This document discusses LabTrove, an electronic laboratory notebook. It aims to improve research practices by making it easier for researchers to accurately record experiment details and collaborate with others. LabTrove allows linking records to data and resources, and facilitates communication between researchers compared to traditional paper notebooks. The document emphasizes that researchers play a critical role in creating reliable research records and notes LabTrove's goal is to support researchers rather than impose rigid structures.
Presentation by Hazel Hall at the LIS DREaM final conference.
More information about this event is available at http://lisresearch.org/dream-project/dream-event-5-conference-monday-9-july-2012/
Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Usersdgarijo
eScience 2014, Guarujá (Brasil). Abstract: Workflow reuse is a major benefit of workflow systems and shared workflow repositories, but there are barely any studies that quantify the degree of reuse of workflows or the practical barriers that may stand in the way of successful reuse. In our own work, we hypothesize that defining workflow fragments improves reuse, since end-to-end workflows may be very specific and only partially reusable by others. This paper reports on a study of the current use of workflows and workflow fragments in labs that use the LONI Pipeline, a popular workflow system used mainly for neuroimaging research that enables users to define and reuse workflow fragments. We present an overview of the benefits of workflows and workflow fragments reported by users in informal discussions. We also report on a survey of researchers in a lab that has the LONI Pipeline installed, asking them about their experiences with reuse of workflow fragments and the actual benefits they perceive. This leads to quantifiable indicators of the reuse of workflows and workflow fragments in practice. Finally, we discuss barriers to further adoption of workflow fragments and workflow reuse that motivate further work.
Presentation by Hazel Hall at the LIS DREaM final conference.
More information about this event is available at http://lisresearch.org/dream-project/dream-event-5-conference-monday-9-july-2012/
Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Usersdgarijo
eScience 2014, Guarujá (Brasil). Abstract: Workflow reuse is a major benefit of workflow systems and shared workflow repositories, but there are barely any studies that quantify the degree of reuse of workflows or the practical barriers that may stand in the way of successful reuse. In our own work, we hypothesize that defining workflow fragments improves reuse, since end-to-end workflows may be very specific and only partially reusable by others. This paper reports on a study of the current use of workflows and workflow fragments in labs that use the LONI Pipeline, a popular workflow system used mainly for neuroimaging research that enables users to define and reuse workflow fragments. We present an overview of the benefits of workflows and workflow fragments reported by users in informal discussions. We also report on a survey of researchers in a lab that has the LONI Pipeline installed, asking them about their experiences with reuse of workflow fragments and the actual benefits they perceive. This leads to quantifiable indicators of the reuse of workflows and workflow fragments in practice. Finally, we discuss barriers to further adoption of workflow fragments and workflow reuse that motivate further work.
BIBFLOW and the Libhub Initiative: Leveraging our past to define our future
Eric Miller, President, Zepheira
Jeff Penka, Director of Channel and Product Development, Zepheira
Emerging researchers slideshow jv r -7-fontseResearchatUCT
eResearch is 21st century discovery through the application of advanced computing and information technology. UCT eResearch seeks to accelerate and enhance research at UCT and help lead the eResearch movement in Africa
This presentation discusses the current dilemma with respect to Open Educational Resources (OER) search. It introduces existing OER search methodologies and highlights their weaknesses. The Desirability framework for parametrically measuring the usefulness of an OER is also discussed. The desirability framework uses the D-index to measure the openness, accessibility and relevance of an OER. OERScout, a text mining based faceted search engine is introduced for improved OER search. It uses autonomously identified domain specific keywords, the D-index and faceted search to allow focused OER search.
