This document provides information about the National Institutes of Health (NIH) public access policy. It discusses who must comply with the policy, when manuscripts must be submitted, and the different options for submitting manuscripts to PubMed Central, including having publishers deposit articles or submitting them directly through the NIH Manuscript Submission system. The document also reviews how to cite articles that are available in PubMed Central and where to direct additional questions.
Computer Session #1: Asking and Acquiring InformationOpen.Michigan
Slideshow is from the University of Michigan Medical School's M1 Patients and Populations: Medical Decision-Making Sequence.
View additional course materials on Open.Michigan:
openmi.ch/med-M1PatientsPopulations
How many medline platforms on the web?Basset Hervé
The document discusses various biomedical literature search platforms and alternatives to PubMed/Medline. It summarizes PubMed/Medline's history and features. It then evaluates PubMed as both a success and tragedy due to its poor interface but large userbase. Several alternative search platforms like GoPubMed, Quertle and BibliMed are introduced as having better search experiences and interfaces than PubMed/Medline. The document recommends using alternative platforms for more efficient searching, accessing full texts and identifying experts.
Twitter Adoption and Use in Mass Convergence and Emergency Eventsguest8c177f
This presentation offers a descriptive account of Twitter (a micro-blogging service) across four high profile, mass convergence events—two emergency and two national security. We statistically examine how Twitter is being used surrounding these events, and compare and contrast how that behavior is different from more general Twitter use. Our findings suggest that Twitter messages sent during these types of events contain more displays of information broadcasting and brokerage, and we observe that general Twitter use seems to have evolved over time to offer more of an information-sharing purpose. We also provide preliminary evidence that Twitter users who join during and in apparent relation to a mass convergence or emergency event are more likely to become long-term adopters of the technology.
The document discusses a student's search of library databases on the topic of stem cell research for a class project. The student searched the CINAHL database using the terms "stem cell research" and then narrowed the search by adding "and the government". This reduced the results from 493 to 80 articles. The student explored two articles in depth, one which was available as a full text PDF and another which required accessing through another database. The search helped the student focus their topic for a brochure on stem cell research and the relationship with government. The student identifies the National Institutes of Health and Mayo Clinic websites as potential resources for the project.
The document discusses research methods and tools for managing references and citations. It addresses what research is, how to evaluate source credibility, and topics in energy research such as chemistry, geology, and physics. It also introduces reference management tools Refworks, Zotero, and Mendeley that allow users to organize references and citations and insert them into documents. Specific instructions are provided on creating a Refworks account using the group code RWSUNYBinghamton.
The document discusses third-party tools that provide alternative interfaces for searching PubMed. It begins with a brief history of access to MEDLINE and the development of PubMed and its APIs. The bulk of the document describes several case studies of third-party tools, grouping them according to themes like semantic searching, visualization, mobile access, and simplification. It concludes with exercises for groups to explore different tools in more depth and discussion questions about adopting ideas from third parties or circumstances for using various tools.
Computer Session #1: Asking and Acquiring InformationOpen.Michigan
Slideshow is from the University of Michigan Medical School's M1 Patients and Populations: Medical Decision-Making Sequence.
View additional course materials on Open.Michigan:
openmi.ch/med-M1PatientsPopulations
How many medline platforms on the web?Basset Hervé
The document discusses various biomedical literature search platforms and alternatives to PubMed/Medline. It summarizes PubMed/Medline's history and features. It then evaluates PubMed as both a success and tragedy due to its poor interface but large userbase. Several alternative search platforms like GoPubMed, Quertle and BibliMed are introduced as having better search experiences and interfaces than PubMed/Medline. The document recommends using alternative platforms for more efficient searching, accessing full texts and identifying experts.
Twitter Adoption and Use in Mass Convergence and Emergency Eventsguest8c177f
This presentation offers a descriptive account of Twitter (a micro-blogging service) across four high profile, mass convergence events—two emergency and two national security. We statistically examine how Twitter is being used surrounding these events, and compare and contrast how that behavior is different from more general Twitter use. Our findings suggest that Twitter messages sent during these types of events contain more displays of information broadcasting and brokerage, and we observe that general Twitter use seems to have evolved over time to offer more of an information-sharing purpose. We also provide preliminary evidence that Twitter users who join during and in apparent relation to a mass convergence or emergency event are more likely to become long-term adopters of the technology.
The document discusses a student's search of library databases on the topic of stem cell research for a class project. The student searched the CINAHL database using the terms "stem cell research" and then narrowed the search by adding "and the government". This reduced the results from 493 to 80 articles. The student explored two articles in depth, one which was available as a full text PDF and another which required accessing through another database. The search helped the student focus their topic for a brochure on stem cell research and the relationship with government. The student identifies the National Institutes of Health and Mayo Clinic websites as potential resources for the project.
The document discusses research methods and tools for managing references and citations. It addresses what research is, how to evaluate source credibility, and topics in energy research such as chemistry, geology, and physics. It also introduces reference management tools Refworks, Zotero, and Mendeley that allow users to organize references and citations and insert them into documents. Specific instructions are provided on creating a Refworks account using the group code RWSUNYBinghamton.
The document discusses third-party tools that provide alternative interfaces for searching PubMed. It begins with a brief history of access to MEDLINE and the development of PubMed and its APIs. The bulk of the document describes several case studies of third-party tools, grouping them according to themes like semantic searching, visualization, mobile access, and simplification. It concludes with exercises for groups to explore different tools in more depth and discussion questions about adopting ideas from third parties or circumstances for using various tools.
