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efflux pumps
1
Mahsa jalili
MSc. Medical microbiology
1
2
3
4
Infectious diseases remain one of the principal causes of morbidity and
mortality in the world .
Efflux pumps are elements that antibiotics are effective in resistance
and are involved in the pathogenesis of bacteria .
efflux pumps are important for processes of detoxification of
intracellular metabolites, bacterial virulence in both animal an Man
hosts, and etc .
So today we're in a selection pressure for antibiotic use and for
the treatment of bacterial infections are a new development .
5
6
7
8
Efflux as a mechanism for antibiotic resistance was first
described in 1980
Multidrug efflux pumps cause serious problems in cancer chemotherapy
and the treatment of bacterial infections.
Antimicrobial resistance has been considered the new challenge of
the 21st century for example : Salmonella enterica , E coli
Different studies have demonstrated that MDR pumps are
capable of extruding not only antibiotics but also antiseptics.
Functional role of MDR pumps in clinical and nonclinical environments.
1
2
3
Efflux pumps involved in the excretion of drugs and chemicals.
Efflux pump protects microorganisms against antibiotics of chemicals and
toxins and stress.
Importance :
4
5
6
The efflux pumps is responsible for the survival of microorganisms
in various environments
Efflux pumps involved in the synthesis of bacterial surface
structures
Efflux pumps involved in balance of solutions ,homeostasis , and
ionic balance
Importance :
The most important mechanisms of drug resistance:
• Inactivating
• Change the form of the drug
• The aim of antibiotic succession and delegation
• Increase the amount of target
• Reduced affinity:
Recombination
Modification enzymes
• Efflux pumps
7
Efflux pumps which was first known : Efflux pumps was for a family of tetracycline
Bacterial efflux pumps are classified into five major superfamilies, based on the
amino acid sequence and the energy source
In the prokaryotic kingdom there are five major families of efflux transporters.
Classification :
(ABC)
superfamily
(RND)
family
(SMR)
family
(MFS)
superfamily
(MATE)
family
(ATP)
binding
cassette
the
resistance-
nodulation-
division
the small
multidrug
resistance
major
facilitator
superfamily
(MFS)
the
multidrug
and toxic
compound
extrusion
05 .
Thesepumpshave7phylogeneticfamilies.
.Sofar,48 ABCpumpshavebeenknown.
Thesepumpshave7phylogeneticfamilies.
largest families
17 MFS Families
bacteria, archaea and eukaryotic
The smaller size . In unusual bacteria.
this pumps contain only 100-120 amino acid
ABC
RNA
Eukaryotic and Archaebacteria
SMR
MFS
14 Phylogenetic Families
in bacteria, archaea and eukaryotic.
same size with mfs families.
MATE
Classification:
Schematic representation of the main types of bacterial efflux systems
11
Gram-positive bacteria
Gram-negative bacteria
12
Energy used in the efflux pump :
• The energy source:
• ABC transporters are dependent on ATP hydrolysis;
•
• MFS, RND and SMR are proton-driven efflux pumps.
• MATE transporters consist of a Na/H drug antiporter system.
13
)The primary active transport(
)Secondary active transport)
energy source
14
Gram-negative species with known efflux systems:
15
Haemophilusinfluenae
Campylobacter jejuni
Helicobacter pylori
Vibrio parahaemolyticus
Vibrio cholerae
Neisseria
Salmonella Typhimurium
Shigella dysenteriae
Klebsiella pneumoniae
Enterobacter aerogenes
Serratia marcescens
Proteus vulgaris
Citrobacter freundii...
 Bacteroides fragilis...
And ….
• Important note :
The resistance who efflux pump caused by antibiotic depends on the nature of microorganisms
and substrate
16
Structure of drug efflux systems:
• In Gram-positive bacteria:
• A cytoplasmic membrane transport proteins that recognize specific substrate.
and led to resistance.
• In Gram-negative bacteria:
• 3 component in a system:
Two transport proteins within the membrane.
A periplasmic lipoprotein adapter
17
18
ABC tranceporters :
• In contrast with Prokaryotes, the major mechanism of efflux in eukaryotes.
• energy source : hydrolysis of ATP.
• p-gp pump and MDR pumps. ( anticancer drug)
• ABC including : 200 amino acid
• LSGGQ sequence on all members of the family.
E.coli
E.coli
S.Typhimurium
Bacillus subtilis Eukaryotes
20
The SMR family :
• The unusual bacteria
• 100 amino acids that made the four-helix
• For example : EmrE is in E.coli
• QacH-2 in Staphylococcus aureus causes a resistance to number of disinfectants.
21
The MFS family :
• In eukaryotes, bacteria and Archaea.
