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BIOSAFETY IN
MICROBIOLOGY
LABORATORY
Presented by,
Dr. Apurba Das
JR1, Dept. of Microbiology
SVNGMC, Yavatmal
Dated : 14th March, 2023
OBJECTIVE
To define barriers and procedures
used by laboratories to protect workers
and others from infection.
To provide the highest practical
protection and the lowest practical
exposure.
BIO SAFETY IN LABORATORY
Why is Biosafety
Important?
BIO SAFETY IN LABORATORY
Laboratorians should recognize
hazards of processing infectious
agents.
To develop Guidelines to protect
workers in microbiological and
medical labs through engineering
controls, management policies,
work practices.
INFECTIONS OF
SPECIAL CONCERN
Tuberculosis
Hepatitis
HIV
Corona Virus
Enteric infections : Salmonella,
Campylobacters,
Shigella etc.
Other infections : Staphylococcus sp.
Streptococcus sp.
Brucella, Malaria,
Chlamydia, Rickettsiae etc.
BIO SAFETY IN LABORATORY
ROUTES OF INFECTION
BIO SAFETY IN LABORATORY
• Literal meaning of Inoculation is “Introduction of
material into eye”
• Introduction of Infection through Eye,
Breached/Intact skin by rubbing or touching
infected hand.
INOCULATION
• Licking, sucking or accidental swallowing of
infective materials.
• Splashing on the lips, touching mouth with
contaminated fingers, pipetting by mouth etc.
INGESTION
• Infection by breathing-in of infected aerosol,
droplet-nuclei or dust.
• Invisible aerosol are generated by any action that
breaks the continuity of the surface of a liquid.
INHALATION
STANDARD MICROBIOLOGICAL
PRACTICES
Restricted access
Hand washing
Prohibit eating, drinking, smoking,
applying cosmetics, nail-biting
Prohibit mouth pipetting
Safe handling of sharp equipments
Use of Personal Protective Equipment
BIO SAFETY IN LABORATORY
STANDARD MICROBIOLOGICAL
PRACTICES
NEVER:
Recap, bend or break needles.
Discard needles or sharp
instruments into biological waste
bags.
Discard needles into regular trash
bin.
BIO SAFETY IN LABORATORY
HAZARDOUS PROCEDURES
Syringe & Needle : Needlestick injury,
Splashing or Spraying, Contamination by
leakage.
Pipetting : Mouth pipetting, drips or aerosol,
skin stabbing by broken or fine tipped glass
pipette.
Inoculation : Vibration of an inoculating
wire/loop may cause splashing and aerosol
production.
BIO SAFETY IN LABORATORY
Shaking/Mixing : Shaking produces aerosol
even in a closed container and released on
opening.
Centrifugation : Vibration generate aerosol
within the container. Careless loading/unloading,
breakage during centrifuging can lead to gross
dissemination.
Stoppering tubes : Tube breakage by applying
tight stopper forcibly.
BIO SAFETY IN LABORATORY
Freeze-drying : Contamination of air from the
material being dried is inevitable and the procedure
should be done in an unoccupied room.
Microbiological safety cabinets : Improper
installation, maintainance and use can release
infection into air.
Animal procedure : Work with animals, affords
many opportunities for injury and infection. Bedding
contaminated with discharge and excreta can
liberate infected dust.
BIO SAFETY IN LABORATORY
Transport of specimen : Improperly closed
and packaged samples may leak. The outside of
containers may become contaminated during
sample collection.
Disposal : Contamination and injury may
occur during the collection and decontamination
of discarded cultures, specimen containers and
used equipments especially ‘sharps’.
BIO SAFETY IN LABORATORY
HAZARD GROUPS
16
GROUP 1
Organisms that are
most unlikely to
cause human
disease.
Ex : E.coli,
Lactobacillus
acidophilus etc.
GROUP 2
Organisms may
cause human
disease but are
unlikely to spread
in community.
Ex : Salmonella sp.
Staph. Aureus,
C. diphtherae,
Rabies, HIV, Measles,
Hepatitis, Herpes
virus etc.
GROUP 3
Organisms may
cause human
disease, pose a
risk to spread in
community but
effective
prophylaxis is
available.
Ex : M.
tuberculosis.
SARS, B. Anthrax.
GROUP 4
Organisms may
cause human
disease, pose a
risk to spread in
community but no
effective
prophylaxis is
available.
Ex : Ebola virus
CONTAINMENT/BIOSAFETY
LEVELS
BSL 1
*Normally harmless
organisms. (Hazard
group 1)
*Requirements :
Lab can be easily
cleaned and
washing facilities.