Government Sources for Scientific Informationjmburroughs
The document provides a list of government websites that are sources for scientific information on various topics including energy, the environment, health, and forestry. It includes the URLs and brief descriptions of websites run by agencies like the Department of Energy, Environmental Protection Agency, US Geological Survey, National Institutes of Health, and US Forest Service that provide data, reports, and other resources for research. It also lists some kid-friendly science websites hosted by the government.
The document provides information about energy research and consumption in the United States. It states that in 2011, the United States consumed around 97 quadrillion BTUs of energy, with around 11% coming from non-fossil fuel sources such as nuclear, hydroelectric, and renewable energy. The document also lists several databases and tools that can be used for research in chemistry, including ScienceDirect, Scifinder Scholar, Web of Science, Wikipedia Chemistry Portal, Chemspider, and Google Scholar. It provides information on using reference management tools like RefWorks, Zotero, and Mendeley to organize references and citations.
Citations needed for the sum of all human knowledge: Wikidata as the missing ...Dario Taraborelli
This document discusses Wikidata and WikiCite's role as central hubs for open knowledge and citations. It notes that Wikidata is a free knowledge base with over 20 million items and 100 million statements that is edited by volunteers. WikiCite aims to build a repository of citations from Wikimedia projects to improve coverage, quality and machine-readability of citations. Examples are given of using Wikidata and SPARQL to query biomedical information and citations. Challenges and opportunities are discussed around expert curation, open data, and accelerating impact of open access.
This document summarizes recent developments in copyright law and how they affect libraries. It discusses several major court cases involving issues like fair use, licensing, and the Google Books and Hathitrust projects. Recent litigation has centered around determining what constitutes fair use in regards to e-reserves and streaming content. Publishers are bringing more lawsuits to gain greater control over content licensing and distribution in the digital age. The document provides updates on copyright term changes and exceptions like fair use that are important for libraries.
This presentation was provided by Bruce Rosenblum of Atypon, during the NISO hot topic event "Preprints." The virtual conference was held on April 21, 2021.
This document presents an approach to infer resource needs from tweets during crisis situations using a domain ontology. It filters tweets by location and identifies needs related to power, medical care, food, and water. Text-based location detection identified locations for 66% of tweets within the affected region, compared to 43% for metadata-based detection. The approach uses DBpedia's ontology to precisely detect locations mentioned in text. This information could help coordinate response by identifying critical resource needs and their locations.
The document discusses the importance of math skills and provides strategies for studying math effectively. It notes that by 8th grade, U.S. students are two years behind peers in other countries in math topics. Nearly every career utilizes math in some way. The document then describes seven different learning styles ("smarts") and provides study strategies tailored to each style, such as singing songs about formulas for musical smarts or drawing pictures for spatial smarts. It encourages trying different strategies to determine the most effective approach.
Nitrogen is essential for plant growth and comes from several sources. Atmospheric nitrogen makes up 78% of the air we breathe but needs to be converted before plants can use it. Biological nitrogen fixation by bacteria accounts for 30-70% of converted nitrogen, with symbiotic bacteria living in legume plant roots. Industrial nitrogen sources include anhydrous ammonia, urea, ammonium sulfate, and others. The nitrogen cycle involves nitrogen being applied and converted between gas, ammonium, and nitrate forms as it moves through the soil, plants, and atmosphere. Slow and controlled-release fertilizers like ESN and SuperU help reduce nitrogen losses compared to products like urea.
This document discusses the use of rubrics in Blackboard, Turnitin, and Excel for electronic management of assessment at Glasgow Caledonian University. Rubrics provide a scoring system to evaluate student work transparently. Excel can be used to create electronic marking grids and check rubric accuracy, while Blackboard offers basic integrated rubrics. However, Turnitin has additional rubric features that make it a clearer choice as part of the university's electronic management of assessment package. The document explores examples of rubrics in the different systems and provides contact information for questions.
The document appears to be asking if someone can complete a pretest for Chapter 1 now. It provides no other context or details about the subject matter of the pretest. The short document simply references a "Chapter 1 Pretest" without any other identifying information.
The document provides an introduction to decimal notation and discusses:
- Different numbering systems used by various cultures including Roman, Greek, Chinese, and Hindu-Arabic numerals.
- The development of the decimal system we use today, which started with the Mayans in 300 BC and took its current form with 10 digits (0-9) in 1522 AD.
- Key aspects of decimal notation including writing whole numbers with 1, 2, or 3 digits, and identifying the value of digits based on their place within a number.
- Examples of converting between decimal notation and writing out numbers in English.
Section 4 write equations and inequalitiesjslloyd23
- Gerry borrowed $2000 at a 4% simple interest rate and plans to pay it back in 2 years. To calculate the interest owed, take the principal ($2000) times the interest rate (4%) times the time (2 years).
- A whale is traveling at an average speed of 5.4 km/hr. To calculate the distance traveled in 18 hours, take the speed (5.4 km/hr) times the time (18 hours).
