely practical since they are fewer in numbers than the non-pathogenic organisms and their detection methods are too demanding.  Therefore, indicators of human/animal pollution e.g. coliforms are used to access water quality.
  • 8. Indicators E. coli Faecal Coliforms Total Coliforms Faecal Streptococci
  • 9. Indicator Organisms Cont’d Escherichia coli •Found in human and animal faeces; in sewage, treated effluents, and natural waters subjected to faecal contamination •Up to 109 per gram in fresh faeces. •Routine identification is complex, but tests are available for rapid reliable identification. Faecal coliforms •Genus Escherichia and some spp of Klebsiella, Enterobacter and Citrobacter •May originate from organically enriched water or from decaying matter. •Rarely regrow in the distribution system
  • 10. Indicator Organisms Cont’d Total Coliforms •Gram-ve, bacilli tolerant to bile salts. •Not necessarily faecal bacteria. •Should not be detected in treated water and, if found, suggest inadequate treatment, post treatment contamination, or excessive nutrients. • Test used as an indicator both of treatment efficiency and of the integrity of the distribution system. Faecal streptococci • Present in the faeces human and animal faeces. •Belong to the genera Enterococcus and Streptococcus •Most spp are of faecal origin and indicate faecal contamination. •Rarely multiply in polluted water, and are more persistent than the coliforms. •Indicators of treatment efficiency.
  • 11. Sampling Sampling from a tap or pump outlet  Remove any attachments from tap that may cause splashing.  Wipe off the dirt from outside the tap.  Turn on the tap at maximum flow rate and let the water flow for 1-2 minutes.  Sterilize it for a minute with flame using gas burner, lighter or ignited cotton wool soaked in spirit.  Open the tap and allow water to flow at medium rate for 1-2 minutes.  Open the container for collecting the sample and fill the water by holding the bottle under the water jet. Leave a small airspace to facilitate shaking at thetime of inoculation prior to analysis.  Stopper the cap and label the container. Sampling from reservoir  Submerge the bottle in the water.  Open the bottle inside of the water.  Fill it by holding it by the lower part, submerging it to a depth of about 30 centimetres, with the mouth facing slightly upwards. If there is a current, the bottle should face the current.  Pull it out when the bottle is filled.  Discard a little water to provide airspace  Stopper the bottle and label it.
  • 12. Methods for Microbial Analysis Microbial Analysis Membrane filtration method Multiple-tube method
  • 13. Sampling cont’d Sampling from a dug well  Attach a stone of suitable size to the sampling bottle with a piece of string.  Tie a 20 meter length of clean string on the bottle and to a stick.  Open the bottle as described above and lower into the well.  Immerse the bottle completely in water without touching the sides of the well and lower it down to the bottom of the well.  Pull it out when the bottle is filled.  6. Discard a little water to provide airspace.  7. Stopper and label the bottle.
  • 14. Membrane Filtration Method Aseptically introduce sample into sterile membrane filter assembly ( 0.2 or 0.45 μm) Filter retains indicator organisms Transfer to a suitable culture medium and incubate Count colonies and report results in CFU /100 ml
  • 16. Multiple-tube method Add different measured sample volumes of to tubes containing a suitable culture medium Organisms reproduce and produce acid with or without gas Statistically determine MPN of organisms in the original sample
  • 17. Principle  Separate analyses are usually conducted on five portions of each of three serial dilutions of a water sample.  The individual portions are used to inoculate tubes of culture medium that are then incubated at a standard temperature for a standard period of time.  The presence of coliforms is indicated by turbidity in the culture medium, by a pH change and/or by the presence of gas.  The MPN index is determined by comparing the pattern of positive results (the number of tubes showing growth at each dilution) with statistical tables.  The tabulated value is reported as MPN per 100 ml of sample.
