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Challenges in Medical Image
Diagnostics
Challenges in Medical Image
Diagnostics
DSC ADRIA 23
Data Driven Society
Dr. Sc. Franko Hržić mag. Ing. Comp.
University of Rijeka, Faculty of Engineering, Department of Computer Engineering
University of Rijeka, Center for Artificial Intelligence and Cybersecurity 19.05.2023
Sylabus
• Short overview of the field
• Four challenges
1, DSC Rijeka
Introduction – Typical protocol
2, DSC Rijeka
Introduction – AI in medicine
• Train machine learning
models that can:
●
Set up diagnoses,
●
Image retrieval,
●
Augment data,
●
…
●
Reduce labor
3, DSC Rijeka
AI in Medicine: Circle of Life
Hržić, F.; Tschauner, S.; Sorantin, E.; Štajduhar, I. Fracture Recognition
in Paediatric Wrist Radiographs: An Object Detection Approach.
Mathematics 2022, 10, 2939. https://doi.org/10.3390/math10162939
4, DSC Rijeka
Where is data in AI story
5, DSC Rijeka
Modern approaches requires
a lot of data
6, DSC Rijeka
Challenge 1: Data versatility and
different peculiarities
Picture a wedding in your head!
7, DSC Rijeka
• How about in
medicine?
A wedding in Niyamgiri - India
Data versatility and different
peculiarities
• Children are not “small humans”
• Is every disease/injury an anomaly?
• What are the other biases?
9, DSC Rijeka
Some diseases may be really
Rare – unbalanced data issue
• Dataset provided by Medical University of Graz,
Department of Radiology, Division of Pediatric
Radiology
• Pediatric X-ray images
• GANs as possible solutions?!?
10, DSC Rijeka
Challenge 1: Solution
Well make datasets publicly
available!!!
11, DSC Rijeka
Challenge 2: Data collection
12, DSC Rijeka
Legal challenges regarding AI and
medical data: Scattered data
• To prevent data bias,
data must be collected all over the world.
• Different countries different laws.
• How to export data?
• Patient consent?
• Transfer responsibility on the data provider
13, DSC Rijeka
Legal challenges regarding AI and
medical data: Data quality
• How to properly label the data?
• The gold standard (occasionally, erroneously, called
the golden standard) is the term used in medicine for
the test (imaging, blood test, biopsy, etc.) that is felt
to be the current best for diagnosis of a particular
condition. The gold standard for any specific disease
is not set in stone and can change over time. It is
against the gold standard that any new diagnostic
test is compared.
• Time consuming? What about images?
Cardoso JR, Pereira LM, Iversen MD, Ramos AL. What is gold standard
and what is ground truth?. (2014) Dental press journal of orthodontics.
19 (5): 27-30. doi:10.1590/2176-9451.19.5.027-030.ebo - Pubmed
14, DSC Rijeka
Fun fact: We have published the
dataset!
• A pediatric wrist trauma X-ray dataset
(GRAZPEDWRI-DX) for machine learning
• 6,091 patients,
• 10,643 studies (20,327 images)
• 74,459 image tags and features 67,771
labeled objects.
• 2 expert annotators, committee, 3.5
years
Nagy, Eszter, et al. "A pediatric wrist trauma X-ray dataset
(GRAZPEDWRI-DX) for machine learning." Scientific Data 9.1
(2022): 222.
15, DSC Rijeka
Challenge 2: Solution
• Build platforms for annotating
• Involve medical students (study
has shown they can be usefull :D)
• Make variations of available
annotated data: GAN, Online
learning?
16, DSC Rijeka
Challenge 3: Federated learning
17, DSC Rijeka
We only need models… “Data is
not important.”
Private data available through
Federated learning
• Data is not Public.
• Data is not Anonymized!
• Contrastive learning!
• Federated learning, what
is the catch?
Nagy, E., Janisch, M., Hržić, F. et al. A pediatric wrist trauma X-ray
dataset (GRAZPEDWRI-DX) for machine learning. Sci Data 9, 222
(2022). https://doi.org/10.1038/s41597-022-01328-z
18, DSC Rijeka
Challenge 3: Solution
• Quite possible
• Currently very expensive (Google
Colab: 100 CU = 1Gb/1Hour)
• Many technologies must
collaborate
• Still Law issues
19, DSC Rijeka
Challenge 4: Trustworthy AI
• Once model is trained – how to
explain why does it fails?
• Data problem or model problem?
Challenge 4: Solution
• Explainable AI
20, DSC Rijeka
Conclusion
• Data is hard to collect and annotate,
• … even harder to make publicly available,
• Development of laws and supportive
technology
• XAI!
• Go online?
21, DSC Rijeka
Ultimate goal
Ultimate goal
Challenges in Medical Image
Diagnostics
Challenges in Medical Image
Diagnostics
Thank you for your attention!
QUESTION TIME?