• MFS are made of 400 amino acids arranged in 12 Helix membrane and they heve cytoplasmic
loop between helices 6 and 7.
• Mfs transport of drugs have two classes:
1- Class B: Transport tetracycline in E Coli
2-class k: Transport tetracycline in Staphylococcus aureus
• MFS characterized is multi-drug pumps
•
• transmission sugar and drugs.
22
23
RND transporters :
• 1,000 amino acids.
• Size : larg
• antiports / proton acts
• 12-helix structure.
• There are gram-negative bacteria.
• Pump compounds: toxic metal ions, lipophilic drugs such as tetracycline, quinolones, and beta-
lactamase and chloramphenicol factors chemotherapy.
24
25
Structure :
• DNA structure is composed of 3 components:
1-AcrA: inner membrane.
2-AcrB: inner membrane.
3-TolC: in the outer membrane.
 The third monomer forming the inner membrane creates an area that extends Periplasmic..
26
TOLC PROTEIN
• a multifunctional protein.
• Moving in small drugs and toxins polypeptide.
• for example: hemolysin .
• TolC is divided into two domains:
1-domain beta : in the outer membrane.
2-domain alpha : in the periplasmic space.
 TolC several actions have to cross the outer membrane periplasmic substrates.
27
28
β-barrel :
• Opens into the outer membrane.
• Beta consists of 12 strings and are arranged in a right-handed barrel.
• Α-helical :
• 12 left-handed filament is composed of two types of grape :
Short
Tall
29
30
• This substrate system:
Aminoglycosides
Tetracycline
Fluoroquinolones
Chloramphenicol
Trimethoprim
31
32
34
MATE transporters :
• 450 amino acids
• arranged in 12 Helix .
• Na+ or protons.
• NorM in Vibrio parahaemolyticus resistance to color, aminoglycosides
and fluoroquinolones.
• YdhE in E.Coli resistance to antibiotics
• MepA in Staphylococcus aureus, tetracycline, detergents and colors .
• PepM in Pseudomonas aeruginosa substrate fluoroquinolones, is
ethidium bromide and disinfectants.
35
• The pump substrates include:
Gentamicin
Ciprofloxacin
Erythromycin
Trimethoprim
36
structures of multidrug transporters
Genetic of the efflux pump E.coli:
• Efflux system in E Coli:
Chromosome
(plasmids, transposons, Integron)
38
• There are various regulators in E. Coli:
• Including : SdiA ,Sox ,Rob ,Mar A
39
Efflux pump genes in Salmonella :
40
Efflux pump genes in P. aeruginosa.
Efflax pumps
Efflax pumps

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Efflax pumps

  • 2. 1 2 3 4 Infectious diseases remain one of the principal causes of morbidity and mortality in the world . Efflux pumps are elements that antibiotics are effective in resistance and are involved in the pathogenesis of bacteria . efflux pumps are important for processes of detoxification of intracellular metabolites, bacterial virulence in both animal an Man hosts, and etc . So today we're in a selection pressure for antibiotic use and for the treatment of bacterial infections are a new development .
  • 3. 5 6 7 8 Efflux as a mechanism for antibiotic resistance was first described in 1980 Multidrug efflux pumps cause serious problems in cancer chemotherapy and the treatment of bacterial infections. Antimicrobial resistance has been considered the new challenge of the 21st century for example : Salmonella enterica , E coli Different studies have demonstrated that MDR pumps are capable of extruding not only antibiotics but also antiseptics.
  • 4. Functional role of MDR pumps in clinical and nonclinical environments.
  • 5. 1 2 3 Efflux pumps involved in the excretion of drugs and chemicals. Efflux pump protects microorganisms against antibiotics of chemicals and toxins and stress. Importance :
  • 6. 4 5 6 The efflux pumps is responsible for the survival of microorganisms in various environments Efflux pumps involved in the synthesis of bacterial surface structures Efflux pumps involved in balance of solutions ,homeostasis , and ionic balance Importance :
  • 7. The most important mechanisms of drug resistance: • Inactivating • Change the form of the drug • The aim of antibiotic succession and delegation • Increase the amount of target • Reduced affinity: Recombination Modification enzymes • Efflux pumps 7
  • 8. Efflux pumps which was first known : Efflux pumps was for a family of tetracycline Bacterial efflux pumps are classified into five major superfamilies, based on the amino acid sequence and the energy source In the prokaryotic kingdom there are five major families of efflux transporters. Classification :
  • 10. 05 . Thesepumpshave7phylogeneticfamilies. .Sofar,48 ABCpumpshavebeenknown. Thesepumpshave7phylogeneticfamilies. largest families 17 MFS Families bacteria, archaea and eukaryotic The smaller size . In unusual bacteria. this pumps contain only 100-120 amino acid ABC RNA Eukaryotic and Archaebacteria SMR MFS 14 Phylogenetic Families in bacteria, archaea and eukaryotic. same size with mfs families. MATE
  • 11. Classification: Schematic representation of the main types of bacterial efflux systems 11
  • 13. Energy used in the efflux pump : • The energy source: • ABC transporters are dependent on ATP hydrolysis; • • MFS, RND and SMR are proton-driven efflux pumps. • MATE transporters consist of a Na/H drug antiporter system. 13 )The primary active transport( )Secondary active transport)
  • 15. Gram-negative species with known efflux systems: 15 Haemophilusinfluenae Campylobacter jejuni Helicobacter pylori Vibrio parahaemolyticus Vibrio cholerae Neisseria Salmonella Typhimurium Shigella dysenteriae Klebsiella pneumoniae Enterobacter aerogenes Serratia marcescens Proteus vulgaris Citrobacter freundii...  Bacteroides fragilis... And ….
