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Data foundations
for digital health
Dr Heather Leslie
@omowizard
The challenge
We humans are biological animals.
We are analog devices trapped in a
digital world…
We are compliant, flexible, tolerant.
Photo credits: Unknown; Shvets Production; Pavel Danilyuk; Jonathan Borba: https://www.pexels.com
The digital health challenge
Yet we people have constructed
a world of machines that requires
us to be rigid, fixed, intolerant.
Donald Norman. The Invisible Computer. 1998
©
Atomica
Informatics
Documents
©
Atomica
Informatics
Unsustainable
Data design
• Chaotic
• Inconsistent
• Fragmented
• Reactive
• Proprietary
Photo credit: Brian Hewitt
©
Atomica
Informatics
Maybe a
new
approach?
©
Atomica
Informatics
The
Information
structure
problem…
• All clinical software programs, registries,
messages… have a different underlying
information structure
OPTIONS:
• *Transformation* between
unique or unequal
information structures
OR
• Common understanding of information -
requiring shared or equal information
models
©
Atomica
Informatics
The
Information
structure
problem…
• All clinical software programs, registries,
messages… have a different underlying
information structure
OPTIONS:
• *Transformation* between
unique or unequal
information structures
OR
• Common understanding of information -
requiring shared or equal information
models
©
Atomica
Informatics
Chaotic Proprietary >
Fragmented Opaque >
< Systematic Open standard
< Coherent Transparent
©
Atomica
Informatics
Health data
ecosystem
• open·​E·​H·​R | open·air
= Open Electronic Health Record (EHR)
Open source, ISO 13606-2
Specification - shared EHR architecture
Community of members
• Industry - vendors, platforms, integrators…
• Organisations – health services, eHealth programs…
• Individuals – clinicians, informaticians, academics…
openEHR International – nfp, UCL
©
Atomica
Informatics
CLINICIANS
model their
clinical
knowledge
Beale T, Heard S. An ontology-based model of clinical information. Stud Health Technol Inform. 2007;129(Pt 1):760-4.
©
Atomica
Informatics
©
Atomica
Informatics
Reference
Model
Archetypes
Templates
Data
dictionary
International/
National resource
‘Little data’ patterns
• Standardised
• ‘Fit for use’
• Centrally governed
Datasets
• Clinical Documents
• Messages
• Forms
• Minimum data sets
openEHR infostructure
©
Atomica
Informatics
Technical rules
• Building block
• Computable specification for
a single clinical concept
• Blood pressure
• Medication order
• Symptom
• Diagnosis
• Family History
• Maximal data set
• Universal use-case
• Design once, for re-use
• Governance is critical
Archetype
©
Atomica
Informatics
Archetype
• Building block
• Computable specification for
a single clinical concept
• Blood pressure
• Medication order
• Symptom
• Diagnosis
• Family History
• Maximal data set
• Universal use-case
• Design once, for re-use
• Governance is critical
©
Atomica
Informatics
Template
• Building block
• Computable specification for
a single clinical concept
• Blood pressure
• Medication order
• Symptom
• Diagnosis
• Family History
• Maximal data set
• Universal use-case
• Design once, for re-use
• Governance is critical
©
Atomica
Informatics
• Data set; multiple archetypes
• Computable specification for a
specific clinical purpose
• Consultation note
• Discharge summary
• Referral
• Death certificate
• Ultrasound report
• Flexible  clinical diversity
• Constrain  represent the specific use-case
• 1-∞ archetypes per template
• Governance NOT critical
Archetype
Template
©
Atomica
Informatics
www.openEHR.org/CKM
Clinical Knowledge Manager (CKM)
©
Atomica
Informatics
Blood Pressure review & publication
61 experts
13 countries
15 languages
Arabic (Syria)
Chinese (PRC)
Dutch
English
Farsi
Finnish
German
Japanese
Korean
Norwegian Bokmal
Portuguese (Brazil)
Russian
Spanish (Argentina)
Spanish (Spain)
Swedish
©
Atomica
Informatics
CKM
snapshot
Community
• 2850 registered users
• 105 countries
• >1100 volunteer reviewers
Archetypes – ~500
• 6000+ data points
• 25% published
• 31 languages
Core archetypes:
• Service request
• Adverse reaction risk
• Tobacco, Alcohol use
• Physical exam findings
• Lab & Imaging result
• Problem/Diagnosis
• Procedure
• Measurements
• Vital signs
16,000+
person hours
©
Atomica
Informatics
Archetype reuse
Leslie
H,
openEHR
Archetype
Use
and
Reuse
Within
Multilingual
Clinical
Data
Sets:
Case
Study
J
Med
Internet
Res
2020;22(11).