- Skye sells baskets for a profit of $68 each after $2.50 in expenses per basket. To calculate the price for 3 baskets, take the profit per basket ($68) plus the expenses per basket ($2.50)
The document describes various actions using different verb tenses, including the simple past, simple present, and present continuous. The simple past is used to describe completed actions in the past, the simple present describes habitual or general truths, and the present continuous describes ongoing actions happening now. A variety of everyday activities are mentioned such as eating, drinking, writing, playing, teaching, and more to illustrate the different verb tenses.
NIH Public Access Policy at UCLA - Fall 2012lmfederer
Presented at UCLA Library on October 23, 2012 as part of Open Access Week 2012. Discusses NIH Public Access Policy and how to comply, with a focus on resources available at UCLA.
- The document discusses the NIH public access policy which mandates that researchers who receive NIH funding must submit final peer-reviewed manuscripts to PubMed Central within 12 months of publication.
- It provides details on who it applies to, what types of publications it applies to, the submission process, and resources for complying with the policy.
- Non-compliance can delay or prevent awarding of future NIH funds but does not impact the scientific merit of grant applications. Researchers must include PubMed Central identification numbers in reports and applications.
The document discusses the key elements and requirements for complying with the NIH Public Access Policy, which requires investigators funded by NIH to submit final peer-reviewed manuscripts to PubMed Central upon acceptance for publication. The three main elements are: 1) retaining author rights to submit to PMC, 2) submitting the manuscript to PMC or NIH's manuscript submission system, and 3) providing proof of compliance on grant applications. The PI is ultimately responsible for approving manuscript submissions, though an author other than the PI may submit.
NIH Public Access Policy - Neil Thakur (2007)faflrt
Dr. Neil Thakur, point person for the NIH Public Access policy shared the NIH perspective in the Open Access debate and their progress to date. Sponsored by ALA Federal and Armed Forces Libraries Roundtable (FAFLRT). Presented on June 25, 2007 at ALA Annual Conference in Washington, DC.
The National Institutes of Health (NIH) requires researchers receiving NIH funding to submit the final peer-reviewed manuscripts of journal articles to PubMed Central upon acceptance for publication. This policy aims to provide public access to publicly funded research and advance science. It applies to all research funded by the NIH after April 7, 2008. Researchers and their institutions are responsible for ensuring compliance with this policy.
1. The NIH Public Access Policy requires that investigators funded by NIH submit the final peer-reviewed manuscript from any NIH-funded research to PubMed Central upon acceptance for publication.
2. To comply, investigators should retain the right to deposit manuscripts in PubMed Central in their publication agreements. Manuscripts can be deposited directly or publishers may deposit on behalf of investigators.
3. The PMCID (PubMed Central identification number) from deposited manuscripts must be cited in all communications with NIH, such as grant applications and progress reports.
The document discusses the NIH public access policy, which requires researchers receiving NIH funding to submit final peer-reviewed manuscripts to PubMed Central. It outlines the policy requirements, explains the four methods of compliance, and provides tips on how to locate PMCID numbers, configure EndNote, and get help from the library to ensure compliance. Potential issues like determining the appropriate manuscript version and locating NIHMS IDs are also addressed.
Public Access Short Presentation Ucsf ModifyMarcus Banks
The document provides an overview of the NIH Public Access Policy, which requires researchers receiving NIH funding to submit final peer-reviewed manuscripts to PubMed Central upon acceptance for publication. It discusses the goals of increasing access to taxpayer-funded research and complying with copyright law. It also outlines requirements for compliance, such as submitting manuscripts to NIHMS or including PMCIDs in citations when referring to applicable articles.
The document provides an overview of the National Institutes of Health (NIH) Public Access Policy, which requires researchers receiving NIH funding to submit final peer-reviewed manuscripts to PubMed Central within 12 months of publication. It discusses compliance with the policy and outlines the process for submitting articles to PubMed Central or PubMed, including determining applicability and addressing copyright. Guidelines for including PMCIDs or NIHMSIDs in citations for NIH applications and reports are also covered.
Government Sources for Scientific Informationjmburroughs
The document provides a list of government websites that are sources for scientific information on various topics including energy, the environment, health, and forestry. It includes the URLs and brief descriptions of websites run by agencies like the Department of Energy, Environmental Protection Agency, US Geological Survey, National Institutes of Health, and US Forest Service that provide data, reports, and other resources for research. It also lists some kid-friendly science websites hosted by the government.
The document provides information about energy research and consumption in the United States. It states that in 2011, the United States consumed around 97 quadrillion BTUs of energy, with around 11% coming from non-fossil fuel sources such as nuclear, hydroelectric, and renewable energy. The document also lists several databases and tools that can be used for research in chemistry, including ScienceDirect, Scifinder Scholar, Web of Science, Wikipedia Chemistry Portal, Chemspider, and Google Scholar. It provides information on using reference management tools like RefWorks, Zotero, and Mendeley to organize references and citations.
Citations needed for the sum of all human knowledge: Wikidata as the missing ...Dario Taraborelli
This document discusses Wikidata and WikiCite's role as central hubs for open knowledge and citations. It notes that Wikidata is a free knowledge base with over 20 million items and 100 million statements that is edited by volunteers. WikiCite aims to build a repository of citations from Wikimedia projects to improve coverage, quality and machine-readability of citations. Examples are given of using Wikidata and SPARQL to query biomedical information and citations. Challenges and opportunities are discussed around expert curation, open data, and accelerating impact of open access.
