SlideShare a Scribd company logo
>>> text = word_tokenize("They refuse to permit us to obtain the refuse permit")
>>> nltk.pos_tag(text)
[('They', 'PRP'), ('refuse', 'VBP'), ('to', 'TO'), ('permit', 'VB'), ('us', 'PRP'), ('to', 'TO'), ('obtain', 'VB'), ('the',
'DT'), ('refuse', 'NN'), ('permit', 'NN')]
POS reference: https://cs.nyu.edu/grishman/jet/guide/PennPOS.html
Image from: http://www.nltk.org/book/ch07.html
discharge
discharge
Chest x-ray again shows a well-circumscribed nodule located in
the left upper lobe. The tumor has increased in size by 2 cm.
William Hayes is the patient’s name. The patient suffered
chest/abdominal pains. He also described feelings of nausea.
The nurse provided a cold compress. He then …
Patient presents with chest pain ... After administration of
nitroglycerin, the chest pain resolved.
It was felt that the patient probably had a cerebrovascular accident involving the left
side of the brain. Other differentials entertained were perhaps seizure and the patient
being post-ictal when he was found, although this consideration is less likely
This is a 62-year-old man who has no prior history of coronary artery
disease
She received her influenza vaccine
http://www.mayoclinic.org/ejection-fraction/expert-answers/faq-20058286
Functional gallbladder disorder is a diagnosis of exclusion in a patient with typical biliary-type
pain. The first step in the evaluation of such patients is to exclude other causes for the patient's
pain. If no other causes are identified, patients should undergo cholecystokinin (CCK)-stimulated
cholescintigraphy to confirm the diagnosis. CCK-stimulated cholescintigraphy allows for
calculation of the gallbladder ejection fraction (GBEF), which is low in patients with functional
gallbladder disorder (<40 percent) and helps predict which patients are likely to respond to
cholecystectomy.
Reference: http://www.uptodate.com/contents/functional-
gallbladder-disorder-in-adults
https://idash.ucsd.edu/sites/default/files/nlp-
media/AMIANLPTutorial10072012.pdf

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Clinical Healthcare Text Mining Introduction

  • 1.
  • 2.
  • 3.
  • 4. >>> text = word_tokenize("They refuse to permit us to obtain the refuse permit") >>> nltk.pos_tag(text) [('They', 'PRP'), ('refuse', 'VBP'), ('to', 'TO'), ('permit', 'VB'), ('us', 'PRP'), ('to', 'TO'), ('obtain', 'VB'), ('the', 'DT'), ('refuse', 'NN'), ('permit', 'NN')] POS reference: https://cs.nyu.edu/grishman/jet/guide/PennPOS.html
  • 6.
  • 7.
  • 8.
  • 9.
  • 11. Chest x-ray again shows a well-circumscribed nodule located in the left upper lobe. The tumor has increased in size by 2 cm. William Hayes is the patient’s name. The patient suffered chest/abdominal pains. He also described feelings of nausea. The nurse provided a cold compress. He then …
  • 12. Patient presents with chest pain ... After administration of nitroglycerin, the chest pain resolved.
  • 13. It was felt that the patient probably had a cerebrovascular accident involving the left side of the brain. Other differentials entertained were perhaps seizure and the patient being post-ictal when he was found, although this consideration is less likely This is a 62-year-old man who has no prior history of coronary artery disease She received her influenza vaccine
  • 14.
  • 15.
  • 16.
  • 17.
  • 18.
  • 20. Functional gallbladder disorder is a diagnosis of exclusion in a patient with typical biliary-type pain. The first step in the evaluation of such patients is to exclude other causes for the patient's pain. If no other causes are identified, patients should undergo cholecystokinin (CCK)-stimulated cholescintigraphy to confirm the diagnosis. CCK-stimulated cholescintigraphy allows for calculation of the gallbladder ejection fraction (GBEF), which is low in patients with functional gallbladder disorder (<40 percent) and helps predict which patients are likely to respond to cholecystectomy. Reference: http://www.uptodate.com/contents/functional- gallbladder-disorder-in-adults
  • 21.

Editor's Notes

  1. May be some bullet points for this slide explaining the image
  2. What is PRP, VBD, DT, JJ and NN?