No need of
separate lab from
hospital building.
BSL 2
*Most pathogens in
hazard group 2.
*Requirements :
Easy to clean, BSC 1
adequate size,
Restricted entry,
Biohazard sign.
No need of separate
lab from hospital
building
Remove protective
equipment while
leaving the lab
BSL 3
*Most pathogens in
hazard group 3.
*Requirements : PPE
kits, BSC 2,
Biohazard sign,
Restricted entry,
Negative pressure in
lab.
Separate lab from
Hospital building
Autoclave is
necessary for
disposable waste
BSL 4
*Most pathogens in
hazard group 4.
*Requirements :
Sophisticated control
of air movement +
BSC 3, Restricted
entry. –ve pressure.
Separate lab from
Hospital building
Autoclave for
disposable waste.
Multiple shower at
entry & exit, UV in
each room
BARRIERS
PRIMARY BARRIERS
Physical barriers or personal
protective equipment between
lab worker and pathogen :
Gloves, masks, special
breathing apparatues.
SECONDARY BARRIERS
Structural aspects of the
laboratory that make working
environment safer against
infection.
Sinks for hand washing, Special
containment areas, special air
ventilation patterns.
BSL 1 BSL 2 BSL 3 BSL 4
MICROBIOLOGICAL
SAFETY CABINETS
CLASS 1
*Normally harmless
organisms.
*Requirements : Lab
can be easily cleaned
and washing
facilities. HEPA filter
CLASS 2
*Most pathogens in
hazard group 2.
*Requirements :
Easy to clean,
adequate size and
with access limited to
the laboratory
materials. HEPA filter
CLASS 3
*Most pathogens in
hazard group 3.
*Requirements :
Foregoing
precautions + away
from general
circulation +
continuous airflow +
HEPA filter.
CLASS 1 MICROBIOLOGICAL
SAFETY CABINET
BIO SAFETY IN LABORATORY
Room air is drawn in through the front opening (A) at
a minimum velocity of 75 fpm
passes over the work surface and then passes
through a plenum (D)
air from the cabinet is exhausted through a HEPA
filter (C). The work can be viewed through a glass
sash (B)
The HEPA filter may be located in the exhaust plenum
of the BSC or in the building exhaust.
HEPA FILTER
High-efficiency particulate air filter
Common standards require that a HEPA air
filter must remove at least 99.95% (European
Standard) or 99.97% (U.S.) of particles from
the air that passes through whose diameter is
equal to 0.3 μm
HEPA filters capture pollen, dirt, dust,
moisture, bacteria (0.2-2.0 μm), virus (0.02-
0.3 μm) etc
BIO SAFETY IN LABORATORY
CLASS II BIOSAFETY CABINET
 The Class II BSC differ from Class I BSC’s by
allowing only HEPA-filtered air (sterile) to
flow over the work surface providing both
product and personnel protection.
 They are classified into four types (A, B1, B2,
B3), on the basis of construction type, airflow
velocities and patterns, and exhaust systems.
 Used for working with infectious agents in
Hazard Groups 2 and 3 and with infectious
agents in Hazard Group 4 when positive-
pressure suits are used..
BIO SAFETY IN LABORATORY
CLASS II TYPE A BSC
BIO SAFETY IN LABORATORY
29
Air drawn from the room into the cabinet through the
front opening (A) at velocity of 75 fpm
Then 70% of air is recirculated through a plenum (D)
and a HEPA filter (E)
The remainder is exhausted through the HEPA filter
(C) to the room.
The work can be viewed through a glass sash (B) , the
blower is designated by (F)
Cannot be used for Radio-nucleotides and Toxic Chemicals
CLASS II TYPE B1 BSC
BIO SAFETY IN LABORATORY
30
Air enters the cabinet from the room through
the front opening at velocity of 100 fpm
Then 40% of air is recirculated through a
sump (A) and recirculating plenum (D).
Passing through HEPA filter (B & E) before
being exhausted (G) through a HEPA filter
(F) into negative pressure ducts to outside
The work space (H) can be viewed through a
glass sash (C)
Can be used for Radio-nucleotides and Toxic
Chemicals
CLASS II TYPE B2 BSC
BIO SAFETY IN LABORATORY
31
Air enters the cabinet from the room through the
front opening (A) at velocity of 100 fpm and drawn
into a cabinet planum (E) Before being exhausted to
the outside though a HEPA filter (C) and an negative
Duct system.