  • 16. • Important note : The resistance who efflux pump caused by antibiotic depends on the nature of microorganisms and substrate 16
  • 17. Structure of drug efflux systems: • In Gram-positive bacteria: • A cytoplasmic membrane transport proteins that recognize specific substrate. and led to resistance. • In Gram-negative bacteria: • 3 component in a system: Two transport proteins within the membrane. A periplasmic lipoprotein adapter 17
  • 18. 18
  • 19. ABC tranceporters : • In contrast with Prokaryotes, the major mechanism of efflux in eukaryotes. • energy source : hydrolysis of ATP. • p-gp pump and MDR pumps. ( anticancer drug) • ABC including : 200 amino acid • LSGGQ sequence on all members of the family.
  • 21. The SMR family : • The unusual bacteria • 100 amino acids that made the four-helix • For example : EmrE is in E.coli • QacH-2 in Staphylococcus aureus causes a resistance to number of disinfectants. 21
  • 22. The MFS family : • In eukaryotes, bacteria and Archaea. • MFS are made of 400 amino acids arranged in 12 Helix membrane and they heve cytoplasmic loop between helices 6 and 7. • Mfs transport of drugs have two classes: 1- Class B: Transport tetracycline in E Coli 2-class k: Transport tetracycline in Staphylococcus aureus • MFS characterized is multi-drug pumps • • transmission sugar and drugs. 22
  • 23. 23
  • 24. RND transporters : • 1,000 amino acids. • Size : larg • antiports / proton acts • 12-helix structure. • There are gram-negative bacteria. • Pump compounds: toxic metal ions, lipophilic drugs such as tetracycline, quinolones, and beta- lactamase and chloramphenicol factors chemotherapy. 24
  • 25. 25
  • 26. Structure : • DNA structure is composed of 3 components: 1-AcrA: inner membrane. 2-AcrB: inner membrane. 3-TolC: in the outer membrane.  The third monomer forming the inner membrane creates an area that extends Periplasmic.. 26
  • 27. TOLC PROTEIN • a multifunctional protein. • Moving in small drugs and toxins polypeptide. • for example: hemolysin . • TolC is divided into two domains: 1-domain beta : in the outer membrane. 2-domain alpha : in the periplasmic space.  TolC several actions have to cross the outer membrane periplasmic substrates. 27
  • 28. 28
  • 29. β-barrel : • Opens into the outer membrane. • Beta consists of 12 strings and are arranged in a right-handed barrel. • Α-helical : • 12 left-handed filament is composed of two types of grape : Short Tall 29
  • 30. 30
  • 31. • This substrate system: Aminoglycosides Tetracycline Fluoroquinolones Chloramphenicol Trimethoprim 31
  • 32. 32
  • 33.
  • 34. 34
  • 35. MATE transporters : • 450 amino acids • arranged in 12 Helix . • Na+ or protons. • NorM in Vibrio parahaemolyticus resistance to color, aminoglycosides and fluoroquinolones. • YdhE in E.Coli resistance to antibiotics • MepA in Staphylococcus aureus, tetracycline, detergents and colors . • PepM in Pseudomonas aeruginosa substrate fluoroquinolones, is ethidium bromide and disinfectants. 35
  • 36. • The pump substrates include: Gentamicin Ciprofloxacin Erythromycin Trimethoprim 36
  • 37. structures of multidrug transporters
  • 38. Genetic of the efflux pump E.coli: • Efflux system in E Coli: Chromosome (plasmids, transposons, Integron) 38
  • 39. • There are various regulators in E. Coli: • Including : SdiA ,Sox ,Rob ,Mar A 39
  • 40. Efflux pump genes in Salmonella : 40
  • 41. Efflux pump genes in P. aeruginosa.

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