Open
access
from:
https://www.jmir.org/2020/11/e23361
Most new data sets/templates
~70-85% reuse
©
Atomica
Informatics
How many archetypes?
50 – Primary care
<3000 – Hospital
• Design once, share, reuse
• 2 level modelling
 Standardised archetypes
 Configurable templates
• Free for use
• Multilingual
• Independent/agnostic of
 Technology trend
 Clinical system or application
 Organisation
 Project
• Lifelong data – cradle to grave
• ‘Fit for purpose’
• Reduce+++ data transformation
 data exchange
 aggregation & analysis
• Basis for standardisation of:
 clinical decision support
 AI
• Personalized medicine - accurate
• Roadmap for existing systems
• Bootstrap new development
©
Atomica
Informatics
Contact
Dr Heather Leslie
Atomica Informatics
heather.leslie@atomicainformatics.com
@omowizard
openEHR International
@openEHR / @clinicalmodels
openEHR CKM - https://www.openehr.org/ckm/
openEHR Discourse site - https://discourse.openehr.org/
©
Atomica
Informatics

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Data foundations for digital health.pptx

  • 1. Data foundations for digital health Dr Heather Leslie @omowizard
  • 2. The challenge We humans are biological animals. We are analog devices trapped in a digital world… We are compliant, flexible, tolerant. Photo credits: Unknown; Shvets Production; Pavel Danilyuk; Jonathan Borba: https://www.pexels.com The digital health challenge Yet we people have constructed a world of machines that requires us to be rigid, fixed, intolerant. Donald Norman. The Invisible Computer. 1998 © Atomica Informatics
  • 4. Data design • Chaotic • Inconsistent • Fragmented • Reactive • Proprietary Photo credit: Brian Hewitt © Atomica Informatics
  • 6. The Information structure problem… • All clinical software programs, registries, messages… have a different underlying information structure OPTIONS: • *Transformation* between unique or unequal information structures OR • Common understanding of information - requiring shared or equal information models © Atomica Informatics
  • 7. The Information structure problem… • All clinical software programs, registries, messages… have a different underlying information structure OPTIONS: • *Transformation* between unique or unequal information structures OR • Common understanding of information - requiring shared or equal information models © Atomica Informatics
  • 8. Chaotic Proprietary > Fragmented Opaque > < Systematic Open standard < Coherent Transparent © Atomica Informatics Health data ecosystem
  • 9. • open·​E·​H·​R | open·air = Open Electronic Health Record (EHR) Open source, ISO 13606-2 Specification - shared EHR architecture Community of members • Industry - vendors, platforms, integrators… • Organisations – health services, eHealth programs… • Individuals – clinicians, informaticians, academics… openEHR International – nfp, UCL © Atomica Informatics
  • 10. CLINICIANS model their clinical knowledge Beale T, Heard S. An ontology-based model of clinical information. Stud Health Technol Inform. 2007;129(Pt 1):760-4. © Atomica Informatics
  • 12. Reference Model Archetypes Templates Data dictionary International/ National resource ‘Little data’ patterns • Standardised • ‘Fit for use’ • Centrally governed Datasets • Clinical Documents • Messages • Forms • Minimum data sets openEHR infostructure © Atomica Informatics Technical rules
  • 13. • Building block • Computable specification for a single clinical concept • Blood pressure • Medication order • Symptom • Diagnosis • Family History • Maximal data set • Universal use-case • Design once, for re-use • Governance is critical Archetype © Atomica Informatics
  • 14. Archetype • Building block • Computable specification for a single clinical concept • Blood pressure • Medication order • Symptom • Diagnosis • Family History • Maximal data set • Universal use-case • Design once, for re-use • Governance is critical © Atomica Informatics