This document summarizes recent developments in copyright law and how they affect libraries. It discusses several major court cases involving issues like fair use, licensing, and the Google Books and Hathitrust projects. Recent litigation has centered around determining what constitutes fair use in regards to e-reserves and streaming content. Publishers are bringing more lawsuits to gain greater control over content licensing and distribution in the digital age. The document provides updates on copyright term changes and exceptions like fair use that are important for libraries.
This presentation was provided by Bruce Rosenblum of Atypon, during the NISO hot topic event "Preprints." The virtual conference was held on April 21, 2021.
This document presents an approach to infer resource needs from tweets during crisis situations using a domain ontology. It filters tweets by location and identifies needs related to power, medical care, food, and water. Text-based location detection identified locations for 66% of tweets within the affected region, compared to 43% for metadata-based detection. The approach uses DBpedia's ontology to precisely detect locations mentioned in text. This information could help coordinate response by identifying critical resource needs and their locations.
The document discusses the importance of math skills and provides strategies for studying math effectively. It notes that by 8th grade, U.S. students are two years behind peers in other countries in math topics. Nearly every career utilizes math in some way. The document then describes seven different learning styles ("smarts") and provides study strategies tailored to each style, such as singing songs about formulas for musical smarts or drawing pictures for spatial smarts. It encourages trying different strategies to determine the most effective approach.
Nitrogen is essential for plant growth and comes from several sources. Atmospheric nitrogen makes up 78% of the air we breathe but needs to be converted before plants can use it. Biological nitrogen fixation by bacteria accounts for 30-70% of converted nitrogen, with symbiotic bacteria living in legume plant roots. Industrial nitrogen sources include anhydrous ammonia, urea, ammonium sulfate, and others. The nitrogen cycle involves nitrogen being applied and converted between gas, ammonium, and nitrate forms as it moves through the soil, plants, and atmosphere. Slow and controlled-release fertilizers like ESN and SuperU help reduce nitrogen losses compared to products like urea.
This document discusses the use of rubrics in Blackboard, Turnitin, and Excel for electronic management of assessment at Glasgow Caledonian University. Rubrics provide a scoring system to evaluate student work transparently. Excel can be used to create electronic marking grids and check rubric accuracy, while Blackboard offers basic integrated rubrics. However, Turnitin has additional rubric features that make it a clearer choice as part of the university's electronic management of assessment package. The document explores examples of rubrics in the different systems and provides contact information for questions.
The document appears to be asking if someone can complete a pretest for Chapter 1 now. It provides no other context or details about the subject matter of the pretest. The short document simply references a "Chapter 1 Pretest" without any other identifying information.
The document provides an introduction to decimal notation and discusses:
- Different numbering systems used by various cultures including Roman, Greek, Chinese, and Hindu-Arabic numerals.
- The development of the decimal system we use today, which started with the Mayans in 300 BC and took its current form with 10 digits (0-9) in 1522 AD.
- Key aspects of decimal notation including writing whole numbers with 1, 2, or 3 digits, and identifying the value of digits based on their place within a number.
- Examples of converting between decimal notation and writing out numbers in English.
Section 4 write equations and inequalitiesjslloyd23
- Gerry borrowed $2000 at a 4% simple interest rate and plans to pay it back in 2 years. To calculate the interest owed, take the principal ($2000) times the interest rate (4%) times the time (2 years).
- A whale is traveling at an average speed of 5.4 km/hr. To calculate the distance traveled in 18 hours, take the speed (5.4 km/hr) times the time (18 hours).
- Skye sells baskets for a profit of $68 each after $2.50 in expenses per basket. To calculate the price for 3 baskets, take the profit per basket ($68) plus the expenses per basket ($2.50)
The document describes various actions using different verb tenses, including the simple past, simple present, and present continuous. The simple past is used to describe completed actions in the past, the simple present describes habitual or general truths, and the present continuous describes ongoing actions happening now. A variety of everyday activities are mentioned such as eating, drinking, writing, playing, teaching, and more to illustrate the different verb tenses.
NIH Public Access Policy at UCLA - Fall 2012lmfederer
Presented at UCLA Library on October 23, 2012 as part of Open Access Week 2012. Discusses NIH Public Access Policy and how to comply, with a focus on resources available at UCLA.
- The document discusses the NIH public access policy which mandates that researchers who receive NIH funding must submit final peer-reviewed manuscripts to PubMed Central within 12 months of publication.
- It provides details on who it applies to, what types of publications it applies to, the submission process, and resources for complying with the policy.
- Non-compliance can delay or prevent awarding of future NIH funds but does not impact the scientific merit of grant applications. Researchers must include PubMed Central identification numbers in reports and applications.
The document discusses the key elements and requirements for complying with the NIH Public Access Policy, which requires investigators funded by NIH to submit final peer-reviewed manuscripts to PubMed Central upon acceptance for publication. The three main elements are: 1) retaining author rights to submit to PMC, 2) submitting the manuscript to PMC or NIH's manuscript submission system, and 3) providing proof of compliance on grant applications. The PI is ultimately responsible for approving manuscript submissions, though an author other than the PI may submit.
NIH Public Access Policy - Neil Thakur (2007)faflrt
Dr. Neil Thakur, point person for the NIH Public Access policy shared the NIH perspective in the Open Access debate and their progress to date. Sponsored by ALA Federal and Armed Forces Libraries Roundtable (FAFLRT). Presented on June 25, 2007 at ALA Annual Conference in Washington, DC.