University of Rijeka, Faculty of Engineering, Department of Computer Engineering
University of Rijeka, Center for Artificial Intelligence and Cybersecurity

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[DSC Adria 23]Franko Hrzic Challenges in Medical Image Diagnostics.pdf

  • 1. Challenges in Medical Image Diagnostics Challenges in Medical Image Diagnostics DSC ADRIA 23 Data Driven Society Dr. Sc. Franko Hržić mag. Ing. Comp. University of Rijeka, Faculty of Engineering, Department of Computer Engineering University of Rijeka, Center for Artificial Intelligence and Cybersecurity 19.05.2023
  • 2. Sylabus • Short overview of the field • Four challenges 1, DSC Rijeka
  • 3. Introduction – Typical protocol 2, DSC Rijeka
  • 4. Introduction – AI in medicine • Train machine learning models that can: ● Set up diagnoses, ● Image retrieval, ● Augment data, ● … ● Reduce labor 3, DSC Rijeka
  • 5. AI in Medicine: Circle of Life Hržić, F.; Tschauner, S.; Sorantin, E.; Štajduhar, I. Fracture Recognition in Paediatric Wrist Radiographs: An Object Detection Approach. Mathematics 2022, 10, 2939. https://doi.org/10.3390/math10162939 4, DSC Rijeka
  • 6. Where is data in AI story 5, DSC Rijeka
  • 7. Modern approaches requires a lot of data 6, DSC Rijeka
  • 8. Challenge 1: Data versatility and different peculiarities Picture a wedding in your head! 7, DSC Rijeka
  • 9. • How about in medicine? A wedding in Niyamgiri - India
  • 10. Data versatility and different peculiarities • Children are not “small humans” • Is every disease/injury an anomaly? • What are the other biases? 9, DSC Rijeka
  • 11. Some diseases may be really Rare – unbalanced data issue • Dataset provided by Medical University of Graz, Department of Radiology, Division of Pediatric Radiology • Pediatric X-ray images • GANs as possible solutions?!? 10, DSC Rijeka
  • 12. Challenge 1: Solution Well make datasets publicly available!!! 11, DSC Rijeka
  • 13. Challenge 2: Data collection 12, DSC Rijeka
  • 14. Legal challenges regarding AI and medical data: Scattered data • To prevent data bias, data must be collected all over the world. • Different countries different laws. • How to export data? • Patient consent? • Transfer responsibility on the data provider 13, DSC Rijeka
  • 15. Legal challenges regarding AI and medical data: Data quality • How to properly label the data? • The gold standard (occasionally, erroneously, called the golden standard) is the term used in medicine for the test (imaging, blood test, biopsy, etc.) that is felt to be the current best for diagnosis of a particular condition. The gold standard for any specific disease is not set in stone and can change over time. It is against the gold standard that any new diagnostic test is compared. • Time consuming? What about images? Cardoso JR, Pereira LM, Iversen MD, Ramos AL. What is gold standard and what is ground truth?. (2014) Dental press journal of orthodontics. 19 (5): 27-30. doi:10.1590/2176-9451.19.5.027-030.ebo - Pubmed 14, DSC Rijeka
  • 16. Fun fact: We have published the dataset! • A pediatric wrist trauma X-ray dataset (GRAZPEDWRI-DX) for machine learning • 6,091 patients, • 10,643 studies (20,327 images) • 74,459 image tags and features 67,771 labeled objects. • 2 expert annotators, committee, 3.5 years Nagy, Eszter, et al. "A pediatric wrist trauma X-ray dataset (GRAZPEDWRI-DX) for machine learning." Scientific Data 9.1 (2022): 222. 15, DSC Rijeka
  • 17. Challenge 2: Solution • Build platforms for annotating • Involve medical students (study has shown they can be usefull :D) • Make variations of available annotated data: GAN, Online learning? 16, DSC Rijeka
  • 18. Challenge 3: Federated learning 17, DSC Rijeka We only need models… “Data is not important.”
  • 19. Private data available through Federated learning • Data is not Public. • Data is not Anonymized! • Contrastive learning! • Federated learning, what is the catch? Nagy, E., Janisch, M., Hržić, F. et al. A pediatric wrist trauma X-ray dataset (GRAZPEDWRI-DX) for machine learning. Sci Data 9, 222 (2022). https://doi.org/10.1038/s41597-022-01328-z 18, DSC Rijeka
  • 20. Challenge 3: Solution • Quite possible • Currently very expensive (Google Colab: 100 CU = 1Gb/1Hour) • Many technologies must collaborate • Still Law issues 19, DSC Rijeka
  • 21. Challenge 4: Trustworthy AI • Once model is trained – how to explain why does it fails? • Data problem or model problem? Challenge 4: Solution • Explainable AI 20, DSC Rijeka
  • 22. Conclusion • Data is hard to collect and annotate, • … even harder to make publicly available, • Development of laws and supportive technology • XAI! • Go online? 21, DSC Rijeka
  • 24. Challenges in Medical Image Diagnostics Challenges in Medical Image Diagnostics Thank you for your attention! QUESTION TIME? University of Rijeka, Faculty of Engineering, Department of Computer Engineering University of Rijeka, Center for Artificial Intelligence and Cybersecurity