Chempedia: A Social Medium for Chemical Information

•

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Chempedia and Chempedia Lab as test cases for new models of scientific communication. This talk was given at the Spring ACS in San Francisco, California on March 24, 2010.

Technology

Chempedia
A Social Medium for Chemical Information

American Chemical Society
March 24, 2010

Rich Apodaca
Founder & CEO
Metamolecular, LLC

Volunteer CAS Abstractors

Baker et al. J. Chem. Inf. Comput. Sci. 1980, 193

Volunteer CAS Abstractors

4000

3000

2000

1000

1907 1917 1927 0
1937 1947 1957
1967 1977 1979

Baker et al. J. Chem. Inf. Comput. Sci. 1980, 193

FAIL
<html>
<!-- ... -->

<img src="http://wikipedia.org/Venlafaxine.png">
</img>

<!-- ... -->
</html>

${{drugbox | > <PUBCHEM_GENERIC_REGISTRY_NAME> | CAS_number = 54910-89-3 54910-89-3 | licence_US = Fluoxetine | bioavailability = 72% > <PUBCHEM_SUBSTANCE_ID> | excretion = Kidneys 80% 56313632 | legal_status = Rx Only (U.S.) }} > <PUBCHEM_CID_ASSOCIATIONS> 3386 1$

Limitations

• Read-only

• Low user involvement

Limitations

• Read-only

• Low user involvement

• Reliance on non-
authoritative CAS Number
associations

The Missing Service
• On-Demand Unique ID

The Missing Service
• On-Demand Unique ID

• Expose Canonical URL

The Missing Service
• On-Demand Unique ID

• Expose Canonical URL

• Support Synonyms

The Missing Service
• On-Demand Unique ID

• Expose Canonical URL

• Support Synonyms

• Integrate Peer-Review

The Missing Service
• On-Demand Unique ID

• Expose Canonical URL

• Support Synonyms

• Integrate Peer-Review

• Free

Room For
Improvement
• Automate substance approval
• Multicomponent substances
• Batch registration
• URL-substance associations
• Multilanguage synonyms

Level 4: Game Mechanics

• Points
• Feedback
• Turn-Taking
• Customization
http://mixergy.com/amy-jo-kim/

Acknowledgements
• Chempedia/Lab Users
• Egon Willighagen

http://chempedia.com

http://lab.chempedia.com

http://depth-ﬁrst.com

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Chempedia: A Social Medium for Chemical Information

1. Chempedia A Social Medium for Chemical Information American Chemical Society March 24, 2010 Rich Apodaca Founder & CEO Metamolecular, LLC

3. Volunteer CAS Abstractors Baker et al. J. Chem. Inf. Comput. Sci. 1980, 193

4. Volunteer CAS Abstractors 4000 3000 2000 1000 1907 1917 1927 0 1937 1947 1957 1967 1977 1979 Baker et al. J. Chem. Inf. Comput. Sci. 1980, 193

5. FAIL <html>  <img src="http://wikipedia.org/Venlafaxine.png"> </img>  </html>

6. {{drugbox | > <PUBCHEM_GENERIC_REGISTRY_NAME> | CAS_number = 54910-89-3 54910-89-3 | licence_US = Fluoxetine | bioavailability = 72% > <PUBCHEM_SUBSTANCE_ID> | excretion = Kidneys 80% 56313632 | legal_status = Rx Only (U.S.) }} > <PUBCHEM_CID_ASSOCIATIONS> 3386 1

7. {{drugbox | > <PUBCHEM_GENERIC_REGISTRY_NAME> | CAS_number = 54910-89-3 54910-89-3 | licence_US = Fluoxetine | bioavailability = 72% > <PUBCHEM_SUBSTANCE_ID> | excretion = Kidneys 80% 56313632 | legal_status = Rx Only (U.S.) }} > <PUBCHEM_CID_ASSOCIATIONS> 3386 1

8. Chempedia1.0

9. Limitations

10. Limitations • Read-only

11. Limitations • Read-only • Low user involvement

12. Limitations • Read-only • Low user involvement • Reliance on non- authoritative CAS Number associations

13.

14.

15.

16. The Missing Service

17. The Missing Service • On-Demand Unique ID

18. The Missing Service • On-Demand Unique ID • Expose Canonical URL

19. The Missing Service • On-Demand Unique ID • Expose Canonical URL • Support Synonyms

20. The Missing Service • On-Demand Unique ID • Expose Canonical URL • Support Synonyms • Integrate Peer-Review

21. The Missing Service • On-Demand Unique ID • Expose Canonical URL • Support Synonyms • Integrate Peer-Review • Free

22.

23.

24. 551

25. The New Chempedia

26.

27.

28.

29.

30.

31.

32.

33.

34.

35.

36.

37.

38. Room For Improvement • Automate substance approval • Multicomponent substances • Batch registration • URL-substance associations • Multilanguage synonyms

39.

40. Level 1: Embrace the Web

41. Level 2: Commit to Free

42. Endangered Species?

43. Level 3: Users Rule

44. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/

45. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/

46. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/

47. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/

48. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/

49. Chempedia Lab

50.

51.

52.

53.

54.

55. metamolecular.com

56. Acknowledgements • Chempedia/Lab Users • Egon Willighagen

57.

58. http://chempedia.com http://lab.chempedia.com http://depth-ﬁrst.com

Chempedia: A Social Medium for Chemical Information

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