Curlew Research Brussels 2014 Electronic Data & Knowledge ManagementNick Lynch
Life Science externalisation and collaboration overview and the challenges that Life Science companies face in delivering successful data sharing with their partners in either Open Innovation or pre-competitive workflows
20141030 LinDa Workshop echallenges2014 - Linked Data AnalyticsLinDa_FP7
LinDA Workshop eChallenges2014 - Business Value Creation from Linked Data Analytics: The LinDA Approach by Anastasios Zafeiropoulos and Eleni Fotopoulou
Presentation by Mike Jones (Lab Automation Assoc. Director) seconded into my team at the SmartLab Exchange Europe conference in Berlin on 8th February (https://smartlabexchangeeurope.iqpc.co.uk/). Brief overview about the future of scientific labs and how digital transformations are changing our approach to data capture, advanced analytics and collaboration across different scientific teams. Examples include exploratory work in augmented reality, next generation interaction, smart touch interfaces and sensor technologies.
ESI Supplemental 3 Slides, Fit for PurposeDuraSpace
Fit for Purpose: Developing Business Cases for New Services in Research
Libraries
Supplemental Webinar 3 is part of the DuraSpace/ARL/DLF E-Science Institute
Thursday, November 29, 2012
Presented by Mike Furlough & David Minor
12.10.14 Slides, “Roadmap to the Future of SHARE”DuraSpace
Hot Topics: The DuraSpace Community Webinar Series
Series 10: All About the SHared Access Research Ecosystem (SHARE)
Webinar 3: Roadmap to the Future of SHARE
Wednesday, January 14, 2015
Presented by Judy Ruttenberg, Program Director, Association of Research Libraries
4.2.15 Slides, “Hydra: many heads, many connections. Enriching Fedora Reposit...DuraSpace
Hot Topics: The DuraSpace Community Webinar Series
Series 11: Integrating ORCID Persistent Identifiers with DSpace, Fedora and VIVO
Webinar 2: “Hydra: many heads, many connections. Enriching Fedora Repositories with ORCID.”
Thursday, April 2, 2015
Curated by Josh Brown, ORCID
Presented by: Laura Paglione, Technical Director, ORCID and Rick Johnson, Head of Digital Library Services, University of Notre Dame
Responsible, Reproducible Research & FAIR DATAJeremy Frey
Introductory talk at the Royal Society of Chemistry Faraday Division Software Tools for Physical Chemists Meeting.
http://www.rsc.org/events/detail/35843/faraday-division-chemistry-software-tools-meeting
BIBFLOW and the Libhub Initiative: Leveraging our past to define our future
Eric Miller, President, Zepheira
Jeff Penka, Director of Channel and Product Development, Zepheira
Emerging researchers slideshow jv r -7-fontseResearchatUCT
eResearch is 21st century discovery through the application of advanced computing and information technology. UCT eResearch seeks to accelerate and enhance research at UCT and help lead the eResearch movement in Africa
This presentation discusses the current dilemma with respect to Open Educational Resources (OER) search. It introduces existing OER search methodologies and highlights their weaknesses. The Desirability framework for parametrically measuring the usefulness of an OER is also discussed. The desirability framework uses the D-index to measure the openness, accessibility and relevance of an OER. OERScout, a text mining based faceted search engine is introduced for improved OER search. It uses autonomously identified domain specific keywords, the D-index and faceted search to allow focused OER search.
Curlew Research Brussels 2014 Electronic Data & Knowledge ManagementNick Lynch
Life Science externalisation and collaboration overview and the challenges that Life Science companies face in delivering successful data sharing with their partners in either Open Innovation or pre-competitive workflows
20141030 LinDa Workshop echallenges2014 - Linked Data AnalyticsLinDa_FP7
LinDA Workshop eChallenges2014 - Business Value Creation from Linked Data Analytics: The LinDA Approach by Anastasios Zafeiropoulos and Eleni Fotopoulou
Presentation by Mike Jones (Lab Automation Assoc. Director) seconded into my team at the SmartLab Exchange Europe conference in Berlin on 8th February (https://smartlabexchangeeurope.iqpc.co.uk/). Brief overview about the future of scientific labs and how digital transformations are changing our approach to data capture, advanced analytics and collaboration across different scientific teams. Examples include exploratory work in augmented reality, next generation interaction, smart touch interfaces and sensor technologies.