Simultaneously, room air enters the cabinet through
a second portal (F) and a HEPA filter (D)
Passes down across the work area and then joins
the outflow stream in the cabinet plenum (E)
The work can be viewed through a glass sash (B)
Can be used for Radio-nucleotides and Toxic Chemicals
CLASS II TYPE B3 BSC
Similar to Class II A biosafety cabinet except-
 ducts and plenums are under negative pressure
 cabinet air are exhausted to the outside of building
 suitable for work with volatile toxic chemicals and
radionuclides
BIO SAFETY IN LABORATORY
32
CLASS III BSC
Totally enclosed cabinet.
Four gloves are fixed to the ports so
that the operators are separated from the
work.
BIO SAFETY IN LABORATORY
Air enters through a portal and HEPA filter (D) and
exhaust out through a HEPA filter (C) into a
negative pressure duct system and outside
environment.
The worker manipulates the samples through
sealed gloves(A) & views the work through glass
shield(B)
Samples are passed into the box through an
interlock (E) where a double ended autoclave is
attached.
CLASS III BSC
BIO SAFETY IN LABORATORY
The disadvantages of this
approach include the difficulty of
performing fine manipulations
through thick rubber gloves
MICROBIOLOGICAL SAFETY
CABINETS :
CLASS 1 CLASS 2 CLASS 3
DISINFECTANTS
Disinfectants are hazardous
Precautions : Eye & Face protection,
Gloves etc.
Proper explanation of functions and
limitations of disinfectants to all who use
them.
Skin and work surfaces can be
decontaminated with 70% ethanol.
BIO SAFETY IN LABORATORY
DISINFECTANTS :
Use of Sodium Hypochloride : for
general purpose but not for tubercle bacilli
BIO SAFETY IN LABORATORY
Concentration Available
Chlorine
(ppm)
USE
10% 10,000 Virology and
spilled blood
2.5% 2500 Discard Jars
1% 1000 Routine surface
disinfection.
DISINFECTANTS :
Soluble Phenolics : for Tuberculous
material, Non-enveloped viruses etc.
Formaldehyde : Fumigation
Glutaraldehyde : on metals
BIO SAFETY IN LABORATORY
39
BIOSAFETY BREACH
Laboratory biosecurity incidents :
accidental laboratory-acquired infections
laboratory releases of lethal pathogens,
containment failures during transport of
lethal pathogens,
exposure of lethal pathogens to
laboratory personnel,
improper disposal of contaminated
waste,
escape of laboratory animals.
BIO SAFETY IN LABORATORY
BIO SAFETY IN LABORATORY
DATE PATHOGEN ORIGIN COUNTRY
2014 H1N1 influenza virus United States
2014-07-01 Smallpox United States
2014 Ebola Sierra Leone
2016 Zika virus United States
2018 Ebola Hungary
2019 SARS-COV-2 China
2022 Polio Netherlands
FEW EXAMPLES :
THANK YOU
BIO
SAFETY
IN
LABORATORY

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Bio safety (1).pptx

  • 1. BIOSAFETY IN MICROBIOLOGY LABORATORY Presented by, Dr. Apurba Das JR1, Dept. of Microbiology SVNGMC, Yavatmal Dated : 14th March, 2023
  • 2. OBJECTIVE To define barriers and procedures used by laboratories to protect workers and others from infection. To provide the highest practical protection and the lowest practical exposure. BIO SAFETY IN LABORATORY
  • 3. Why is Biosafety Important? BIO SAFETY IN LABORATORY Laboratorians should recognize hazards of processing infectious agents. To develop Guidelines to protect workers in microbiological and medical labs through engineering controls, management policies, work practices.
