ImageJ and AstroImageJ Software Presentation

ImageJ
POR: PROF. PÉREZ SANABRIA
IMAGEJ & ASTROIMAGEJ- POR: PROF. PÉREZ SANABRIA 1

ImageJ
Open source Java image processing
program inspired by NIH Image.
Runs on any computer with a Java 1.8
or later virtual machine.
Downloadable distributions are
available for Windows, Mac OS X and
Linux.
Has thousands of plugins and macros
for performing a wide variety of tasks.

ImageJ Website
https://imagej.net/Welcome

ImageJ Website
https://imagej.nih.gov/ij/index.html

Java Download
https://java.com/en/download/

ImageJ Toolbar
Rectangle
Polygon
Freehand
Straight
Multi-point
Angle
Wand
Text
Oval
MagnifyingGlass
ColorPicker
Scrolling
DeveloperMenu
Arrow
CommandFinder
FloodFill
MoreTools
Paintbrush

More Tools

Tabs in ImageJ

File Tab

Edit Tab

Image Tab

Process Tab

Analyze Tab

Plugins Tab

Window Tab

Help Tab

Samples Examples in
ImageJ

Samples
AuPbSn 40 Bat Cochlea Volume

Samples
Bat Cochlea Renderings
Blobs

Samples
Bridge Cardio

Samples
Cell Colony Clown

Samples
Confocal Series
CT

Samples
Dot Blot
Embryos

Samples
Fluorescent Cells Fly Brain

Samples
Gel HeLA Cells

Samples
Image with Overlay Leaf

Samples
Lena Line Graph

Samples
Mitosis MRI Stack

Samples
M51 Galaxy Rat Hippocampal Neuron

Samples
Nile Bend Organ of Corti

Samples
Particles
T1 Head

Samples
T1 Head Renderings TEM Filter

Samples
Tree Rings

Macros Examples in
ImageJ

Macro Tabs

Example Plot Script

Semi-log Plot

Arrow Plot Script

Damped Wave Plot

Dynamic Plot

Dynamic Plot 2D

Custom Plot Symbol

Histograms

Bar Charts

Plot Shapes

Shape Script

Sine Cosine Table

Overlay

Stack Overlay

Array Functions

Dual Progress Bars

Grab Viridis Colormap

Synthetic Images 1/8

Gamma Adjuster Script

Terabyte Virtual Stack

FFT Filter

ImageJ User Guide
https://imagej.nih.gov/ij/docs/guide/user-guide.pdf

AstroImageJ

AstroImageJ
Application designed to process and analyze
the images captured by astronomers.
Extended version of the ImageJ program that
includes multiple astronomy macros and plug-
ins.
Load the images, make changes and export
them to another file type including FITS, LUT
and raw image formats.

AstroImageJ Download
http://www.softpedia.com/get/Science-CAD/AstroImageJ.shtml

AstroImageJ (AIJ) Features

AstroImageJ Website
http://www.astro.louisville.edu/software/astroimagej/

ImageJ Toolbar
Rectangle
Polygon
Freehand
Straight
Multi-point
Angle
Wand
Text
Oval
MagnifyingGlass
ColorPicker
Scrolling
DeveloperMenu
Arrow
CommandFinder
FloodFill
MoreTools
Paintbrush

AstroImageJ Toolbar
Rectangle
Polygon
Freehand
Straight
Angle
Oval
Multi-point
Wand(tracing)
Text
MagnifyingGlass
Scrolling
ColorPicker
MoreTools
AstronomyTool
AperturePhotometry
MultipleAperture
ClearOverlay
Multiplot
ReadMeasurementTable
CCDDataProcessor
CoordinateConverter

AstroImageJ More Tools

Arrow Labelling Tools Drawing Tools
MovieandStack
CursorColor
ArrowDrawing
AbortProcess
OnLineDocumentation
PaintbrushTool
VersionandUpdateInfos
About“Image,StackandTimelapse”
PencilTool
EraserTool
ArrowTool
FloodFillTool
SprayCanTool

Example Icons Lookup Tables
HomeTool
AboutTheseMacros
ManTool
CubeTool
FaceTool
LenaTool
20thCenturyTool
GrayscaleLUT
FireLUT
AdjustBrightnessandContrast
MacTool
EditLUT
NextLUT
PreviousLUT
PrimaryColors
InvertLUT

Magic Montage Plugins
MontageSyncTool
bar
AnalyzeMenu
MacrosMenu
3DMenu
AnnotTool
MontageShufflerTool
SelectPanelsTool
AutoMontage
FiltersMenu
ToolsMenu
ScriptsMenu
ExamplesMenu

Scale Bar Tools for Microscopes Stack Tools
Start/StopAnimation
OnLineDocumentation&Demo
MicroscopeProfilesManagerMenu
AvailableMicroscopeProfilesMenu
ExtractandEditImage
ScaleBar
VersionandUpdateInfos
FirstSlice
StacksMenu
PreviousSlice
NextSlice
About“ScaleBarToolsforMicroscopes”
AddSlice
LastSlice
DeleteSlice

Toolset Creator

AstroImageJ Tab Plugins

AstroImageJ Tab Help

AstroImageJ Examples
http://www.astro.louisville.edu/software/astroimagej/examples/

AstroImageJ FITS Image 2D

Asteroid FITS File

AstroImageJ FITS Image 3D

AstroImageJ FITS Image Tabs

AstroImageJ FITS Image Toolbar
deletecurrentlydisplayedslidefromstack
displayasimagenegative
displayskybackgroundregions
displaysourceidentification
displaysourceintegratedcounts
centroidaperture
changeaperturesettings
clearapertureoverlay
drawallstoredaperturesinoverlay
clearmeasurementstabledata
performmulti-aperturephotometry
alignstackusingapertures
displayfitsheader
zoominfast
zoomin
zoomout
zoomtofitimagetowindows
autobrightnessandcontrast

Objects Astronomical in FITS Files
https://www.spacetelescope.org/projects/fits_liberator/datasets/

FITS Files - Datasets for Education
https://www.spacetelescope.org/projects/fits_liberator/eagledata/

FITS Files - Datasets for Education

VLA Sky Survey Quick Look Images
https://archive-new.nrao.edu/vlass/quicklook/VLASS1.1/

VLA Sky Survey Summary
https://archive-new.nrao.edu/vlass/VLASS_dyn_summary.php

VLA Sky Survey FITS Image Files

FITS File with Table

AstroImageJ User Guide 2.0
http://www.astro.louisville.edu/software/astroimagej/installation_packages/AstroImageJ_user_guide_2.0_partial.pdf

About ImageJ & AstroImageJ

Closure
DOUBTS
QUESTIONS
COMMENTS
SUGGESTIONS

ImageJ and AstroImageJ Software Presentation

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ImageJ and AstroImageJ Software Presentation