ESI Supplemental 3 Slides, Fit for PurposeDuraSpace
Fit for Purpose: Developing Business Cases for New Services in Research
Libraries
Supplemental Webinar 3 is part of the DuraSpace/ARL/DLF E-Science Institute
Thursday, November 29, 2012
Presented by Mike Furlough & David Minor
12.10.14 Slides, “Roadmap to the Future of SHARE”DuraSpace
Hot Topics: The DuraSpace Community Webinar Series
Series 10: All About the SHared Access Research Ecosystem (SHARE)
Webinar 3: Roadmap to the Future of SHARE
Wednesday, January 14, 2015
Presented by Judy Ruttenberg, Program Director, Association of Research Libraries
4.2.15 Slides, “Hydra: many heads, many connections. Enriching Fedora Reposit...DuraSpace
Hot Topics: The DuraSpace Community Webinar Series
Series 11: Integrating ORCID Persistent Identifiers with DSpace, Fedora and VIVO
Webinar 2: “Hydra: many heads, many connections. Enriching Fedora Repositories with ORCID.”
Thursday, April 2, 2015
Curated by Josh Brown, ORCID
Presented by: Laura Paglione, Technical Director, ORCID and Rick Johnson, Head of Digital Library Services, University of Notre Dame
Similar to International Digital Curation Conference Demo Talk LabTrove Digital Research Notebooks (20)
Responsible, Reproducible Research & FAIR DATAJeremy Frey
Introductory talk at the Royal Society of Chemistry Faraday Division Software Tools for Physical Chemists Meeting.
http://www.rsc.org/events/detail/35843/faraday-division-chemistry-software-tools-meeting
Digital IUPAC: The need for global representation of chemistry and chemical i...Jeremy Frey
Frey, Jeremy G. (2016) Digital IUPAC: The need for global representation of chemistry and chemical information in the digital age At 251st American Chemical Society National Meeting and Exposition - Computers in Chemistry, United States. 13 - 17 Mar 2016
Is open science an inevitable outcome of e-science?Jeremy Frey
Frey, Jeremy G. (2016) Is open science an inevitable outcome of e-science? At 251st American Chemical Society National Meeting & Exposition - Computers in Chemistry, United States. 13 - 17 Mar 2016.
Developing an open source ELN to support open & interdisciplinary scienceJeremy Frey
Frey, Jeremy (2017) Developing an open source ELN to support open & interdisciplinary science At Electronic Lab Notebooks: Solutions for Paperless Research, United Kingdom. 13 Jan 2017.
Frey, Jeremy G. (2017) Reducing uncertainty: The raison d'Être for Open Science At Open Science and the Chemistry Lab of the Future, Rüdesheim, Germany. 22 - 24 May 2017.
Do you want Software for your Business? Visit Deuglo
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A Study of Variable-Role-based Feature Enrichment in Neural Models of CodeAftab Hussain
Understanding variable roles in code has been found to be helpful by students
in learning programming -- could variable roles help deep neural models in
performing coding tasks? We do an exploratory study.
- These are slides of the talk given at InteNSE'23: The 1st International Workshop on Interpretability and Robustness in Neural Software Engineering, co-located with the 45th International Conference on Software Engineering, ICSE 2023, Melbourne Australia
Enterprise Resource Planning System includes various modules that reduce any business's workload. Additionally, it organizes the workflows, which drives towards enhancing productivity. Here are a detailed explanation of the ERP modules. Going through the points will help you understand how the software is changing the work dynamics.
To know more details here: https://blogs.nyggs.com/nyggs/enterprise-resource-planning-erp-system-modules/
AI Pilot Review: The World’s First Virtual Assistant Marketing SuiteGoogle
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(2) SocioWave Review: https://sumonreview.com/sociowave-review
(3) AI Partner & Profit Review: https://sumonreview.com/ai-partner-profit-review
(4) AI Ebook Suite Review: https://sumonreview.com/ai-ebook-suite-review
OpenMetadata Community Meeting - 5th June 2024OpenMetadata
The OpenMetadata Community Meeting was held on June 5th, 2024. In this meeting, we discussed about the data quality capabilities that are integrated with the Incident Manager, providing a complete solution to handle your data observability needs. Watch the end-to-end demo of the data quality features.