  • 5. Tuberculosis Hepatitis HIV Corona Virus Enteric infections : Salmonella, Campylobacters, Shigella etc. Other infections : Staphylococcus sp. Streptococcus sp. Brucella, Malaria, Chlamydia, Rickettsiae etc. BIO SAFETY IN LABORATORY
  • 7. BIO SAFETY IN LABORATORY • Literal meaning of Inoculation is “Introduction of material into eye” • Introduction of Infection through Eye, Breached/Intact skin by rubbing or touching infected hand. INOCULATION • Licking, sucking or accidental swallowing of infective materials. • Splashing on the lips, touching mouth with contaminated fingers, pipetting by mouth etc. INGESTION • Infection by breathing-in of infected aerosol, droplet-nuclei or dust. • Invisible aerosol are generated by any action that breaks the continuity of the surface of a liquid. INHALATION
  • 8. STANDARD MICROBIOLOGICAL PRACTICES Restricted access Hand washing Prohibit eating, drinking, smoking, applying cosmetics, nail-biting Prohibit mouth pipetting Safe handling of sharp equipments Use of Personal Protective Equipment BIO SAFETY IN LABORATORY
  • 9. STANDARD MICROBIOLOGICAL PRACTICES NEVER: Recap, bend or break needles. Discard needles or sharp instruments into biological waste bags. Discard needles into regular trash bin. BIO SAFETY IN LABORATORY
  • 11. Syringe & Needle : Needlestick injury, Splashing or Spraying, Contamination by leakage. Pipetting : Mouth pipetting, drips or aerosol, skin stabbing by broken or fine tipped glass pipette. Inoculation : Vibration of an inoculating wire/loop may cause splashing and aerosol production. BIO SAFETY IN LABORATORY
  • 12. Shaking/Mixing : Shaking produces aerosol even in a closed container and released on opening. Centrifugation : Vibration generate aerosol within the container. Careless loading/unloading, breakage during centrifuging can lead to gross dissemination. Stoppering tubes : Tube breakage by applying tight stopper forcibly. BIO SAFETY IN LABORATORY
  • 13. Freeze-drying : Contamination of air from the material being dried is inevitable and the procedure should be done in an unoccupied room. Microbiological safety cabinets : Improper installation, maintainance and use can release infection into air. Animal procedure : Work with animals, affords many opportunities for injury and infection. Bedding contaminated with discharge and excreta can liberate infected dust. BIO SAFETY IN LABORATORY
  • 14. Transport of specimen : Improperly closed and packaged samples may leak. The outside of containers may become contaminated during sample collection. Disposal : Contamination and injury may occur during the collection and decontamination of discarded cultures, specimen containers and used equipments especially ‘sharps’. BIO SAFETY IN LABORATORY
  • 16. 16 GROUP 1 Organisms that are most unlikely to cause human disease. Ex : E.coli, Lactobacillus acidophilus etc. GROUP 2 Organisms may cause human disease but are unlikely to spread in community. Ex : Salmonella sp. Staph. Aureus, C. diphtherae, Rabies, HIV, Measles, Hepatitis, Herpes virus etc. GROUP 3 Organisms may cause human disease, pose a risk to spread in community but effective prophylaxis is available. Ex : M. tuberculosis. SARS, B. Anthrax. GROUP 4 Organisms may cause human disease, pose a risk to spread in community but no effective prophylaxis is available. Ex : Ebola virus
  • 18. BSL 1 *Normally harmless organisms. (Hazard group 1) *Requirements : Lab can be easily cleaned and washing facilities. No need of separate lab from hospital building. BSL 2 *Most pathogens in hazard group 2. *Requirements : Easy to clean, BSC 1 adequate size, Restricted entry, Biohazard sign. No need of separate lab from hospital building Remove protective equipment while leaving the lab BSL 3 *Most pathogens in hazard group 3. *Requirements : PPE kits, BSC 2, Biohazard sign, Restricted entry, Negative pressure in lab. Separate lab from Hospital building Autoclave is necessary for disposable waste BSL 4 *Most pathogens in hazard group 4. *Requirements : Sophisticated control of air movement + BSC 3, Restricted entry. –ve pressure. Separate lab from Hospital building Autoclave for disposable waste. Multiple shower at entry & exit, UV in each room
  • 20. PRIMARY BARRIERS Physical barriers or personal protective equipment between lab worker and pathogen : Gloves, masks, special breathing apparatues. SECONDARY BARRIERS Structural aspects of the laboratory that make working environment safer against infection. Sinks for hand washing, Special containment areas, special air ventilation patterns.
  • 21. BSL 1 BSL 2 BSL 3 BSL 4
  • 23. CLASS 1 *Normally harmless organisms. *Requirements : Lab can be easily cleaned and washing facilities. HEPA filter CLASS 2 *Most pathogens in hazard group 2. *Requirements : Easy to clean, adequate size and with access limited to the laboratory materials. HEPA filter CLASS 3 *Most pathogens in hazard group 3. *Requirements : Foregoing precautions + away from general circulation + continuous airflow + HEPA filter.
  • 24. CLASS 1 MICROBIOLOGICAL SAFETY CABINET BIO SAFETY IN LABORATORY Room air is drawn in through the front opening (A) at a minimum velocity of 75 fpm passes over the work surface and then passes through a plenum (D) air from the cabinet is exhausted through a HEPA filter (C). The work can be viewed through a glass sash (B) The HEPA filter may be located in the exhaust plenum of the BSC or in the building exhaust.