  • 15. Template • Building block • Computable specification for a single clinical concept • Blood pressure • Medication order • Symptom • Diagnosis • Family History • Maximal data set • Universal use-case • Design once, for re-use • Governance is critical © Atomica Informatics • Data set; multiple archetypes • Computable specification for a specific clinical purpose • Consultation note • Discharge summary • Referral • Death certificate • Ultrasound report • Flexible  clinical diversity • Constrain  represent the specific use-case • 1-∞ archetypes per template • Governance NOT critical Archetype
  • 17. www.openEHR.org/CKM Clinical Knowledge Manager (CKM) © Atomica Informatics
  • 18. Blood Pressure review & publication 61 experts 13 countries 15 languages Arabic (Syria) Chinese (PRC) Dutch English Farsi Finnish German Japanese Korean Norwegian Bokmal Portuguese (Brazil) Russian Spanish (Argentina) Spanish (Spain) Swedish © Atomica Informatics
  • 19. CKM snapshot Community • 2850 registered users • 105 countries • >1100 volunteer reviewers Archetypes – ~500 • 6000+ data points • 25% published • 31 languages Core archetypes: • Service request • Adverse reaction risk • Tobacco, Alcohol use • Physical exam findings • Lab & Imaging result • Problem/Diagnosis • Procedure • Measurements • Vital signs 16,000+ person hours © Atomica Informatics
  • 21. • Design once, share, reuse • 2 level modelling  Standardised archetypes  Configurable templates • Free for use • Multilingual • Independent/agnostic of  Technology trend  Clinical system or application  Organisation  Project • Lifelong data – cradle to grave • ‘Fit for purpose’ • Reduce+++ data transformation  data exchange  aggregation & analysis • Basis for standardisation of:  clinical decision support  AI • Personalized medicine - accurate • Roadmap for existing systems • Bootstrap new development © Atomica Informatics
  • 22. Contact Dr Heather Leslie Atomica Informatics heather.leslie@atomicainformatics.com @omowizard openEHR International @openEHR / @clinicalmodels openEHR CKM - https://www.openehr.org/ckm/ openEHR Discourse site - https://discourse.openehr.org/ © Atomica Informatics

Editor's Notes

  1. When we use computers in healthcare, we have to face the inherent challenges of documenting the gentle art of clinical medicine into binary 0’s & 1’s. In some areas this is simple. In others, not so much. As humans we’re good at filling in the gaps. Think of the most infuriating questionnaire you’ve tried to fill out as a proxy for some of the issues around health data design. Only Yes/No answers when there are shades of grey or it’s not applicable multiple sub questions but only a single answer Ambiguities We can see this. The almost universal experience is that we know we can do it better, despite it being designed by intelligent, well meaning people Yet somehow we aren’t as critical with out data design. We assume the data is good. We assume the data has been designed by someone who knows what they are doing. But who ever looks under the hood of a digital application or checks out the data base. How do we know that the atomic data at the heart of our clinical systems, applications, projects etc is fit for use, much less leveraging this information for accurate applications of decisions support, personalised medicine or AI.
  2. Doomed to interminable and unsustainable patching between applications or domains
  3. What does it take to have systems & data that are different?
  4. My challenge to you is to think of this Lego city as an analogy for our EHRs. With the unseen infrastructure of city planning, electricity, gas, water, sewage etc representing all of the largely unseen parts of the EHR – the architecture, security etc. And the creations built of Lego bricks according to published patterns represent the content of the EHR.
  5. 61 clinical experts from 13 countries and is now available in 13 languages,