* How to run your own data quality framework
* What is the performance impact of running data quality frameworks
* How to run the test cases in your own ETL pipelines
* How the Incident Manager is integrated
* Get notified with alerts when test cases fail
Watch the meeting recording here - https://www.youtube.com/watch?v=UbNOje0kf6E
Artificia Intellicence and XPath Extension FunctionsOctavian Nadolu
The purpose of this presentation is to provide an overview of how you can use AI from XSLT, XQuery, Schematron, or XML Refactoring operations, the potential benefits of using AI, and some of the challenges we face.
Zoom is a comprehensive platform designed to connect individuals and teams efficiently. With its user-friendly interface and powerful features, Zoom has become a go-to solution for virtual communication and collaboration. It offers a range of tools, including virtual meetings, team chat, VoIP phone systems, online whiteboards, and AI companions, to streamline workflows and enhance productivity.
Code reviews are vital for ensuring good code quality. They serve as one of our last lines of defense against bugs and subpar code reaching production.
Yet, they often turn into annoying tasks riddled with frustration, hostility, unclear feedback and lack of standards. How can we improve this crucial process?
In this session we will cover:
- The Art of Effective Code Reviews
- Streamlining the Review Process
- Elevating Reviews with Automated Tools
By the end of this presentation, you'll have the knowledge on how to organize and improve your code review proces
AI Fusion Buddy Review: Brand New, Groundbreaking Gemini-Powered AI AppGoogle
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(2) SocioWave Review: https://sumonreview.com/sociowave-review
(3) AI Partner & Profit Review: https://sumonreview.com/ai-partner-profit-review
(4) AI Ebook Suite Review: https://sumonreview.com/ai-ebook-suite-review
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6. Faraday’s
laboratory
notebooks
are
also
remarkable
in
the
amount
of
detail
that
they
give
about
the
design
and
setting
up
of
experiments,
interspersed
with
comments
about
their
outcome
and
thoughts
of
a
more
philosophical
kind.
All
are
couched
in
plain
language,
with
many
vivid
phrases
of
delightful
spontaneity….
Peter
Day,
‘The
Philosopher’s
Tree:
A
Selection
of
Michael
Faraday’s
Writings’
25
Feb
2014
IDCC
2014
7. Responsible
Researchers
• Educa&on
of
researchers
is
cri&cal
– They
need
to
understand
that
they
are
the
most
important
part
of
the
chain
that
creates
reliable
value
in
the
research
record
– They
are
the
best
place
people
to
record
an
accurate
account
– They
need
to
be
able
to
do
this
easily
and
see
the
value
to
themselves
in
doing
so
– LabTrove
makes
this
possible
–
it
does
not
impose
“the
best”
soluOon
but
allows
research
pracOce
to
evolve
25
Feb
2014
IDCC
2014
8. The
integrity
of
science
as
a
discipline
rests
on
the
ability
of
scien;sts
to
reproduce
the
claims
of
others.
While
none
of
the
organic
chemistry
journals
go
to
the
same
lengths
as
Organic
Syntheses,
where
each
procedure
must
be
reproduced
as
described
in
an
independent
laboratory
before
publica;on,
……..
sufficient
detail
so
that
the
procedures
can
be
reproduced
and
provide
sufficient
data
to
establish
the
structures
…….
This
informa;on
is
necessary
for
the
review
process
……
to
base
their
experiments
on
published
work.
Methods
are
as
important
as
the
data
25
Feb
2014
IDCC
2014
10.