The National Institutes of Health (NIH) requires researchers receiving NIH funding to submit the final peer-reviewed manuscripts of journal articles to PubMed Central upon acceptance for publication. This policy aims to provide public access to publicly funded research and advance science. It applies to all research funded by the NIH after April 7, 2008. Researchers and their institutions are responsible for ensuring compliance with this policy.
1. The NIH Public Access Policy requires that investigators funded by NIH submit the final peer-reviewed manuscript from any NIH-funded research to PubMed Central upon acceptance for publication.
2. To comply, investigators should retain the right to deposit manuscripts in PubMed Central in their publication agreements. Manuscripts can be deposited directly or publishers may deposit on behalf of investigators.
3. The PMCID (PubMed Central identification number) from deposited manuscripts must be cited in all communications with NIH, such as grant applications and progress reports.
The document discusses the NIH public access policy, which requires researchers receiving NIH funding to submit final peer-reviewed manuscripts to PubMed Central. It outlines the policy requirements, explains the four methods of compliance, and provides tips on how to locate PMCID numbers, configure EndNote, and get help from the library to ensure compliance. Potential issues like determining the appropriate manuscript version and locating NIHMS IDs are also addressed.
Public Access Short Presentation Ucsf ModifyMarcus Banks
The document provides an overview of the NIH Public Access Policy, which requires researchers receiving NIH funding to submit final peer-reviewed manuscripts to PubMed Central upon acceptance for publication. It discusses the goals of increasing access to taxpayer-funded research and complying with copyright law. It also outlines requirements for compliance, such as submitting manuscripts to NIHMS or including PMCIDs in citations when referring to applicable articles.
The document provides an overview of the National Institutes of Health (NIH) Public Access Policy, which requires researchers receiving NIH funding to submit final peer-reviewed manuscripts to PubMed Central within 12 months of publication. It discusses compliance with the policy and outlines the process for submitting articles to PubMed Central or PubMed, including determining applicability and addressing copyright. Guidelines for including PMCIDs or NIHMSIDs in citations for NIH applications and reports are also covered.
Oregon State University and NIH Open Access Policies (2014)mboock
This document discusses Oregon State University's open access policy and how to comply with the National Institutes of Health public access policy. It provides an overview of green and gold open access. It describes the key points and requirements of OSU's open access policy, including depositing articles in the institutional repository. It also outlines the NIH policy's goals and requirements for depositing peer-reviewed articles from NIH-funded research in PubMed Central within 12 months of publication. Finally, it discusses the different methods for complying with the NIH policy, including publishing in certain journals, arranging publisher deposit, or depositing manuscripts directly through the NIH system.
NIH Public Access Policy: After You Publishlynnkysh
This document provides information on tracking compliance with the NIH Public Access Policy after publication. It discusses using eRA Commons and NIH RePORTER to find grant information and publications. It also covers locating author agreements to ensure they allow submission to PubMed Central and examples of publisher policies, including straightforward language from Elsevier and less clear language from the American Journal of Public Health. Finally, it lists additional resources on the NIH Public Access Policy.
The document summarizes key points about open access publishing options for scholarly articles, including open access journals, NIH public access policy, self-archiving in "green" journals, and their potential impact on increasing citations. Open access provides digital, online, and free access to articles while removing barriers of price and permission. Studies show open access articles tend to be cited more frequently than non-open access articles, though the reasons for this are still being explored.
The document discusses the National Institutes of Health (NIH) Public Access Policy, which mandates that investigators funded by NIH submit final peer-reviewed manuscripts to PubMed Central upon acceptance for publication, to be made publicly available no later than 12 months after official publication date. It provides details on policy requirements, author responsibilities, and submission procedures to comply with the policy.
This document outlines a search of library databases and websites on the topic of hospital-acquired infections. A search of the internet using Google produced over 8.7 million results for "hospital-acquired infections" and narrowed results to 475,000 when searched with quotation marks. Credible websites like the CDC were evaluated. Database searches in CINAHL and Business Source Complete using advanced search techniques found relevant peer-reviewed articles on reducing infections through hand washing and estimating infection incidence and burden. Appendices provide screenshots of search results.
The document discusses the NIH Public Access Policy, which requires that peer-reviewed articles resulting from NIH funding be made publicly available through PubMed Central. It explains what a PMCID is, who the policy applies to, and why researchers need to comply. It provides details on the different methods for getting a PMCID and setting up citation management tools like RefWorks to properly cite articles with PMCIDs or NIHMSIDs. Noncompliance could impact future NIH funding.
The document summarizes the NIH Public Access Policy, which requires researchers who receive NIH funding to submit final peer-reviewed manuscripts to PubMed Central. It discusses how the policy benefits researchers, patients, and the public. It also outlines how libraries can help by advising authors on copyright issues, assisting with publisher agreements, and coordinating compliance efforts. The library's role is presented as helping relieve burdens on researchers while supporting open access to the biomedical literature.
This document discusses the NIH Public Access Policy and how to comply using My NCBI and the RPPR. It provides an overview of the policy, how to associate publications with grants in My NCBI and the RPPR, and assistance available for MD Anderson faculty and staff. Key steps include addressing copyright, depositing papers in PubMed Central, adding citations to My Bibliography, and associating publications with grants in reporting. The Research Medical Library can help with depositing papers and understanding the policy's requirements.