  • 25. HEPA FILTER High-efficiency particulate air filter Common standards require that a HEPA air filter must remove at least 99.95% (European Standard) or 99.97% (U.S.) of particles from the air that passes through whose diameter is equal to 0.3 μm HEPA filters capture pollen, dirt, dust, moisture, bacteria (0.2-2.0 μm), virus (0.02- 0.3 μm) etc BIO SAFETY IN LABORATORY
  • 26. CLASS II BIOSAFETY CABINET  The Class II BSC differ from Class I BSC’s by allowing only HEPA-filtered air (sterile) to flow over the work surface providing both product and personnel protection.  They are classified into four types (A, B1, B2, B3), on the basis of construction type, airflow velocities and patterns, and exhaust systems.  Used for working with infectious agents in Hazard Groups 2 and 3 and with infectious agents in Hazard Group 4 when positive- pressure suits are used.. BIO SAFETY IN LABORATORY
  • 27. CLASS II TYPE A BSC BIO SAFETY IN LABORATORY 29 Air drawn from the room into the cabinet through the front opening (A) at velocity of 75 fpm Then 70% of air is recirculated through a plenum (D) and a HEPA filter (E) The remainder is exhausted through the HEPA filter (C) to the room. The work can be viewed through a glass sash (B) , the blower is designated by (F) Cannot be used for Radio-nucleotides and Toxic Chemicals
  • 28. CLASS II TYPE B1 BSC BIO SAFETY IN LABORATORY 30 Air enters the cabinet from the room through the front opening at velocity of 100 fpm Then 40% of air is recirculated through a sump (A) and recirculating plenum (D). Passing through HEPA filter (B & E) before being exhausted (G) through a HEPA filter (F) into negative pressure ducts to outside The work space (H) can be viewed through a glass sash (C) Can be used for Radio-nucleotides and Toxic Chemicals
  • 29. CLASS II TYPE B2 BSC BIO SAFETY IN LABORATORY 31 Air enters the cabinet from the room through the front opening (A) at velocity of 100 fpm and drawn into a cabinet planum (E) Before being exhausted to the outside though a HEPA filter (C) and an negative Duct system. Simultaneously, room air enters the cabinet through a second portal (F) and a HEPA filter (D) Passes down across the work area and then joins the outflow stream in the cabinet plenum (E) The work can be viewed through a glass sash (B) Can be used for Radio-nucleotides and Toxic Chemicals
  • 30. CLASS II TYPE B3 BSC Similar to Class II A biosafety cabinet except-  ducts and plenums are under negative pressure  cabinet air are exhausted to the outside of building  suitable for work with volatile toxic chemicals and radionuclides BIO SAFETY IN LABORATORY 32
  • 31. CLASS III BSC Totally enclosed cabinet. Four gloves are fixed to the ports so that the operators are separated from the work. BIO SAFETY IN LABORATORY Air enters through a portal and HEPA filter (D) and exhaust out through a HEPA filter (C) into a negative pressure duct system and outside environment. The worker manipulates the samples through sealed gloves(A) & views the work through glass shield(B) Samples are passed into the box through an interlock (E) where a double ended autoclave is attached.
  • 32. CLASS III BSC BIO SAFETY IN LABORATORY The disadvantages of this approach include the difficulty of performing fine manipulations through thick rubber gloves
  • 35. Disinfectants are hazardous Precautions : Eye & Face protection, Gloves etc. Proper explanation of functions and limitations of disinfectants to all who use them. Skin and work surfaces can be decontaminated with 70% ethanol. BIO SAFETY IN LABORATORY
  • 36. DISINFECTANTS : Use of Sodium Hypochloride : for general purpose but not for tubercle bacilli BIO SAFETY IN LABORATORY Concentration Available Chlorine (ppm) USE 10% 10,000 Virology and spilled blood 2.5% 2500 Discard Jars 1% 1000 Routine surface disinfection.
  • 37. DISINFECTANTS : Soluble Phenolics : for Tuberculous material, Non-enveloped viruses etc. Formaldehyde : Fumigation Glutaraldehyde : on metals BIO SAFETY IN LABORATORY 39
  • 39. Laboratory biosecurity incidents : accidental laboratory-acquired infections laboratory releases of lethal pathogens, containment failures during transport of lethal pathogens, exposure of lethal pathogens to laboratory personnel, improper disposal of contaminated waste, escape of laboratory animals. BIO SAFETY IN LABORATORY
  • 40. BIO SAFETY IN LABORATORY DATE PATHOGEN ORIGIN COUNTRY 2014 H1N1 influenza virus United States 2014-07-01 Smallpox United States 2014 Ebola Sierra Leone 2016 Zika virus United States 2018 Ebola Hungary 2019 SARS-COV-2 China 2022 Polio Netherlands FEW EXAMPLES :