  • 18. Culture media Medium uses Incubation periods Lactose broth Total or thermotolerant Isolation media Double strength broth: Dissolve 71.2 g of lauryl sulphate broth in 1 litre distilled water.  After solubilisation, dispense 10 ml into each test tube containing inverted Durhan-tubes.  Sterilise by autoclaving at 121°C for 15 minutes. Cool down slowly to prevent bubbles in Durhan-tubes. Single strength broth: Dissolve 35.6 g of lauryl sulphate broth in 1 litre distilled water.  After solubilisation, dispense 10 ml into each test tube containing inverted Durhan-tubes.  Sterilise by autoclaving at 121°C for 15 minutes. Cool down slowly to prevent bubbles in Durhan-tubes. coliforms 48 hours at 35 ± 0.5 °C or 37 ± 0.5 °C for total coliforms and 24 hours at 44 ± 0.25 °C or 44.5 ± 0.25 °C for thermotolerant coliforms MacConkey Broth & Lauryl tryptose (lactose) broth Total or thermotolerant coliforms 48 hours at 35 ± 0.5 °C or 37 ± 0.5 °C for total coliforms and 24 hours at 44 ± 0.25 °C or 44.5 ± 0.25 °C for thermotolerant coliforms
  • 19.  Prepare the required number of tubes of culture medium. The volume and strength (single or double) of medium in the tubes will vary depending on the expected bacteriological density in the water and the dilution series planned.  Select and prepare a range of sample dilutions  Pipette the appropriate volumes of sample and diluted sample into the tubes of medium  Label the tubes with the sample reference number, the dilution and the volume of sample (or dilution) added to the tube.  Shake gently to mix the sample with the medium. Place the rack in an incubator or water-bath for 48 hours at 35 ± 0.5 ºC or 37 ± 0.5 ºC.
  • 20. Procedure cont’d  After 18 or 24 hours, note which tubes show growth.  Tubes that show turbidity and gas production, or a colour change indicating the production of acid (if the medium contains a pH indicator), are regarded as positive  Return the tubes to the incubator and re-examine after a total of 48 hours of incubation. Continue with the next step of the procedure. Confirmatory test  Prepare the required number of tubes of confirmation culture medium (BGLB broth for total coliforms and E. coli medium for faecal coliforms).  Using a sterile wire loop, transfer inocula from positive tubes into the confirmation medium  Incubate them for 48 hours at 35 ± 0.5 °C or 37 ± 0.5 °C for total coliforms (BGLB broth) or for 24 hours at 44 ± 0.5 °C for faecal coliforms (E. coli medium)
  • 21. Procedure cont’d  After the prescribed incubation time, note which tubes show growth with the production of gas, and record the number of positives for each sample dilution  The test organism is cultured in a medium which contains tryptophane, kovac’s reagent added to confirm indole production  Compare the pattern of positive results with a most probable number table such as one of those given in Tables
  • 22. Typical sample volumes and number of tubes for multiple fermentation tube analysis Sample 50ml 10ml 1ml 0.1 0.01ml Treated drinking-water 1 1 5 Partially treated drinking water 5 5 5 Recreational water 5 5 5 Protected source water 5 5 5
  • 23. Membrane Filtration... Method involves comparatively simpler procedures. Technique is inappropriate for highly turbid waters. Filters may be expensive in some countries.
  • 24. MPN statistical table Combination of positive MPN index /100ml 95% confidence level Upper lower 0 0 0 < 2 - - 0 0 1 2 1 10 1 1 0 4 1 15 2 1 0 7 2 20
  • 25. Multiple-tube method... Method is applicable to all kinds of water: clear, coloured, or turbid containing sewage, sludge, mud or soil particles, provided the contaminants in the prepared test samples are homogeneously Distributed. Method is comparatively complex.
  • 26. Water Quality Standards Regulations on the purity of water used for various purposes. Mandatory limits concerning constituents and contaminants of water known to be hazardous and/or cause inconveniencies. Sets of procedures and practices required to meet the mandatory limits.
  • 27. Water Quality Standards Water Quality Standards Surface Water Quality Standards Drinking Water Quality Standards
  • 28. Water Quality Parameters Physical properties Chemical / Inorganic Substances Organic Constituents Disinfectants and their by-products Radionuclides Microbiological Parameters.
  • 29. ISO Drinking Water Quality Standard
  • 30. Quality Standards of Water( Summary) Physical parameter Fresh water Communal water Trout water High quality water Turbidity 50/25 NTU 10 NTU < 10 NTU Temperature RT RT RT RT Hardness 100mg/l cacO3 Chemical parameter Fresh water Communal water Trout water High quality water pH 6-9 6.8-8.5 7 Salinity N N N N Chlorine 230mg/l 250mg/l N Alluminum 87ug/l 6500ug/l Dessolved Not less than Not less than oxygen 5.mg/l 6mg/l Not less than 6mg/l
  • 31. Quality Standards of Water cont’d Bacteriological Fresh water Communal water High quality parameter water Enterococcus 35org. /100ml Feacal coliforms 200org. /100ml Key: NTU- Neplelometric Tubidity Unit RT- Room Temperature N- Normal Refer to Table 1. Microbial Examination of Water and Water Quality Standards (group 2) for more detail