The document discusses the National Institutes of Health's (NIH) new policy requiring open access to research publications resulting from NIH-funded research. Key points:
1) The NIH policy aims to make taxpayer-funded research openly accessible to the public without barriers. It will apply to a major portion of biomedical literature.
2) Open access publishing is growing, with successful models like BioMed Central and the Public Library of Science providing immediate access. This benefits researchers through easier dissemination and citation of articles.
3) While some traditional publishers oppose open access, alternatives like open access journals are gaining momentum as major science funders support publishing costs. The NIH estimates it already pays over $30 million annually towards publishing
1. Kate Krause, MLIS
Institutional Repository Coordinator
The Texas Medical Center Library
Laurissa Gann, MSLS
Outreach Librarian
Research Medical Library, UT MD Anderson Cancer Center
March, 2011
2. Kate Krause, MLIS Laurissa Gann, MSLS
Institutional Repository Coordinator Outreach Librarian
The Texas Medical Center Library Research Medical Library,
kathryn.krause@exch.library.tmc.edu UT MD Anderson Cancer Center
lgann@mdanderson.org
http://publicaccess.nih.gov/
3. 1. Overview of the Policy
2. Who Has to Comply?
3. When do you Have to Comply?
4. How to Secure the Required Copyright
5. How to Submit your Article
6. How to Cite your Article
7. How to Cite with EndNote
8. More Information Sources
9. Questions and Answers
http://publicaccess.nih.gov/
7. PubMed Central (PMC):
Online database of full-text, peer-
reviewed journal articles
PubMed:
Online database of citations of articles in
biomedical literature
http://publicaccess.nih.gov/
15. “Journal acknowledges that Author retains the right to provide a copy
of the final peer-reviewed manuscript to the NIH upon acceptance for
Journal publication, for public archiving in PubMed Central as soon
as possible but no later than 12 months after publication by Journal.”
http://publicaccess.nih.gov/
16. Your agreement with the publisher should also
stipulate:
Which submission method will be used
Which version of the document will be
uploaded to PMC: the manuscript or the
article
Who will submit the document
When will it be submitted
Who will approve the submission
When it will be made public on PMC
http://publicaccess.nih.gov/
18. If you’d like to see how other institutions do
it, some have made their contract language
and cover letters public:
Penn State College of Medicine "Penn St.
Copyright Addendum"
Yale University "PubMed Cover
Letter, Addendum, and Instructions"
Stanford School of Medicine "Stanford
Copyright Addendum“
Norris Medical Library
Washington University
http://publicaccess.nih.gov/
19. AMENDMENT TO PUBLICATION AGREEMENT
THIS Amendment, effective as of the last date of signature hereon, modifies the attached Publication Agreement concerning the
following Article:
______________________________________________________________________________
(Manuscript title)
______________________________________________________________________________
(Journal name)
The parties to the Publication Agreement and to this Amendment are:
______________________________________________________________________________
(“Author”),
and
______________________________________________________________________________
(“Publisher”).
1. The parties agree that wherever there is any conflict between this Amendment and the
Publication Agreement, the provisions of this Amendment are paramount and the Publication
Agreement shall be construed accordingly.
2. Notwithstanding any terms in the Publication Agreement to the contrary and in addition to the
rights retained by Author or licensed by Publisher to Author in the Publication Agreement and
any fair use rights of Author, Author and Publisher agree that the Author shall also retain the
following rights:
"Journal acknowledges that Author retains the right to provide a copy of the final
manuscript to the NIH upon acceptance for Journal publication, for public archiving in
PubMed Central as soon as possible but no later than 12 months after publication by
Journal."
3. Final Agreement. This Amendment and the Publication Agreement, taken together, constitute
the final agreement between the Author and the Publisher with respect to the publication of
the Article and allocation of rights under copyright in the Article. Any modification of or
additions to the terms of this Amendment or to the Publication Agreement must be in writing
and executed by both Publisher and Author in order to be effective.
AUTHOR PUBLISHER
____________________________ ______________________________
____________________________ ______________________________
Date Date
http://publicaccess.nih.gov/
23. a. Publish in a journal that deposits all final
published articles in PubMed Central (PMC)
without author involvement
b. Make arrangements to have the publisher
deposit a specific final published article in
PubMed Central
http://publicaccess.nih.gov/
24. a. Publish in a journal that deposits all final
published articles in PubMed Central (PMC)
without author involvement
b. Make arrangements to have the publisher
deposit a specific final published article in
PubMed Central
c. Deposit peer-reviewed manuscripts via NIH
Manuscript Submission (NIHMS) system
http://publicaccess.nih.gov/
30. a. Publish in a journal that deposits all final
published articles in PubMed Central (PMC)
without author involvement
b. Make arrangements to have the publisher
deposit a specific final published article in
PubMed Central
c. Deposit peer-reviewed manuscripts via NIH
Manuscript Submission (NIHMS) system
d. Complete the submission process for a final
peer-reviewed manuscript that the publisher
has deposited in NIHMS
http://publicaccess.nih.gov/
35. Doe, John, Smith, Mary. Common
Misuse of Insulin-Pumps. Journal of
Juvenile Diabetes Studies. 2009
January 31; 145(7): 578-599.
