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HW#2 Genetics 320, Fall 07. Due Wed, Sept 12 The rules for this homework are the same: type any answers that involve words,  except  if you are filling in a table then write CLEARLY, or it will be marked wrong. If you don’t know what CLEARLY means, type your answers in the table.  I give you a lot more problems this week than last. Many questions are revised from previous exam questions, to give you an idea what exam questions might look like.
Page 1 ,[object Object],[object Object],p53 binding site gcgTATAccgctacgtagg c tttATGCGATTTAAACCCTAGcccgcaag +1  +5 Transcribed? Translated (#amino acids) Functional? a.  p53+/+  YES  YES (full length)  YES b. TATAcc to TggAcc c. Delete c at +1 d. Insert T between 7G &8C e.  Delete ccc after TAG f. AAA to AAG Enter YES or NO. 1pt each. Enter # of amino acids if different from wildtype gene.  You can  explain ambiguities on the other side of this sheet (you shouldn’t need to!)  g. Explain briefly your answer to c  and   2d.
Page 2 2. Recombination  ,[object Object],[object Object],[object Object],b-  a- B+  A+ c.  Harder question : This AaBb mitotic cell (diagram) could generate either  aaBb, Aabb, and aabb cells. Which of these three would be formed  least  frequently and why? In a Mitotic cell-a-c . In a Meiotic cell d.  d. Draw a double Holliday structure intermediate from strand invasion step before replication occurs. NEATLY! - Draw an arrow to the D loop .  Indicate the polarity  of all 4 strands in your diagram.  - Circle  each 3’ site where DNA polymerase synthesizes DNA, and place  dots  what it synthesizes.  - Place a  square  around  ONE  Holliday structure and a  triangle  around one site of potential heteroduplex (without further branch migration)  -Place  slashs  showing one way this could be resolved to form a crossover.
Page 3 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
4.  Consider the cell 1 and cell 2 with the chromosomes shown. In Cell 1, Gene A is 50cM from the centromere, and in Cell 2 Gene C is 10cM from the centromere. In both cells the wildtype allele is on the top homolog, and the mutant allele on the bottom homolog. This problem involves  mitotic recombination .   Gene A+ + - a.  Will Cell 1 or Cell2 form homozyous mutants at the highest frequency? Explain.  b.  A new Cell 3 is like Cell 1 except that it has a recessive lethal mutation. d-  10cM to the left of the GeneA+ allele. Where would the D+ allele be in Cell 3?  (this should be obvious) c.  Will Cell 1 or Cell 3  give the most viable a-/a- mutants? Explain.   Cell 1 Cell 2 Gene C + -
5 . The mutational spectrum found in cancer cells of the p97  protein and its domains is shown. (There are 4 “hotspots” in the DNA binding domain.) p97 mutant cells get cancer at a high rate.   Amino Acid#  1  150  250  350  390  450  545 Transcriptional Activation  DNA binding  Trimerization domain  ,[object Object],[object Object],[object Object],Frequency  Of  mutations
6.  Explain why a person with a germline genotype of p53+/- is prone to cancer while a person with a germline genotype of CFRT-/+ is not prone to cystic fibrosis.   7.  In the pedigree shown below, compare the relative extent of heterology (between any two homologous chromosome)  in individual 1, individual 2 and individual 3.   1 2 3
8.  Below are two genes that are present in a diploid cell on different chromosomes. Rare translocations occur between Gene A site 1 and Gene B site 3, or between GeneA site 2 and Gene B site 3. Site 1, 2 and 3 are all in exons.  The recombination occurs within runs of polyA at each site.  The length of As is show.  One example of a site 1-site3 translocation is shown.   ,[object Object],[object Object],[object Object],I-A I-B TATA Box TATA Box A30 +1 p53 site A50 A5 +1 p53 site A TATA Box +1 40 Site 1  Site 2 Site 3 GeneA GeneB GeneA-B

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Hw2

  • 1. HW#2 Genetics 320, Fall 07. Due Wed, Sept 12 The rules for this homework are the same: type any answers that involve words, except if you are filling in a table then write CLEARLY, or it will be marked wrong. If you don’t know what CLEARLY means, type your answers in the table. I give you a lot more problems this week than last. Many questions are revised from previous exam questions, to give you an idea what exam questions might look like.
  • 2.
  • 3.
  • 4.
  • 5. 4. Consider the cell 1 and cell 2 with the chromosomes shown. In Cell 1, Gene A is 50cM from the centromere, and in Cell 2 Gene C is 10cM from the centromere. In both cells the wildtype allele is on the top homolog, and the mutant allele on the bottom homolog. This problem involves mitotic recombination . Gene A+ + - a. Will Cell 1 or Cell2 form homozyous mutants at the highest frequency? Explain. b. A new Cell 3 is like Cell 1 except that it has a recessive lethal mutation. d- 10cM to the left of the GeneA+ allele. Where would the D+ allele be in Cell 3? (this should be obvious) c. Will Cell 1 or Cell 3 give the most viable a-/a- mutants? Explain. Cell 1 Cell 2 Gene C + -
  • 6.
  • 7. 6. Explain why a person with a germline genotype of p53+/- is prone to cancer while a person with a germline genotype of CFRT-/+ is not prone to cystic fibrosis. 7. In the pedigree shown below, compare the relative extent of heterology (between any two homologous chromosome) in individual 1, individual 2 and individual 3. 1 2 3
  • 8.