Electronic
Laboratory
Notebooks
ELNs
Comparison
with
tradiOonal
paper
notebooks
CommunicaOon
CollaboraOon
Sharing
Linking
CuraOng
• Higher
Quality
Record
• Natural
linking
to
data
and
external
resources
• Easier
CollaboraOon
• Improved
planning
• Improved
discussions
• Efficiency
gain
in
producOon
of
presentaOons/reports
• Change
the
nature
of
Professor/Student
interacOons
25
Feb
2014
IDCC
2014
11. 1980
1990
2000
2010
CollaboraOon
SemanOcs
User
focus
Web
2.0
RS/1
PNNL
Smart
Tea
LabTrove
Trust
in
ELNs
for
IP
compliance
Developments
in
ELN
implementaOon
and
characterisOcs
Commercial
offerings
25
Feb
2014
IDCC
2014
13. How
do
we
communicate?
• Surprisingly
difficult
to
explain
what
a
process
involves
• Much
of
the
detail
is
assumed
to
be
understood
and
not
explicitly
discussed
• This
is
where
the
mis-‐
understandings
usually
arise.
If
you
can't
describe
what
you
are
doing
as
a
process,
you
don't
know
what
you're
doing.
W.
Edwards
Deming
Growing
need
for
the
global
(virtual)
equivalent
of
the
“Tea
Room”
25
Feb
2014
IDCC
2014
20. If
you
have
a
plan
then
make
use
of
it!
Just
like
the
UK
COSHH
safety
plans
are
ideal
basis
for
driving
an
Electronic
Laboratory
Notebook
With
a
liIle
extra
work
a
plan
becomes
a
useful
way
to
provide
context
for
the
digital
record
25
Feb
2014
IDCC
2014
21. DisseminaOon
• Methods
and
emphasis
varies
with
discipline
– Journal
vs
Conference
– Pure
vs
Applied
– Research
vs
ApplicaOon
• Authorship
&
Acknowledgements
– Who
goes
on
the
paper?
– Who
is
menOoned
in
the
press
release?
– Do
you
acknowledge
the
technician?
25
Feb
2014
IDCC
2014
22. PublicaOon
• On
publicaOon
make
the
LabTrove
pages
open
and
link
from
the
publicaOon
(direct
or
via
datacite
doi)
• Select
and
export
LabTrove
entries
as
staOc
HTML
(or
XML)
to
archive
as
Journal
supplementary
data,
which
maintains
the
links
between
LabTrove
records
• Provide
on
going
research
record
as
an
acOve
LabTrove
site
or
HTML
archive
web
site
to
align
with
RCUK
data
policies
• Achieve
Intelligent
Access
(Royal
Society)
as
the
data
files
are
linked
to
by
LabTrove
posts
which
explain
how
and
why
they
exist
and
what
they
mean
25
Feb
2014
IDCC
2014
23. ValidaOon
• Increasing
the
value
of
data
• How
to
bring
all
the
necessary
informaOon
together
to
enable
appropriate
validaOon
• Increasingly
difficult
&
expensive
to
achieve
• Need
provenance
and
context
• EssenOal
step
otherwise
just
a
collecOon
of
items
25
Feb
2014
IDCC
2014
24. 3D
Printers
Change
in
the
whole
way
we
design
and
build
Shared
Space?
25
Feb
2014
IDCC
2014
25. Archiving
of
data
• Experiments
are
oien
repeated
– Data
stored
locally
on
a
computer
and
can’t
be
found
– HandwriOng
can’t
be
read
– Laboratory
notebooks
lost
or
damaged
– Correct
data
not
recorded
first
Ome
round
hp://www.ecs.soton.ac.uk/regenesis/pictures
25
Feb
2014
IDCC
2014
26. Open
Source
-‐
Hosted
Service
• LabTrove
is
Open
Source
free
to
download
• Clearly
sekng
up
yourself
incurs
setup
and
maintenance,
backup
and
support
costs!!
• So
ideal
if
LabTrove
Service
is
provided
as
a
hosted
service
which
offers
support
24/7
help
• Liberata
is
a
Janet
Broker
approved
provider
(meets
RCUK
requirements)
• We
are
working
with
Liberata
to
provide
the
UK
HE
LabTrove
Service
25
Feb
2014
IDCC
2014