PMCID: PMC4842371
http://publicaccess.nih.gov/
36. Articles don't get a PMCID number right away.
For Submission Methods A and B, use "PMC Journal - In
Process":
Doe, John, Smith, Mary. Common Misuse of Insulin-
Pumps. Journal of Juvenile Diabetes Studies. 2009
January 31; 145(7): 578-599. PMCID: PMC Journal - In
Process
For Submission Methods C and D, use the NIHMS ID
number.
Doe, John, Smith, Mary. Common Misuse of Insulin-
Pumps. Journal of Juvenile Diabetes Studies. 2009
January 31; 145(7): 578-599. NIHMSID: NIHMS12345
http://publicaccess.nih.gov/
39. Papaioannou G, Sebire NJ, McHugh K. Imaging of the unusual pediatric 'blastomas'.
Cancer Imaging. 2009 February 25; 9(1):1-11. PMCID: PMC2651735.
http://publicaccess.nih.gov/
40. NIH Manuscript Submission System (NIHMS)
http://www.nihms.nih.gov/
NIHMS FAQ
http://www.nihms.nih.gov/help/faq.shtml
NIHMS How To slide shows
http://www.nihms.nih.gov/help/#slideshow
NIHMS Helpdesk
http://www.nihms.nih.gov/db/sub.cgi?page=email&from=faq&mid=
NIH Public Access Policy
http://publicaccess.nih.gov/
NIH Public Access FAQ
http://publicaccess.nih.gov/FAQ.htm
TMC Library Public Access Policy Page:
http://resource.library.tmc.edu/services/NIHPublicAccess.cfm
MD Anderson Cancer Center Library: NIH Manuscript
Requirements
http://www.mdanderson.org/education-and-research/education-
and-training/schools-and-programs/research-training/programs-and-
courses/cancer-prevention-research-training-program/trainee-
resources/index.html
PubMed Central:
http://www.pubmedcentral.nih.gov
http://publicaccess.nih.gov/
Every year the National Institute of Health funds hundreds of research projects. The researchers who do these projects often publish their results in subscription-based academic journals. Approximately 80,000 articles per year arise from NIH funds. Because this research is funded by federal government money, the government decided it (and the tax-paying public) had a right to see the results of the research being done (aka: the journal articles).
Since most people and many libraries can't afford to subscribe to expensive medical journals,they passed a law requiring the researchers who publish their research results in subscription-based journals to post their articles in a free online digital library called PubMedCentral.
PubMedCentral (PMC) is the NIH's free digital archive of biomedical and life sciences journal literature and it's run by the NIH, NLM (National Library of Medicine), and NCBI (National Center for Biotech Info). http://www.ncbi.nlm.nih.gov/pmc/Researchers who get money from the NIH are required to submit their articles to the PubMedCentral within 12 months of publication.This only include peer-reviewed journal articles. NOT: Book chaptersEditorialsConference proceedingsNewslettersData sets DOES include:It does also include: All articles that arise directly from their awards, even if you are not an author or co-authorDates: You must comply if you get: Any direct funding from an NIH grant or cooperative agreement active in Fiscal Year 2008 or beyondAny direct funding from an NIH contract signed on or after April 7, 2008
Don’t be confused by the two similarly titled databases! PubMedCentral: http://www.ncbi.nlm.nih.gov/pmc/PubMed: http://www.ncbi.nlm.nih.gov/pubmed/PubMed: is mostly just citations includes other things than full-text peer-reviewed journal articles goes back to 1948. Includes PMC in it.
Anyone who gets any funding from: an NIH grant or cooperative agreement the NIH Intramural Program if NIH pays your salary
All principal investigators and their institutions
You need to submit your article to PMC upon its being accepted by a journal for publication. Your articles doesn’t, however, need to be made available to the public right away.You can create an embargo/delay for up to 12 months. Your article, however, must available to the public in PMC 12 months after it appears in the journal and no later. You need to do this if you receive: Any funding from an NIH grant active in Fiscal Year 2008 or beyond or Any funding from an NIH contract signed on or after April 7, 2008
You could lose current and future NIH fundingYour institution could lose current and future fundingIf you post an article to which you do not have sufficient rights, you could also face legal trouble from the journal/publisher for copyright infringement.
I know this is a lot of work but there’s a lot of good that comes out of it. More researchers will be able to see your paper and will refer to it in their future works. Your citation rankings will go up. You, as a researcher, will be able to see other people’s papers despite libraries having to cancel their journal subscriptions because of budget cutbacks.The public, who basically paid for the research with their tax dollars will be able to see the results of the research they funded.You’ll be better prepared for pending future Open Access laws from other agencies (eg: NSF)Ultimately you’ll help advance science and ultimately, improve human health.
Most journal publishers make you sign over all your copyright to them. You need to work with your publisher before you sign any publication contract to ensure the contract allows you to deposit your article in PMC. Most journals are familiar with the NIH requirements so it is not an issue.
Individual copyright agreements can take many forms. Some universities have specific legal language they want you to use. You should consult your institution's legal counsel to see if it has any specific policies or contract addendums. The MD Anderson Cancer Center does NOT have specific language it wants you to use so you need to create your own.
The NIH recommends adding the following language to your contract with your publisher.
It’s a good idea to come to an agreement with your publisher about the following as well.
The NIH Public Access site has helpful info on Copyright.
Penn State College of Medicine "Penn St. Copyright Addendum“ http://med.psu.edu/web/library/resources/pathfinders/pmcYale University "PubMed Cover Letter, Addendum, and Instructions“ http://www.yale.edu/grants/toolkit/index.htmlStanford School of Medicine "Stanford Copyright Addendum“ http://lane.stanford.edu/help/openaccess/nihpolicy.htmlNorris Medical Library http://www.usc.edu/hsc/nml/lib-information/nih/cover-letter.pdfWashington University http://becker.wustl.edu/pdf/NIH-Addendum-509.pdf
Here’s an example of an Author Adendumfrom Penn State College of Medicine. http://med.psu.edu/c/document_library/get_file?folderId=660446&name=DLFE-8312.pdfEach school uses different language. It’s up to you to figure out which is the best for your needs.
There are FOUR Submission methods. Some involve the final ARTICLE as it appears in the journal (with the journal's fonts, pagination, columns, etc.) Some involve the final peer-reviewed MANUSCRIPT (the version accepted for publication that includes all the modifications made in response to the peer review process. (without the journal's fonts, etc.)
In Method A, the publisher does it for you but the PI still needs to give: approval of the submitted materials (the PDF Receipt)approval of the final web version of the manuscript.
Here is a list of all the journals that do it for you: http://publicaccess.nih.gov/submit_process_journals.htm
If your journal publisher does not automatically publish all NIH articles to PubMed Central, you can contact them and see if they will deposit your specific article to PMC.Some do. Submission Methods A and B use the journal publisher’s final ARTICLE. Submission Methods C and D use the peer-reviewed MANUSCRIPT.
Submission Method C can be done by author, or someone in the author’s organization.
You upload your manuscript to PubMed Central through an online database called NIHMS= “National Institute of Health Manuscript Submission System”http://www.nihms.nih.gov/. You will need the NIH grant number(s)Grantee’s full nameAuthors’ full namesthe final peer-reviewed manuscriptany supporting figures, tables, charts, graphics, and supplementary data that were submitted to the publisherWhen do you do this? When the manuscript is accepted for publication. You can have an embargo date (delay period) of up to 12 months after date of publication. CHOOSE eRA Commons
It’s a relatively easy system and walks you through the process. Log in to NIHMS, create an accountEnter basic information about the grant, the journal, and upload your files.
The system tries to help you as much as possible.
Upload a copy of the accepted peer-reviewed manuscript files(s). NOT the final article!Remember in most cases you can NOT use the publisher’s pdf copyYou need to upload all the files individually (text, images, charts, graphs, etc.) NIHMS merges the manuscript files into one viewable document.
Upload files individually (text, charts, graphs, etc.). You can upload a wide variety of formats: Word, Word Perfect, PDF, PowerPoint, Excel, etc.The NIHMS system will organize the files and generate a pdf from them. The way the document appears in PMC may be a little different than what you expect. The systems places the files in a weird order. The pdf the systems creates for you will have all your charts, graphs, etc. will be stuck at the end of the document after the References. Example: Take a look at the pdf for: “Right Aortic Arch and Coarctation: A Rare Association” http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1805694/?tool=pubmedAfter you submit your manuscript, you’ll need to respond to an email approving the PDF and the release date. if the submitter is not the PI, both the PI and the submitter need to respond.
Submission Method D: Some publishers start the submission process for you in NIHMS but you must complete it. They deposit your final peer-reviewed manuscript for you and determine the number of months after publication when the article may be made publicly available in PMC. You are required to finish the submission process in NIHMS. You’ll be notified by the publisher to log into the NIHMS to review and ok the manuscript. You’ll need to reply to emails from NIH to complete the submission. Warning: This is generally an author-pay model-which costs money.
When you submit your article, it will be assigned a PMCID (PubMed Central ID number) and an NIHMS number. You must include the PMCID in: progress reports renewals new grant applicationsFor detailed information on where exactly you need to include the PMCID in your documents, see: "Reminder Concerning Grantee Compliance with Public Access Policy and Related NIH Monitoring Activities“ at http://grants.nih.gov/grants/guide/notice-files/not-od-08-119.html
Please note: the PMCID is NOT the same thing as the PMID number (PubMed ID number). The PMCID number appears on the article in both PubMed and PubMed Central.
Here’s an example of an online record that includes both PMCID and PMID.
If you only have the PMID, you can find out the PMCID using the PMCID Converter at:http://www.ncbi.nlm.nih.gov/sites/pmctopmid
Citation is fairly easy when you have the PMCID number. But unfortunately, you don’t get that right away. What do you do in the mean time if you have to cite your article before you get your PMCID?
Use these citation methods until you get your PMCID number. The NIHMSID is just a temporary number you get until you receive your PMCID.
There is more info on how and when to cite at the NIHPA website.
The institution has just upgraded to EndNote X4. You can request an upgrade through preferred software: http://teams/depts/itsvc/4info/_layouts/FormServer.aspx?XsnLocation=http://teams/depts/itsvc/4info/Preferred%20Software%20Requests/Forms/template.xsn&OpenIn=browser&SaveLocation=http%3A%2F%2Fteams%2Fdepts%2Fitsvc%2F4info%2FPreferred%20Software%20Requests&_InfoPath_Sentinel=1. EndNote X4 will automatically bring in the PMCID’s when you import citations from PubMed.
You can select the NIH style in EndNote X4. This style will format your citations correctly for you.